ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX255482 | MEF
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◣ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Srsf2
Mfsd11
Ddx5
Cep95
Rpl3
H3f3b
Actb
Fus
Ddit4
Ubc
Sp1
Tuba1b
H4c14
Ier3
Flot1
H3c14
H3c15
H2ac19
H2ac18
Tuba1a
Setd5
Atf4
Cirbp
H4c11
Mat2a
Ppia
Fth1
Anapc5
Calm1
Hnrnpa2b1
Cbx3
Errfi1
Id3
H2bc21
H2ac21
H2ac20
Chrac1
Tpm1
Insig1
Pdlim7
Junb
H3c6
Ldha
Gm3448
Gm3417
Gm3435
Puf60
Zfp866
Slc3a2
Gpx1
Dusp1
Fam53c
Urgcp
H4bc24
H2bc23
H2ac24
H2ac23
Rplp0
Ptbp1
Ptpn2
Ccn1
Id1
Rsrp1
H2bc6
Irf1
Pkm
Smarcb1
Ier2
Atad2
Tob1
Sdc4
P4ha1
Hbegf
Ncl
Timp2
Ndufs7
Eef1a1
Mcl1
Polr2a
Mknk2
Mthfd2
Col1a1
Lgals1
Mif
Hnrnpab
Ptgs2
Ftl1
G3bp1
9030025P20Rik
Map2k2
Kansl2
Klf7
H2bc18
H3c13
Nabp1
Slc9a1
Sgf29
Eci1
Klhl9
Rps20
Fasn
Ccn2
H4c8
Ier5l
Cd24a
Zfp963
Gapdh
Tubb4b
Tmpo
Bclaf1
Pcnt
Dele1
Tmem123
Vim
Znfx1
Trib3
H2az1
Poldip3
Nfkbia
Birc2
Ppp1r10
Mrps18b
Tob2
Pcna
Dnajb12
Tex14
Hspa5
Pcif1
H4f16
Hsp90aa1
Nubp1
Jpt1
Amotl2
Gm13285
Gm13290
Gm13289
Polg2
Sgk1
Usp18
Prdx1
BC005537
Zfp119b
Hnrnph1
Washc4
Sqstm1
Aldoa
Immt
Smarcc2
Slbp
Csf1
Cstb
Slc25a4
Matr3
Actg1
H4c2
Socs3
Knl1
Scamp4
Adat3
Zfp53
Btg1
S100a10
Gpr19
Smg5
Amdhd2
Grina
Plau
Nufip2
Nup62
Il4i1b
Atf5
Alg1
H3c3
Snx5
Mgme1
Mphosph9
2810006K23Rik
Eif4a2
Dnajb4
Fubp1
Hmox1
Tnfrsf12a
Fbxo31
Uba2
Gnb1l
Grin2d
H3c10
H2bc13
H2ac13
Tmsb10
Ahnak
Nsrp1
Nfe2l2
Kat7
Impdh2
Rab5b
Swap70
Ctnnb1
H2bc15
H2ac15
Gm13279
Gm13278
S100a6
Amacr
Tcte3
Ermard
Gtf3c6
Pfkl
Hsp90ab1
H3c11
Acer3
Rsph3b
Dnajb1
Napepld
Serinc1
Slc12a4
Sike1
Slc38a2
Pdss2
Zfp433
Gm32687
Usp10
Hsf1
Bop1
Ostm1
Fam227b
Dtwd1
Zfp598
Cse1l
Eif4a1
Pik3r3
Actn4
Pkd1
Zfp36l1
Cltc
Tuba1c
Mettl25
Ccdc59
Rps27rt
Rps27
Rab13
Seh1l
AU041133
Ndufs8
H1f2
H4c4
Pygo2
Larp4
Spg11
Rad50
Kdsr
Ier5
Pole4
Tnfrsf1b
Atf1
Commd10
Rnd1
Sod1
Irf2bpl
Ifnz
H2bc1
H2ac1
Eed
Hexb
Dnaja1
Slc7a5
Pofut2
Tubb2a
Slc16a1
Aars2
Epc1
Polg
9130023H24Rik
Armc5
Srsf6
Arrdc2
Atxn10
Trmo
Tfrc
Rnmt
Fam210a
Deaf1
Egr1
Tti2
Cdkn2b
Iba57
Lcmt2
Adal
Ncaph2
Lmf2
Rrm2b
Psap
Tmco1
H3c2
Ddx59
H2ac4
Klf10
Mgat1
Bsg
Eapp
Baiap2
Ssbp1
Myo5a
Zfp672
Hdhd2
Eif5
Cops3
Ankrd52
Calm2
Eef2
Ano6
Slc29a3
Pkmyt1
Utp18
Mbtd1
Myl12a
Gm13287
Gm13275
Morc2a
Utp14b
Acsl3
Zc3hav1
Uvrag
Ubb
H1f0
Tab1
Cdc42ep1
Sephs2
Ppp1r15a
Plekha4
Fscn1
Lmbr1l
Grb2
Tmx4
Rabif
Pithd1
Tango6
H3c7
H2bc9
Mbd3
Agpat2
Pmf1
Dse
Hspa8
Thbs1
Tmem175
Gak
Ifi211
Aacs
Birc6
Inpp5k
Psmg4
Lipt2
Gls
Ranbp2
Zzz3
Abcd3
B2m
Lbh
Nabp2
Eif3a
Atp5g2
Srek1
Rnf111
Glo1
Mtfr2
Pigq
Paip2
Ran
Eef1akmt2
Nenf
Taf4
Rrn3
Mfsd5
Phtf1
Prr12
Dnajc14
Tmem198b
Serinc3
Rplp1
P4hb
Chkb
Tcerg1
Hint3
Ogfod1
Nudt21
Arhgap28
Fadd
Ywhaz
Zfp959
Slc20a1
Cers5
E130311K13Rik
Ptges3
Bhlhe40
Otub1
Ptpa
Crat
Sowahc
Septin10
Bst2
Cxcl1
Zfand5
Usp53
Mob1a
Ttc17
Reep3
Nfkbiz
H2bc4
H2ac6
Gtf2a1
Cox20
Rabggtb
Pacc1
Gm9949
Adrb2
Plk2
Gtf2b
Ptk2
Phf20
Reep5
Klf2
Azin1
Adprhl2
Ndrg1
Lmna
E2f7
Rnf10
Plec
Rbm33
Topors
Smim27
Rps13
Glce
Atf7
Lsm2
Efcab2
H2ax
H4c1
Prkar1a
Pcmt1
H3c1
Tdg
Zfp36l2
Uhmk1
Oaz1
Rnf216
Epha2
Chac1
Srsf5
Srp68
Epg5
Sec61a2
Gm13277
Slc26a6
Top2a
Tspan15
H4c17
Uspl1
Ctsl
Rpl13
Zdhhc3
Exosc7
Rnpep
Josd1
B4gat1
Pnrc1
Cebpb
Slc25a3
Septin11
Ndufa6
Anxa2
Ptprk
Timeless
Eif1
H1f4
Vcl
Pcbp1
Letm2
Kctd20
Cutc
Cox15
Zfp689
Specc1l
Dnajc19
Jpt2
Cdk12
Sptan1
Rps6
Dynll2
Yap1
Sparc
Zkscan8
Lrrc20
Pik3cb
Tcim
Rpl10a
Rufy1
Nop58
Pdxp
Fdxr
Tubb6
E4f1
Birc5
Vps54
Mrfap1
Cmtr1
Dhrs13
Gdpd1
Def8
Eprs
Rtn4
Afg3l1
Ndufa2
Ik
Cavin3
Rmdn1
Atp6v0e
Txlna
Wsb1
Rnf14
Zranb2
Dazap1
Ankhd1
Wbp4
Elf1
Flcn
Rab11a
Prune1
Dapk3
Ckap2
Itpr3
Slc2a1
Rnpc3
Ccdc62
Cav2
Pus7l
Irak4
Rhob
Taf13
Ep300
Rfx3
Slc5a6
Atraid
Lsm14a
Amd2
Amd1
Mlst8
Ubap2
D17H6S53E
Uck2
H1f3
Hnrnpa1
Cbx5
Hmgcr
Dhx9
Sp2
Zdhhc17
Sesn1
F2r
Cep57l1
Tsc22d1
Zc3h6
Ddit3
Pafah1b1
Cdr2l
Skp1
Nuak1
Ksr1
Spag7
Acot2
Ate1
Ddx21
Ccn4
Itga5
Snai1
Asph
Nudt8
Spats2
Uhrf1
Adprh
Npm1
N6amt1
Rbbp8
Plin2
U2af1
Cdca4
Sac3d1
Nprl3
Ulk2
Zfp36
Hspa9
Nfe2l1
Ube2g1
Dusp10
1700056E22Rik
Cd63
Aip
Tmem134
Polr3b
Mtap
Serpine1
Rps12
Naca
Kdelr2
Pih1d1
Aldh16a1
Sertad1
Drg1
Cavin1
Nae1
Car7
Dis3l
Rhot2
Plscr3
Gsk3b
Amn1
Zfp637
Parva
Atp6v0c
Cap1
Zscan25
Hmga2
Dtwd2
Angel2
Nus1
Fignl1
H3c4
Srsf3
Gm13288
Gpx4
Ipo7
Zfp568
Ppdpf
H2bc7
H2ac7
Fxr2
Bola1
Hp1bp3
Sco2
9530077C05Rik
Txn1
Anln
Mettl26
Gxylt1
Cfap97
Cep43
Mnd1
Zfp800
Nol7
Hk1
Ercc4
Cited2
Psmd7
Rpl5
Chka
Trp53rka
Fam122a
Hmgxb3
Map2k1
Sp4
Pdcd2
Gcat
Phlda3
Arl14ep
Cd164
Ttc7
Snx3
Pip5k1c
Ccnl1
Zfp655
Wdr4
Mrpl33
Ipmk
Osbpl8
Arhgap29
Dph6
Prpf38a
Orc1
Slc44a1
Ddah1
Nupr1
Plpp2
Pdlim5
Zfp868
Rpl17
Tcf25
Nars
Adss
H3c8
Kitl
Ybey
Mcm3ap
Grpel2
Pttg1ip
Stmn1
H4c3
Ppp1r12a
Timm13
Ccnl2
Arhgdia
Maff
Clip1
P2rx4
BC029722
Hdac7
Fads2
Pcbp3
Cflar
Kpnb1
Pdcd6ip
Rnaset2b
Rnaset2a
Hjurp
A730008H23Rik
Ubl7
Ttc9c
Hnrnpul2
Spg20
Hddc2
Bbs10
Zfp74
Zfp282
Tapbp
Wdtc1
Fgfbp3
Btg2
Cdkn1a
Hlcs
Tarbp2
Gtf2f1
Grasp
Rufy2
Sf3b5
Rad54b
Oas1g
Wdr45b
H2ac10
Csnk2a1
Esyt1
Tpt1
Zfp1
Calr
Elk4
Pank2
Zfp119a
Pyurf
Cdkn1b
Esd
Osgin2
Focad
Cks2
Zfp869
Camk2d
Susd6
Slc25a46
Mtres1
Zfp523
Mcm9
Hmgb2
Gabpb2
Ptma
Frmd6
Gars
Rps8
Mrps18a
Cnpy3
Luzp1
Scpep1
Fubp3
Trmt112
Prdx5
Ostf1
Nmrk1
Vgll3
Fam102a
Romo1
Nfs1
Herpud1
Hnrnpu
Ube2z
Ppp2ca
Tsg101
Atf3
Zfp213
Plpp1
Wipi1
Ctnna3
Slc38a7
Smad4
Zfp251
2310039H08Rik
Fmn1
Sec61a1
Sp3
Mbnl1
Klhl24
H2bc11
H2ac11
Gm13272
Gm33989
Dstyk
Slc25a39
Ncln
Gtpbp8
Stxbp3
Vps35
Plscr1
Tdp2
Acot13
Api5
Aurkaip1
Ago3
Laptm4b
Selenot
Cycs
Yars2
Wipi2
Vcp
Jmjd1c
Sigmar1
Prkdc
Mcm4
Exosc8
Alg5
Tiparp
Arf4
Rab21
Crk
Rps14
Alas1
Atp2b1
Cdk11b
Usp8
Zfp428
Rbl1
Ankrd24
Sirt6
Mdm2
Sfi1
Ndel1
Pim1
Ankle2
Dennd6b
Med11
Zc3h18
Mapk6
Trim41
Phactr4
Armh3
Ap1m1
Trim59
Chrnb1
Srsf1
Nfyc
Peli1
Dennd6a
Trim39
Tor1aip2
Tor1aip1
Ankrd37
App
Pgam5
Nab2
Fam160a2
Bicd1
Cdkn2c
Htra1
H4c18
Rnf19b
Tent4b
Hmga1
Alad
Afg1l
Hmga1b
Tmem86a
Odc1
Myh9
Dusp11
Sec62
Cnbp
Dip2b
Birc3
Mettl23
Jmjd6
Bola3
Ubqln1
Nhlrc2
Dclre1a
Ube3a
Mtif3
Ascc1
Anapc16
Naa16
Sf3a2
Plekhj1
Dcp1b
Cdk2
Apol9a
Rab5if
Il6ra
Ddhd2
Rab11fip2
Mis12
Derl2
Ece1
Rhobtb3
Galk1
Kifbp
Zfp706
Mak16
Vdac1
Aldh3a2
Cnpy2
Ikbip
Apaf1
Irgm1
Zbtb43
Clcn4
Ncbp2
0610012G03Rik
Ctdp1
Ankrd17
Mtmr10
Sft2d3
Prpsap2
Qrich1
Aarsd1
Zfp248
Rce1
Trim33
Herc6
Plekhm1
Yeats4
Csrnp2
Luc7l
Rpsa
Capn15
Serpinh1
Bbs2
H2aw
Msra
Tbc1d7
Rtf1
Slc9a8
Pnrc2
Ctps
Ints7
Dtl
Golga5
Dmxl1
Cs
Tmf1
Ddx17
Rps28
Cd47
Tbk1
Mertk
Thap1
Stat6
Naa10
Ccdc138
Myh10
Map6
Ddx3x
Glul
Adpgk
Atg10
Lnpep
Srcap
Cul5
Eif3d
Pet117
Kat14
Ddrgk1
Uqcrq
Trmt6
Mcm8
Smc4
Ift80
Cpsf1
Psmd12
Haus1
Atp5a1
Rps21
Tpgs1
H1f5
Slc25a28
Arc
Pqlc3
Eif3c
Tm2d1
Ndufb2
Tmem209
Ssmem1
Itfg2
Rps15
Stil
Tusc2
Sae1