ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620286 | NIH/3T3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◣ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Sspn
Pgk1
Tmem267
Vmn2r4
Oasl1
Gm13285
Gm13290
Gm13289
Gm13288
Gm13277
Gm13276
Gas1
Gm13279
Gm13278
Gm13287
Gm13272
Gm13275
Tab1
Mmaa
Ncbp2
0610012G03Rik
Rps3a1
Mkln1
Ifnz
Arhgap10
F3
Dnajc11
Trim65
Polr2a
H3c14
H3c15
H2ac19
H2ac18
H4f16
H4c3
H3f3b
H4c18
H4c14
Cxcl1
Eif1
Cwc22
Errfi1
Actb
Ddx5
Cep95
Atf4
H1f2
Mat2a
Mt1
Ubc
H3c6
Actg1
H4c4
Klf7
Fth1
Eef1a1
Hnrnpa2b1
Cbx3
Eif4a2
H1f4
Junb
Eapp
H3c11
H2bc18
H3c13
Ppp1r10
Tob1
Fyco1
Ier3
Arf6
Hspa5
Mt2
Hspa8
Rpl3
Zfand5
H2bc6
Mrps18b
Btg1
Nfkbia
Dusp1
Egr1
Tsc22d1
H4c17
Ubb
Ppia
Slc35e3
Gm3448
Gm3417
Ctnnb1
Nabp1
Vim
Poldip3
Mcl1
Id3
H2bc21
H2ac21
H2ac20
Fam53c
Raly
Mdm2
Ftl1
Gtf3c6
Ddit4
Ier2
Nr4a1
Cited2
Sp1
Ifrd1
Srsf2
Mfsd11
Adamts1
Zyx
Chac1
H4c9
Thbs1
H4c8
Vcl
Dusp5
H3c4
Fus
Calm1
Zfp36l1
Slc38a2
Rplp0
Sdc4
Cebpd
Sqstm1
Tcte3
Ermard
Herpud1
Nfkbiz
H3c2
Cirbp
Btg2
Cltc
Pnrc1
Id1
Tpt1
H1f3
Unk
BC005537
Ppp1r12a
Rps29
Fos
Ccnl1
Prdx1
Cdkn1a
Ccn1
Txnip
Flot1
Zfp36l2
Clcn4
Znfx1
Scrib
H3c10
Ulk2
Tuba1c
Clec2d
Calcoco1
Yeats4
Dnajb4
Srsf5
Odc1
Ptp4a1
Efcab2
Pcif1
Plk2
Tuba1a
Sik1
Cebpb
Rbm39
Nfat5
Sgk1
Tpm1
H2ax
Srsf6
Dnaja1
Srsf3
Palld
Litaf
H2bc4
H2ac6
Pcbp1
Hsp90aa1
Rps20
Dnajb1
Ddx3x
Serpine1
Slc25a4
Uspl1
Ap1g1
Fubp1
Tuba1b
Slc3a2
Hnrnpu
Ptgs2
Tiparp
H4c11
Hsp90ab1
Ints6
Tti2
Myl12a
B2m
Sfi1
Epc1
Rgs2
Cdc42
Nup62
Il4i1b
Atf5
Rhob
9030025P20Rik
Ywhaz
Hnrnph1
Serinc3
Tmem123
Timp2
Ccl7
Banp
Ddx23
Fn1
Gpx1
Klf6
Zfp869
Rptor
Phlda1
Ccl2
Eif5
1810013L24Rik
Tra2a
Snx17
Eif2b4
Calm2
Gtf2b
Zfp36
Taf4
Hnrnpab
9430015G10Rik
Itgb1
Cnot1
H4c1
H3c7
Dync1i2
Mrpl44
Insig1
Cdk12
Kmt2e
Eif4a1
Rap1b
Selenop
Dstn
Stat3
Pabpc1
Larp4
Ncl
Itga5
Kntc1
Ier5
Emd
Phlda3
Zfp963
Pole4
Hexim2
Pdlim5
Zc3h6
Napepld
Sde2
Rsrp1
Tmsb4x
Lmna
H2-L
H2-D1
Hmgb2
Amn1
Smim10l1
Csf1
Tmed2
Zfp1
Aaas
Tex14
Myh9
Gm3435
Gapdh
Nfe2l2
H2bc13
H2ac13
Setd5
Hif1a
Ddit3
Chmp4b
Resf1
Crem
Urgcp
Col1a1
H2bc12
H2ac12
Phf12
Ep400
Ppp1r15a
Plekha4
Ndufs7
Retsat
Elmod3
Mknk2
Zfp143
Coq10b
Zfp655
Wsb1
Irf1
Pkd1
Jun
Prcc
Esyt2
Zfp868
Cxcl5
Rdm1
Gem
Slc25a3
H1f0
Actr3
Rps12
H4c2
H4bc24
H2bc23
H2ac24
H2ac23
Kmt5b
Cfl1
Tob2
Gls
Ppp1r2
Eif3a
Fam227b
Dtwd1
Eif3c
Zbtb37
Pdss2
Tra2b
Pdlim7
Sptan1
Rpl10a
Glul
Slc9a1
Slbp
Opa1
Adnp
Rheb
Son
Gart
Dgat1
Trib3
Tmsb10
Ctsl
Pprc1
Nufip2
Wnk1
Arrdc2
Rabgef1
Rnf19b
Atp2a2
Snx5
Mgme1
Eif4g2
Klf2
Egr2
Rnft1
Mettl25
Ccdc59
Ldha
Usp48
Map2k2
Ywhag
Tmem168
Csrnp2
Srsf1
Raf1
Fstl1
Bach1
Ptpn2
Hmox1
H2bc15
H2ac15
Chchd2
Sec61a1
Hnrnpa1
Cbx5
Birc2
Csnk1a1
Grcc10
Ptms
Morf4l1
Sp3
Ndel1
Lbh
G3bp1
Baiap2
Cpeb2
Chrac1
Map1lc3b
Gadd45g
Cpsf1
Calr
Zfp866
Piezo1
Mtf2
Sod1
Homer1
Trp53rkb
Ddx39b
Rock2
Kctd5
Arntl
Mterf1b
Pcna
Ugdh
Gsto1
Txnl1
Mbnl1
9530077C05Rik
Dynll1
Zfp207
Ets2
Slc2a1
Pim3
Sub1
H3c3
Arl14ep
H4c12
Adprh
Arih1
Taf13
H2-K1
Ahnak
Slc39a10
Hipk3
Ubxn1
Nedd8
Gmpr2
Aff4
Hmgn2
Pbld2
Hnrnph3
Nfyc
Top1
Selenot
Sf3b1
Txn1
Wbp4
Elf1
Eif2b5
Acta2
Gtf2a1
Sepsecs
Pcnp
Sppl2a
Vegfa
Fasn
Galk2
Sned1
Cops2
Ccdc88a
Adnp2
Hdlbp
Col4a2
Eif4e2
Slc5a3
Mrps6
Gabpb2
Zfp637
Tmem175
Gak
Rab5if
Lrrc8a
Vdr
Nsrp1
H2bc9
Rpl9
Lias
Hnrnpa3
Prrc2a
Parva
Dusp2
Gadd45b
Gadd45a
S100a10
Rab11b
Sf1
Ddx59
Npm1
Mmadhc
Letm2
Sik2
Rnf10
Ep300
Ifi211
Ubald1
Rmi1
Rab1a
Hnrnpk
Phb
Gpx4
Atp6v0c
Pknox1
Ppm1a
Lox
Rfx3
Ptma
Kansl2
Atp6v1h
Rrn3
Eef2
Cct8
Chmp6
Ranbp2
Rpl17
P4ha1
Hspa4
Ap2m1
Ndfip1
Mtg1
Btaf1
Rabl6
Ccng1
Tut7
Polr2m
Eci1
Ppp6c
Pnp
Sharpin
Maf1
Htra2
Dpy19l4
Aup1
Cct2
Spindoc
Scaf1
Oat
Frmd6
Rpl41
Fosl2
Cox20
Gars
Rbks
Psmd7
Clk1
Babam2
Lrif1
Paxip1
Tcf25
Gmfb
Brwd1
Arl8b
Arf4
Ufl1
Angptl4
Puf60
Pafah1b1
Rps27rt
Rps27
Rab13
Jak1
Fbxl3
Tbcd
Rab7
Rfc4
Wdr70
Hexim1
Dcp1a
Cap1
Calu
Kat7
Atf1
Aacs
Slc25a32
Dcaf13
Uhmk1
Ddb1
Zcwpw2
Azi2
Ndufs4
Ankrd11
Trib1
Pigl
Ncor1
Nop14
Grk4
Filip1l
Ywhae
Elk4
Anln
Mrpl19
Egr3
Rps8
Jpt1
Rdh14
Dusp11
Adpgk
Ube2j2
Arl15
Irs2
Trmt44
Tubb4b
Gstp1
Cul1
Pigq
Hmgcr
Rpl5
Srrm2
Luc7l
Fosb
Ctdp1
Chka
Socs3
Smg5
Hspa9
Secisbp2l
Fem1b
H3f3a
Sec62
Phf20l1
Notch2
Knl1
Tmem87b
Pten
Rab33b
Ncln
Crebl2
Cct4
Stau1
Prnp
Prn
Ppp1ccb
Ppp1cc
Cotl1
Amdhd2
Rps6
Nubp1
N4bp2l2
Mterf1a
Mrpl39
Hmgn1
Trir
Lrp6
Tsnaxip1
Sox9
Rnf34
Ranbp10
Cnbp
Serbp1
Rprd2
Rplp1
Jund
Ccnt1
Fam43a
Saraf
Aven
Ttc41
Hsp90b1
Lrrc59
Ube2d3
Crtc2
Nrf1
Relb
Anapc5
Ing1
Trmo
Rraga
Ndufa9
H2bc8
H2ac8
Sun2
Pdia3
Ndufaf5
Esf1
Ero1a
Catsper2
Snx18
Fitm2
Usp53
Tbc1d13
Rpl38
Prkar1a
Kat6a
Twf1
Klhl24
Atf6
Ilf2
Cald1
Nme1
Atp5g2
Rabggtb
Pitpna
Pkm
Atg10
Rbl2
Alyref2
Zdhhc1
Tubb6
Fbxl18
Gmeb2
Ppp2cb
Sugct
Mplkip
Plec
Atp5g3
Lgals1
Zfp706
Tpm4
Rras
Ube2z
Bcl7b
Aff1
Copb1
Rubcn
Dnajb12
Zfp644
Rad54l2
Ier5l
Nsfl1c
Flcn
Map2k4
Trdmt1
Pdcd7
Tada3
Rpl23
Arpc4
Washc4
Rbm3
G3bp2
Mapkbp1
Eprs
Adrm1
Arl4d
Ube2h
Hnrnpdl
Kif2c
Med6
Birc6
Atp5o
Cd164
Mthfd2
Caprin1
Arf1
Serinc1
Zswim6
Ndufb8
Rpl13
Cdkn2aipnl
Mylip
Slc16a1
Rbbp6
Arl2bp
Malsu1
Tm9sf3
S100a6
Peli1
Tmem248
Cpsf6
Rgl1
Arpc5
Ube3b
Rbm33
Kctd10
Mapk1ip1l
Gspt1
Ankrd17
Smg8
Rcn2
Zc3h11a
Zbed6
St3gal2
Dennd6a
Ndufs3
Kbtbd4
Srp19
Gatb
Dip2b
Usp16
Pafah1b2
Zmat1
Pomp
Bclaf1
Drg2
Krr1
Hnrnpc
Degs1
Rab21
Polg2
Ccdc107
Nagk
Ube2l3
Pskh1
Slc12a4
Trim39
Tmf1
Nsun6
Arl5b
AW549877
Camk2d
Slc7a1
Csgalnact2
Terf2
Zfp119b
Tpp2
Kpnb1
Get4
Vamp2
Susd6
Rbm17
Oaz1
Lima1
E4f1
Mapk1
Csrnp1
Rtn4
Lnpep
Vdac2
Ifrd2
Pdk4
Ddx17
Wtap
Etf1
Aasdh
Smad1
Snrpd3
Niban2
Gucd1
Cd248
Snrpc
Enc1
Frs2
Mff
Flnc
Dhx33
Taf1d
Nptn
4931406C07Rik
Lrrc58
Btrc
Usp38
Tmem39a
Ell2
Tardbp
Creb1
Birc3
Rpl22l1
Txndc11
Gnas
Bud13
Matr3
Fscn1
Ppp2r3a
Cstf3
Ahctf1
Marf1
Srcap
Lcn2
Bcl2l13
Slc7a5
Trp53inp1
Rab43
Pigu
Srek1
Ube2v2
Hnrnpm
N6amt1
Mmp2
Rpl18a
Ppp2ca
Lemd2
Seh1l
Tax1bp1
Pold3
Cenps
Ankrd40
Ssbp1
Mif
Caprin2
Tmed5
Nars
Dynll2
Ccdc18
Aars
Dnttip2
Dhx16
2610001J05Rik
Tmed10
Tm2d1
Rpl10
Smarca4
Sart3
Iscu
Psmd12
Pakap
Clptm1l
Azin1
Tsfm
Tmem11
Sbf2
Nup153
Fermt2
Dhx9
Marchf5
Cpeb3
Por
Kctd20
Plag1
Mob1a
Cul5
Clk4
Chchd7
BC049762
Eif4ebp1
Ahcyl1
Plekho2
Fastkd1
Arid4b
Rps23
Rnpc3
Luc7l2
Nfe2l1
Gtf3c3
Mtmr10
Rel
Smim14
Cdr2l
Timm13
Gpat4
Csde1
Zfp959
Pim1
Hsph1
Ubn1
Psmb2
Med7
Glyr1
Fmc1
Arpc2
Uap1
Hlcs
Rfx1
P4hb
Rhot1
Eif2s2
Rybp
Ppp1cb
Rnf7
Lonp1
Chordc1
Catsperd
Ube2g1
Rpia
Ywhaq
Topors
Smim27
Spg11
Naa38
Dido1
Cyb5d1
Ppp3cb
Cdkn2b
Rpl15
Nkiras1
Noct
D5Ertd579e
Champ1
Ptbp1
Mphosph9
2810006K23Rik
Dnaja2
Usp34
Tasor
Mtmr2
Rpsa
Trpc4ap
Thrap3
Oxsm
Ngly1
Tmem183a
Mak16
Pradc1
Nrbp1
Map3k6
Cct7
Blmh
Asns
Wbp11
Dmap1
Dazap2
BC049715
Crk
Col1a2
Vps37a
Nrip1
Morc2a
Cnot7
Golph3
Cops3
Dars
Leng8