ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3200440 | mESC derived haemogenic endothelium
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◣ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Arntl
Cnot1
H3c6
Ska2
Prr11
H3c10
H2bc13
H2ac13
Ttc41
Hsp90b1
Katnb1
H2bc12
H2ac12
Gm2237
Prkaca
Sp2
H2bc22
H2ac22
Kmt2a
H2ac10
H1f2
H3c14
H3c15
H2ac19
H2ac18
Zfp869
Cry1
Ncl
H1f4
H2bc6
Calr3
1700030K09Rik
Ctnnb1
Arrdc4
Tle6
Eapp
Nfyc
Stk4
H2bc4
H2ac6
H4f16
H2bc14
Arid4a
Rfx1
H1f3
Pknox1
Ap3m2
N6amt1
Fyco1
H3c7
H2bc9
Usp1
H2bc21
H2ac21
H2ac20
Zfp963
Tbccd1
Dnajb11
Kpnb1
Mis12
Derl2
H2bc18
H3c13
Phb
Dcaf15
Gtf3c6
Flad1
Far1
Gm5165
H3c2
H2ac4
H3c4
H2bc7
H2ac7
Jund
Dcaf11
H3f3b
H3c11
Cnpy3
Atp5b
Gtf2a1
Fbxl3
Prdx1
Lats2
Pgp
Hmgb2
Tsnaxip1
Ranbp10
H2bc15
H2ac15
Klhl24
Ppia
Pnrc1
Rbm39
Gm3636
Gm3411
Rps19
Tnpo1
Ppp2r1a
Rnf5
H3c3
Tmem168
Cdk2ap2
Pradc1
Cct7
Zfp143
Rab11b
Rnpc3
Klf7
Slc39a3
Slc9a8
Fus
Zfp868
Hnrnpa1
Cbx5
Sde2
Clk1
Gm3448
Gm3417
Gm3435
Tle1
Marchf7
Cnot6
Kctd9
Cdca2
Eif1
Eef1a1
Rpl18a
Nepro
Lsm4
Top2b
Hspa5
H4c11
Poldip3
Aven
Zfp866
Ifrd1
Ncdn
AU040320
Dera
Tex14
Clcn4
Nucks1
BC005537
H4bc24
H2bc23
H2ac24
H2ac23
Cyth2
H4c17
Fmnl3
Pabpn1
Dnajb4
Fubp1
Ywhab
Spg7
Sumo3
Tpt1
Rps3a1
Arl2bp
Sel1l
Rbm25
H3c8
Zfp654
Cggbp1
Tmem94
H4c18
Srsf6
Srrm2
Kbtbd2
Snrpe
Polr2a
Vta1
Hjurp
A730008H23Rik
Cyld
Calcoco1
Txnl1
B230219D22Rik
9430015G10Rik
H4c12
Hmgn1
Hmgn2
Tardbp
Dazap2
Zfp523
Ilkap
Sdcbp
Zfp960
Zranb3
R3hdm1
Efcab2
Nr1d2
Ciart
Hsp90ab1
H4c14
Alyref2
H2az2
Sod1
Per2
Arcn1
Rbm6
Fam168b
Rita1
Ddx54
Setd5
Gbe1
Tom1
Hnrnpr
H4c3
Ppp3cb
Hsp90aa1
Tef
Eri3
Eif2ak3
Trir
Mylk3
Rhob
Map2k2
Srcap
Ddx39a
Ddx5
Cep95
Zfp623
Lsm6
Rps8
Hbp1
Utp4
Derpc
Chtf8
Phf7
Bap1
Rft1
Snx5
Mgme1
Nedd8
Gmpr2
Top3b
Etaa1
Fam76b
Cep57
Ppp1r10
Mrps18b
Sharpin
Maf1
9130023H24Rik
Armc5
Nsmce4a
Ttf1
Eif4a2
Tti2
Zfp24
Ints7
Dtl
Pcif1
Rap2a
Uhmk1
Trdmt1
Hnrnpc
Zfp422
Rmi1
Hnrnpk
Zfp326
Ppp2r2a
Pcgf3
Cops3
Rae1
Slc16a6
Arsg
Cnbp
P4hb
Ipo7
Zscan22
Ddx39b
Tra2b
Fiz1
Zfp524
Cdc42
Ddb1
Oard1
Nfya
Mcu
Fdft1
Rplp0
Itgb1
Eif4e2
Smg9
Epha7
Hnrnpa2b1
Cbx3
Mios
Mzt1
Yeats4
Epc1
Snx25
Ncln
Zdhhc17
Eif2ak4
Rfc1
Fbh1
Ankrd16
Elmo2
Ythdc1
Acot9
Bpnt2
Vps36
Smarcal1
Srsf5
Trmo
Srek1
Pole4
Kansl2
Csgalnact2
Sike1
Rp9
Chmp4b
Tut7
Polr2m
Nubp1
Ube2d3
H2bc11
H2ac11
Traf4
Taf15
Rpf1
Ercc6l2
Dscc1
Pcbp1
Grcc10
Fam76a
Sfxn5
Puf60
Elk4
Eif4b
Gtf2ird2
Mdm4
Dctd
Tcte3
Ermard
Eci1
Brwd1
Tm2d1
Ptbp1
Secisbp2
Ywhae
Zfp959
Dzip3
Cip2a
Tomm20
Sertad2
Kpna4
Srd5a3
Galnt11
9030025P20Rik
Anapc10
Abce1
Bola1
Mtx1
Bnip2
Thbs3
Pnpla8
Gmeb1
Mier1
Ubc
Mapk1ip1l
Get4
Ist1
H2bc1
H2ac1
Zc3h6
Rock2
Med15
Mapk6
Dedd
Aspscr1
Ets1
Srsf2
Mfsd11
Tmem123
Tcf25
Luc7l2
Fbxl4
Ankzf1
H2bc8
H2ac8
Med7
Iws1
Qrich1
Zfp428
Dgcr8
Ivd
Srsf3
Atp2a2
Zfp62
Rab2a
Cbfb
Ckap2
Cirbp
H4c1
H3c1
Ankhd1
Syde1
Ppp2ca
4930453N24Rik
Nutf2
Prpsap2
Wwc2
Mettl22
Trim27
Eif3c
Rheb
Pskh1
Ghitm
Krcc1
Tent4b
Pts
Mxd3
Rps20
Efnb2
Klf11
Cep43
Rab5b
Hint1
Ptdss1
Mterf3
Aak1
Gtf2a2
Slc4a7
Usp25
Hnrnpa3
Mmadhc
Tasor
Kdm5a
Dpp8
Nmd3
Snrnp70
Eif4e
Pcyt1a
Rnaseh2b
Mxd1
Tmem263
Fhl4
Rsrp1
Tle4
Hmgxb4
Tent2
Tubb4b
Cep128
Cr1l
Smim19
Slc20a2
Spag4
Poln
Haus3
Ppp6r2
Gmnn
Nup205
Tsc22d1
Rdm1
Cox20
Cat
Taf4
Rab21
Znrf1
Luzp1
Tnrc6a
Osbp
Nfe2
Ppp1r15a
Plekha4
Aff4
Kat6a
Yrdc
1110065P20Rik
Zfand6
Banp
Mmaa
Tmem242
Pmpca
Entr1
Ints9
Hmbox1
Zkscan3
Clptm1l
Tmem183a
Cox5a
Sowahc
Septin10
Fam185a
Ccdc146
Ensa
Srgap2
Fam72a
Mcl1
Smim10l1
Zfp655
Chrac1
Snrpd1
Thap1
Nr2c2
Gm6712
Trpc1
Mtus1
Sqstm1
Eif5
Slc12a4
Arl6ip1
Wdhd1
Socs4
Rnf4
Zfp871
Arhgap11a
Mbtps2
Raly
Cdk12
Rpl17
Rras
Naa38
Cyb5d1
Rabep1
Pkmyt1
Ywhaz
Zfp1
Arf4
Zfp691
Zfp341
Haus4
Vdac2
Fbxw11
Snapc2
Tbl1xr1
Akap10
Ncoa4
Dnaja1
Dnajb1
Nup62
Il4i1b
Atf5
Zc3h11a
Zbed6
Rpsa
Snw1
Opa3
Pdcd6ip
Fam204a
Smchd1
Sephs2
Dcun1d4
Dusp1
Ulk2
Odc1
Gabpb2
Psmd7
Hps5
Gtf2h1
Gtpbp6
Tomm70a
Mtpap
Cox8a
Pum1
Cfl2
Nyx
Zfp628
H1f5
Itga2b
Pdf
Eif4a3
Tspyl2
Atxn7
Top2a
Actl6a
Serinc3
Mtf2
Ubr5
Dhps
Rfesd
Prdm10
Zdhhc16
Exosc1
Hpf1
Ppm1a
Sdhaf2
Cpsf7
H6pd
Atad1
Ubxn4
Pex2
Stk3
Ppp3ca
Ahctf1
Oxsm
Ngly1
Smarca5
Paip2
Wdr4
Trp53inp2
Fbxo34
Slc35a3
Zfp445
Foxk2
Sbf2
Hic2
Pcm1
Yy1
Qtrt2
Ccdc191
Pibf1
Dis3
Ticrr
Ddx3x
Atf1
Bola3
Dync1li2
Txnrd1
Dync1li1
Gm33989
Hp1bp3
Sf3a2
Plekhj1
Tex261
Pfkfb3
Bmpr1a
Kntc1
Ddx59
Luc7l
Phf13
Tkt
Mettl1
Eef1akmt3
Ubb
H3f3a
Hnrnpm
Ube2d2a
Dnajc10
Casc3
Tcerg1
Rnf38
Ash2l
Txndc5
Gemin4
Dbil5
Ufsp2
1700029J07Rik
Zfp882
Ung
Dnajb12
Krr1
Zfp384
Irf2bpl
Atf7
Zbed3
Kmt5a
Sun1
Wdr78
Swsap1
Larp4
Zfp637
Rpl13
Trpc4ap
Sugp1
Mau2
Brd4
Rpl36
Topbp1
Vamp3
Sesn1
Zranb2
Eif5a
Hagh
Fahd1
Psmd4
Msh6
Cic
Tdrkh
Nfkbiz
Znfx1
Pigl
Ncor1
Ddx17
Eif3e
Kpna2
Selenof
Hs2st1
Ndfip2
Atg14
Evi5l
Elk1
Mat2a
Txnip
Hnrnpab
Urgcp
Slc39a10
Rbm7
Gm5617
Hsd17b12
Strn3
Ap4s1
Pdcd4
Cisd2
Usp35
Kctd21
Impact
Pih1d2
Nkapd1
Spata17
Gpatch2
Fnbp1l
Mrps9
E2f8
Tiparp
Rfx3
Tmem248
Mphosph9
2810006K23Rik
Exoc5
Ap5m1
Sfr1
Mcat
Rbfox2
Fkbp3
Psma3
Mageb3
Ctdspl2
Zfp433
Gm32687
Rhbdd2
Prpf40b
Chmp3
Exosc10
2310033P09Rik
Hnrnph1
Gsto1
Txn1
Gmfb
Csde1
Psmd3
Kansl1
Sav1
Usp40
Snrnp35
Stil
Gm10033
Rpl10a
Psmd12
Pak2
Klf9
Kbtbd7
Ebag9
Pcnt
Cnih1
Rnf44
Rps15a
H2ax
Eif4a1
Frmd6
Etf1
Ppp2r3a
Marchf5
Cpeb3
Usp34
Mapkapk5
Cyrib
Ccdc50
Erbin
Rps24
Patz1
Ing3
Cyfip1
Zfp553
Hyls1
Mcpt8
Litaf
Kmt2e
Ccdc88a
St3gal2
Ythdf3
Sphk2
Rpl18
M6pr
Rpl8
Ino80
Sumo2
Sp4
Caap1
Paip1
Vrk2
Dusp4
Prmt1
Map1lc3a
Il6st
Ccm2
Zfp809
Ncoa5
Rad18
Ranbp9
Zfp592
Capn7
Fignl1
Stt3b
Dnajb5
Kat7
Haus1
Atp5a1
Nedd4
Fnip1
Septin7
Tatdn3
Nsl1
Raver1
Xpo1
Vti1b
Spin1
Spcs3
Epb41
Ckap5
Adrm1
Rnf111
Zzz3
Lmbr1l
Gsk3a
Fam133b
Msantd2
Usp22
Slc30a9
Pwwp2b
Zbtb24
Ddhd1
Dpysl2
Mon1b
Rabgef1
Ints12
Gstcd
H2az1
Tlk2
Rasa2
Rmdn1
Btbd9
Abhd2
Son
Gart
Galk2
Ep300
Ufl1
Atg10
Mob4
H4c6
Orc5
Zdhhc20
Csnk1d
Ubxn6
Desi2
Sec24b
E2f3
Stam
Calm1
Glul
Adpgk
Wtap
Vps37a
Cnot7
Srxn1
Pum2
Eea1
Bcl6
Fem1c
Maml1
Adss
Zcchc9
Nbeal1
Rhog
Bptf
Tmem218
Atp8b3
Ppp1r2
Eif3a
Letm2
Pafah1b1
Ankrd17
Rpl22l1
Btf3
Snrpb
Rnf220
Gnpat
2810004N23Rik
Rhbdd3
Ewsr1
Gtpbp2
Ttc13
Arv1
Als2
Cltc
Cops2
Rrn3
Rbm3
Tpp2
Cep63
Anapc13
Ran
Hspe1
Hspd1
Vcp
Paip2b
Ctcf
Lrch3
Zfp511
Tubgcp2
Zmym5
Nck1
Rrnad1
Isg20l2
Zfp771
Plpp5
Tax1bp1
Ywhaq
Tmem115
Mef2a
Fbxo11
Agbl3
Klhdc2
Rps7
Rbm22
Zfand3
Phf10
Fam13b
Stk17b
Nasp
Zwint
Tcta
Rhoa
Det1
Nop58
D130040H23Rik
Asf1b
Rab4a
Zfp786
Rfc5
Nfe2l2
Sec62
Atp1a1
Clcn3
Ptbp2
Phospho1
Nr2c1
Nlk
Mdm2
Crem
Morf4l1
Dpy19l4
Pafah1b2
Fbxo4
Scaf8
Cops7a
Rpl30
Ubtd2
Serpini1
Pdcd10
Uri1
Psip1
Galnt1
Mcm6
Opa1
Upf3a
Rpl26
Ndufv2
Rpl6
2410002F23Rik
Atxn2l
Urb2
Taf5l
Adipor1
Yipf4
Rbl1
Slc29a2
Prkd3
Fkbp8
Npm1
Rps6
Relb
Anapc5
Rabggtb
Zmym2
Ddhd2
Mex3c
Abcf2
Fez2
Cdv3
Osbpl1a
AU041133
Prmt3
Rapgef6
Tdrd3
Gclm
Cnot3
Pbld2
Hnrnph3
Ing1
Zfp119b
Alg1
Vapa
Klhl9