ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX277329 | MEL
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◣ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Rptor
Snx17
Eif2b4
Tbcd
Scrib
Eif2b5
B9d1
Setdb1
Tmed2
Sepsecs
Chmp6
Ndufaf5
Esf1
Epg5
Aaas
Ddx41
Atf6
Gpn3
Fam216a
Mtmr10
Cox6c
Rpl38
Pold3
Get1
Mrpl44
Sass6
Zfp949
Mapkbp1
Cenps
Armc1
Ndufa9
Ep400
Fitm2
Dync1i2
Mvk
Mmab
Opa1
Zdhhc1
Ndufb8
Ufl1
Terf2
Rnf7
Stk32c
Lrrc27
Lamtor5
Pip5k1a
Ndufs4
Timm50
Sdad1
Cul2
Zfp846
Borcs7
Tsfm
Bud13
Crebl2
Ubxn1
Gale
Dus2
Ddx28
Maz
Klhl18
Kif9
Dnajc16
Kpna6
Ift22
Cog7
Atad5
Rpl3
Scnm1
Lysmd1
Zdhhc7
Zfp933
Snrpc
Yipf2
Timm29
Xpc
Lsm3
Tmem205
Ccdc159
Pop7
Med6
Ppp1r7
Pask
Pus1
Cdca4
Retsat
Elmod3
Bbs5
Calcoco1
Rab5if
Rtcb
Pdcd7
Nuf2
Sugp2
Armc6
Pole3
4933430I17Rik
Mrpl19
Mis18bp1
Rhot1
Dhx16
Pigu
Wdr12
Carf
Rnf113a1
Ndufa1
Clptm1
Zfp668
Zfp646
Atrn
Cluh
Psmd9
Mccc1
Clcn7
Erc1
Zc3h18
Rps12
Get4
Ppp6c
Sspn
Raver1
Tbcb
Polr2i
Med23
Mgst3
Fyco1
Med17
H2bc18
H3c13
Mtif3
H2bc21
H2ac21
H2ac20
Gss
H4f16
Nme1
Rbl2
Bod1l
Med18
LTO1
Dmap1
Dis3l2
Pex11b
Rnf123
Eif3c
H4c14
Gatad2b
Mtrex
Dhx29
Nup43
Frg1
Pum3
Trmt1
Ndufb5
Mrpl47
Tars
Smarcal1
Drg2
Dcp1a
H3c6
H4c4
Gtf2b
Aebp2
Als2
Cep63
Anapc13
Gpatch1
Slc25a32
Dcaf13
Coq5
Atad3a
Vta1
Tyw3
Cryz
Fntb
Heatr1
Mettl25
Ccdc59
Map2k7
Pigbos1
Pigb
Jund
Riok1
Cage1
Blmh
Hdhd3
9930021J03Rik
Zfp560
Smg8
Snapc2
Stk35
Gspt1
N4bp2l2
Ccdc57
Usp39
Rp9
Clcn4
Mff
Ddx42
Ccdc47
Gmfb
Wdr5
Pkig
Rrp1
H3c14
H3c15
H2ac19
H2ac18
Arfgap2
Tmem250-ps
Cep295
Ier3ip1
Wdr43
Poc5
Smarca4
Ube2j2
Kntc1
Rabl6
Ikzf5
Acadsb
Acsf3
Slbp
Pdcd2l
Sde2
Kctd3
Pbk
Ap1g1
Trp53rkb
Dnttip2
Lsm6
Stx8
Cfap52
Mcl1
Tmem168
Rab33b
Nup54
Ndufs3
Kbtbd4
Fbxl15
Dido1
Gid8
Tarbp2
Nudt5
Cdc123
Ints2
Taf1b
Hps5
Gtf2h1
Fbxw7
Taf11
Nup153
Mrpl21
Ighmbp2
Ipo9
Chordc1
Mrps35
Zfp809
H4c3
Slc38a2
Nyx
Aph1a
Lig4
Abhd13
Mtmr2
Psmg3
Nfat5
Tspan4
Polr2l
Dgat1
Stxbp4
Cox11
Tmem267
Thg1l
Ccnt1
Birc5
Gm3448
Gm3417
Tcte3
Ermard
Snx5
Mgme1
Palb2
Dctn5
Ermp1
Tmem248
Mrpl30
Mitd1
Uevld
Vps72
Nelfa
Zfp511
Tubgcp2
Coa6
H4c11
Cdkal1
Prcc
Ap1s1
Commd1
Bnip1
Smn1
Usp30
Arl5a
Clpx
H2ax
Phf23
Mrpl4
9030025P20Rik
Xrra1
Spcs2
2410002F23Rik
Calm2
Ppip5k2
Gin1
G3bp2
Mrpl35
Ciart
Polr3g
Mblac2
Mrps30
Golga4
Rrp15
Tbl3
Ilf2
Tbc1d7
Nbas
Tatdn3
Nsl1
Pyroxd1
Epor
Uspl1
Klhdc4
Atr
1700065D16Rik
Wdr36
Trrap
Nemf
Napepld
Cdk7
Birc2
Tti2
Cpsf1
Dpy19l4
Srr
Smg6
Hars2
Hars
Copb1
Lonp1
Catsperd
Eapp
2610001J05Rik
Ciao2b
5730455P16Rik
Pik3r3
Fam149b
Ecd
Spns1
Rprd2
Gsk3a
Atg4c
H3c3
Luc7l
Mapkapk5
Mrpl2
Klc4
Mfap2
Cdc16
Atp1b2
Gm3435
Gabpb2
Rusf1
Lgals8
Arhgap11a
H4c1
Morf4l1
Tcp1
Mrpl18
Arf6
Pts
Cct8
Mrpl1
Tchp
Commd2
Ap4e1
Nup133
Nedd8
Gmpr2
Atp9b
Rita1
Ddx54
9530077C05Rik
Anln
Hsph1
Eefsec
Exoc7
B9d2
Actb
Ppp1r11
Rfk
Slc39a1
Insig1
Secisbp2l
Taco1
Mrpl20
Nsa2
Gfm2
Ube4a
Ddx3x
Cox5a
Vps51
E130309D02Rik
H3c7
Clcn3
Sec22b
Mrps31
Nvl
Tecpr2
Cinp
Clasp1
Tob1
H2bc12
H2ac12
Slc25a51
Atg16l1
Hbs1l
Pex19
Oasl1
Anapc5
Fastk
Ndufa10
Gtf2f2
Lrriq3
Fpgt
Trim29
Stx16
Aarsd1
Srp19
Chmp4b
Snrpd3
Gucd1
Zfp426
Kctd5
Mtg1
Slc39a13
Rlf
Aggf1
Arnt
Zfp26
Cdc37
Rbks
Babam2
Trmt5
Slc38a6
Ppp6r3
Gar1
Prdx1
Sfxn5
Ints6
Arpc2
Tmed9
Marchf3
Erlin2
Prr14l
Esyt2
Htra2
Aup1
Fmc1
Mtpap
Ap3s2
Pf4
Chmp7
Ankzf1
Nudt14
H1f3
Sfi1
Rpp30
Ubc
Zfp36l1
Fcgr1
Wdr61
Ptar1
Pan2
Rad9b
H3c2
Man1a2
Ubox5
Fastkd5
Tars2
Taf13
Mkrn2
Lrpprc
Ammecr1
Rab11a
Ndufs1
Eef1b2
Map3k4
Tex14
Stx18
Ddx56
Mllt11
Cdc42se1
H1f2
Hspa5
Brca2
Tmem39a
Gtf3c3
Spg11
Sumo2
Cox19
Pdss1
Hnrnpa2b1
Cbx3
Nutf2
Dus1l
Serpini1
Pdcd10
H4c9
Cnot1
Eif4g2
Gmeb2
Ndufc2
Msra
Pcif1
Oxsm
Ngly1
Mrps21
H3f3b
Ddx5
Cep95
Rpl23
Lancl2
Taf5
Gtf2h3
Eif2b1
Rnf166
H1f4
Caprin1
Cdk11b
Atp1a1
Khdc4
Mcph1
Ppm1b
Zfp212
Cgrrf1
Polr2a
Sacm1l
Ythdf1
Anp32e
Ppil4
Asb1
Gp1ba
Trmo
Psmb2
Elp5
Ctdnep1
Mis12
Derl2
Wdr77
Atp5pb
Nat10
Eif2s1
Atp6v1d
Dnajb4
Fubp1
Taf4
Rps23
Psmd3
Cwc27
Nop16
Higd2a
Taf9
Rad17
Ak6
Klhl7
Vegfa
Phf20l1
Bms1
Pan3
Smim11
Gle1
Mrto4
Emc1
Snrpa1
Tbck
Aimp1
Sec13
Lins1
Gtf3c6
Rsrp1
Ttll11
Vps33b
Nxt2
Mrpl22
Tmem87b
Pmf1
H2-L
H2-D1
Zfp407
Erlec1
Asb3
Tmem39b
H2bc4
H2ac6
Tuft1
Plvap
Rfx3
Smndc1
Trub1
Paxip1
Krr1
Dhx33
Fra10ac1
Cnpy3
Tcerg1
Cbwd1
Zfp317
Ctnna3
Sephs2
Gtf2h4
Mrpl3
Kansl2
Slc7a6os
Prmt7
1110051M20Rik
AI467606
Ndufs7
Fastkd1
Mettl9
Tut1
Rsbn1
Ndufa2
Ik
Brf1
Rbm8a
Slc3a2
Polr2m
Utp15
Ankra2
Prpf3
Coa7
Nubp1
Caprin2
Pogz
Ift172
Mcfd2
Leng8
Trp53rka
Txndc17
Havcr2
Sec61a1
Snrnp27
Gatad2a
Ptges3
Ric1
Vps25
Polr3a
Fdxacb1
1110032A03Rik
Plek
Trip4
Mrps17
Nfx1
Inpp5k
Rab5c
Fahd2a
Cops6
Mre11a
Ankrd49
Tmem104
Nat9
Unk
Hsp90aa1
Ddb1
Faf1
Ubxn4
Ranbp6
Safb2
Safb
Rpp25l
Pus7l
Irak4
Bbs9
Atg5
Ppp1r10
Mrps18b
Vmn2r4
9430015G10Rik
Mterf1b
Ddx59
Tm2d1
Dcaf10
Anapc10
Abce1
Psmg1
Wdr59
Bzw2
Ankmy2
Crlf2
Rpl41
Ttc32
Tfeb
Acp6
Dhdds
Fam185a
Ccdc146
H2bc9
Prnp
Prn
Acp2
Rnf6
St7l
Capza1
Atrnl1
Utp23
Virma
Med27
Zdhhc3
Exosc7
Blvrb
Ssr2
Tmed1
Zc3h6
Fam227b
Dtwd1
Cct4
Trdmt1
Pum2
Dcaf12
Crcp
G6pc3
Cxxc1
Mrpl45
Haus6
Slc25a53
Brms1
Dhx9
Orc5
Mtif2
Dclre1b
Ap4b1
Atf7
Ppan
Vps45
Abhd4
Dad1
Pin1
H4c18
Ppp3cb
Ube3c
2700062C07Rik
Maea
Htt
Mtln
Ctc1
Srsf5
P4ha1
Tomt
Lamtor1
Tsg101
Fam122a
Ippk
Mrps15
Cfap298
Brwd1
Vdac2
Ppp1cb
Rpf2
Rbbp5
Ogfod3
Hexdc
Eif1ax
Triap1
Gatc
Med20
Gm20517
Bysl
Saraf
Mapk1
Exoc5
Ap5m1
Tmem101
H2az1
Tgfbrap1
AI597479
H3c11
Eif5
Galk2
Cops2
Jtb
Eef1akmt4-ece2
Eef1akmt4
Alg3
Oaz2
Abl2
Bmpr2
Hpcal1
Sp1
Zfp866
Atp6v1h
B4galt7
Arrb2
Ppox
Golph3l
Arntl
Ints13
Fgfr1op2
Otud7b
Ints5
D2hgdh
Chd2
Ap2m1
Ing1
Zfp119b
Canx
Gid4
H3c8
Zfp318
Gemin5
Pnrc1
Tubb4b
Zfyve1
Pacs2
Pgls
Smg5
Csde1
Morf4l2
Scfd1
Nudcd1
Eny2
Thap4
Atg4b
Sdf4
B3galt6
Ctnnb1
Ncl
Dars
Agbl5
Tbc1d5
Zfp653
Rcl1
Gba
Rbm39
Tpp2
Zfpl1
Cdca5
Hemk1
Yy1
Psma1
Bub1b
Polr3e
Lsm8
Bin2
Hif1a
Slc16a1
Fam53a
Rabgap1
H2bc11
H2ac11
Tceanc
Crlf3
Tada2a
Zbtb26
Ciao2a
C9orf72
Icam1
Eef1a1
Myl12a
Wdr70
Twf1
Clptm1l
Morc3
Ttc14
Casc3
Ccnt2
Pigyl
Gprasp1
Armcx5
Mterf1a
Ndufv2
Man1b1
Zfp438
Alkbh8
Kbtbd3
Zswim3
Acot8
Zfp276
Vps9d1
Trub2
Ppm1a
Ctdp1
Wdr45b
Klf10
Iba57
Edc4
Qtrt1
Znfx1
H4c12
Wbp4
Elf1
Zmat1
Rbm17
Sf3b4
Lamp1
Mocs1
Gpam
Smarcc2
Golga3
Gemin6
Rgs18
Lilra6
Cstf2
Tuba1c
Hnrnph1
Eif3a
Raf1
Rpl13
Senp5
Mfsd14a
Pak2
Cutc
Cox15
Nploc4
Fbxw2
Oxr1
Rab3gap1
Ddx39a
Prepl
Camkmt
Coasy
Cltc
Haus1
Atp5a1
Dffb
Cep104
Kank2
Vamp1
Thumpd2
Armc9
Dock6
Atp5g2
Rpl21
Zc3hc1
Prune1
Rhbdd2
Wiz
Mrpl9
Mindy1
Polr3gl
Samsn1
Klf6
Pygo2
Klhl20
Cnot10
Oxnad1
Dph3
Preb
Dnmt1
Tagap1
Slc16a10
Timm13
Tmem209
Ssmem1
E130311K13Rik
Slc35e1
Noc4l
Ddx51
Fbxo31
Pptc7
Yars2
Secisbp2
Kiz
Capn10
Dnajc24
Fancd2
Emc3
Bola1
Primpol
Casp3
Abi1
Cbfa2t3
Zfp868
H4bc24
H2bc23
H2ac24
H2ac23
Adnp
Knl1
Tbc1d13
Mphosph9
2810006K23Rik
Ythdf3
Rbbp7
Itpr1
Ubxn7
Antkmt
Kmt2c
Supt16
Gpatch4
Yif1b
Cct5