ChIP-Atlas: Target genes

Potential target genes for CPSF3

Query protein: CPSF3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10448665 | HeLa
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
CPSF3's Target genes

◢ CPSF3: Average

◢ SRX8018228: 293

◢ SRX8018229: 293

◢ SRX8018230: 293

◢ SRX8018231: 293

◢ SRX10448664: HeLa

◣ SRX10448665: HeLa

◢ SRX10448666: HeLa

◢ SRX10448667: HeLa

◢ SRX5441330: HeLa

◢ SRX5441331: HeLa

◢ SRX5441334: HeLa

◢ SRX5441335: HeLa

◢ SRX9237243: K-562

◢ SRX9237244: K-562

◢ SRX9237245: K-562

◢ SRX9237246: K-562

◢ SRX8945051: U2OS

◢ SRX8945057: U2OS

◢ CPSF3: STRING

PGK1
ZC3H10
RPL41
MTRNR2L1
MTRNR2L2
MSH3
DHFR
FRG2C
PHF1
C6orf226
H2BC4
H2AC6
DHPS
UBE2M
CHMP2A
IER3
FLOT1
H2BC11
H2AC11
H4C9
PHF23
DVL2
JUNB
MTRNR2L8
MAZ
GTPBP6
ATAT1
SLC38A2
DUX4
HES7
ALOXE3
RPL17-C18orf32
RPL17
C18orf32
H4-16
H2AJ
NDUFAF3
DALRD3
SYCE2
H4C12
STX10
IER2
IFITM1
IFITM3
IER5L
TMSB4X
ADM
EDC4
B3GALT4
FRG2
ID3
H4C3
H1-6
MSH4
H3C15
H3C14
H2AC19
H2AC18
MPDU1
LOC100996842
CD68
JMJD7-PLA2G4B
JMJD7
GADD45B
NAT10
H2BC5
H1-4
KRBA2
ZBTB45
ARFGAP2
IKBKG
G6PD
VPS28
MT2A
H4C11
FTH1
PDE4A
RPS2
NDUFB10
CDK11A
SUMF2
SYNRG
RCC1
GAPDH
H2AZ1
DNAJB14
IFITM2
ARHGDIA
RABL6
NRAS
H4C2
H4C1
C12orf57
RPL22L1
SLC39A7
RXRB
HSD17B8
RING1
RPS28
NDUFA7
SSC5D
NAT14
C19orf53
H2BC12
H2AC12
DDIT4
NOP53
CHD2
RHOB
SLC3A2
RAD23A
H2BC21
H2AC21
H2AC20
TUBB
PDCD2L
RPL13
CCDC24
ABTB1
COX18
AKAP8
NPDC1
ENTPD2
H4C7
H3C7
H2BC9
SIX5
TRIM8
CUL7
RGL2
IDI1
PRKAG1
PSMG1
PFN1
RNF167
SLC25A11
ENO3
MT1M
MT1E
C1QTNF8
POLG2
ZFX
CLN8
ZBTB22
TAPBP
DNAJC9
DUSP2
ASTL
POMZP3
GRAMD2A
FAM131A
WDR6
RRP36
MEA1
MID1IP1
WBP1
INO80B
FTL
CNOT3
SCRIB
STUB1
JMJD8
RHBDL1
H3C12
H2BC17
H2AC17
CEBPB
H1-2
MRPL28
H3-3B
H2BC8
H2AC8
ZNF446
ZNF34
RPL8
ZBTB12
EHMT2
C2
VTI1B
GGA2
GANAB
TMEM230
SLC50A1
DPM3
DAPK3
PRRT2
PAGR1
ADAMTS10
SNAPC5
CXorf38
TRIM37
DHRS11
CIRBP
UCKL1
CCDC107
TMSB10
P2RY11
SECISBP2
RIT1
FAM228B
SF3B6
WDR97
MAF1
RPS15A
CDK16
LDHC
GATD3B
GATD3A
PFDN5
MYG1
SH3BGRL3
FLOT2
GPAA1
EXOSC4
ZNF48
RCE1
RPL10
NADSYN1
DHCR7
TNFRSF12A
THOC6
HCFC1R1
PRKRIP1
BORCS6
ZNF703
NFKBIA
ARHGAP39
CENPA
APOM
GPANK1
C6orf47
H3C2
H2AC4
EIF1
ZNF653
UBB
KIF2C
ZNF581
ZNF580
ORAI3
ARHGAP4
WDR38
RPL35
MAML1
ID1
IDH3B
MDP1
CHMP4A
PIP5KL1
SFN
TUBA1B
MRPL53
TOM1
PHLDA1
IRX3
RSRP1
RPS11
RABGEF1
SCAMP3
COX20
CCDC34
H2BC7
H3C4
H2AC7
ATP5F1E
DDAH2
UBC
TUBB4B
FAM166A
RNASEK
C17orf49
ABCB6
NPM3
FGF8
H4C5
HNRNPA1
CBX5
TYSND1
KMT5B
TEDC2
HAX1
EPN1
NOLC1
IGF2BP3
H2AX
HMBS
C2CD4C
LRRC24
C8orf82
HPDL
UBTF
GAS2L1
KLRC2
H3C10
H2BC13
H2AC13
CEMP1
MTFP1
GPN2
CEBPA
CXCR5
TIGD5
EEF1D
VEZF1
CDH24
ANTKMT
TSC22D1
MLLT6
AMDHD2
SP3
MTA2
H1-10
TBK1
SURF6
TNFSF13
SENP3
DYRK1B
ZNF584
CD79A
ACP4
ICA1L
NKIRAS1
RPL15
VPS4A
HMCES
SNAP47
ELK1
HCN2
MRPL40
HIRA
CSKMT
C11orf98
UQCC3
LBHD1
RAB40C
PHOX2A
PRMT3
ZNHIT2
FAU
MAD1L1
CAMK2N2
VWA7
GMPPB
AMIGO3
TUSC2
ISY1-RAB43
ISY1
FUT11
H2BC15
H2AC15
TSPAN31
AGAP2
PCBP1
RPS29
GAS1
H3C13
H2BC18
ROPN1L
MROH6
COL23A1
CCDC200
INPP5K
CAPNS1
GET4
NXF1
CELSR3
SLC12A6
MYOZ3
INPP5E
CYRIB
FBF1
VEGFB
DNAJC4
TRPT1
NUDT22
NANOS1
SELENOH
S100A6
NDST2
RBM4
PIM2
TAOK2
MFSD3
PTOV1
PCF11
ARL6IP4
NOL3
RAB26
TRAF7
GMEB2
HMGA1
H4C15
H4C14
FADS2
FADS1
UPF3A
TMEM132A
SMIM29
TUT1
H3C8
H2BC10
NUDT17
CTNNAL1
SMTN
ABHD16B
PYGO2
LOC101928120
C17orf98
YY1
TMEM107
H3C1
H1-1
ZFP36L1
SRA1
BASP1
TBCD
ARID5B
C19orf71
SREBF2
CSNK1G1
POMT1
PAXX
CLIC3
DMPK
SCFD1
MVB12A
DUSP1
STAG1
SPOUT1
HDAC10
ANAPC4
CHD5
HTR6
MMP24OS
MMP24-AS1-EDEM2
MAPK8IP3
MAN2C1
IAH1
DPH7
GTF2A2
URGCP
SLC25A39
URGCP-MRPS24
TFPT
PRPF31
TNS2
PPP1R15B
EPN2
ZNF513
H4C8
LMNB1
PSMB10
CTRL
HMGN2
MYL6
TAF10
CRELD1
MCCD1
XRN1
SCARF1
RILP
DONSON
SNX14
DCAKD
HYAL1
NAA80
HYAL3
SPHK2
RPL18
FAM83E
THOC5
ATF4
TIGD3
SHOX2
RSRC1
CISD3
CDKN1C
CEBPD
TCIRG1
ADAT1
POLB
TBR1
SLC35B2
TXNIP
STYX
SUOX
GCN1
PRAF2
TLCD1
NEK8
E2F3
LENG9
GPR137
TULP3
SNX16
MOV10
FIBP
CCDC85B
PNMA1
PCBP4
NME4
DECR2
SEC14L1
FBXW4
IQCG
LMLN
C11orf91
LGR6
GSTO2
PTCH1
C5orf15
CCDC106
OPRL1
LKAAEAR1
TTLL3
SLC25A6
BAD
C20orf144
ACTL10
NAPRT
SLC39A1
CRTC2
C5orf24
GNE
MIF4GD
DPM2
CKB
HAMP
ROMO1
NFS1
LRP2BP
ANKRD37
RHOF
PWP2
LOC102724159
PYGM
SRSF11
ADK
VARS2
CCDC138
SELENOO
AK1
SLC5A5
TTYH2
MLXIP
ANP32B
ABCA7
PITX3
GBF1
TEX52
PIP4K2B
CRK
TXN2
SRRT
PLCXD1
TIMM13
POLD1
RPLP2
PIDD1
CD320
SIGMAR1
ARID3C
IGF1R
PHLDA2
RRAD
CDH16
FAM89B
EHBP1L1
ZNRD2
IL17C
ZASP
SAP25
IMPDH2
APTX
CRYAA2
CRYAA
LLGL2
NME3
MRPS34
EME2
CELF1
C16orf46
TARBP2
MAP3K12
REEP4
KLHL11
TMEM223
TMEM179B
APOLD1
TLL2
MRI1
AJM1
TUBD1
RPS6KB1
SGSM3
PABPN1
FBXO4
ABCF3
NUMBL
SSH3
FAM174C
MSMP
GNB1
OAZ1
MCOLN1
CDC6
HSPB1
ZACN
GALR2
SFXN4
DDX56
TAF6
CNPY4
MLX
COASY
ZNF35
POM121C
HSPE1-MOB4
HSPE1
HSPD1
H2AB3
H2AB2
H2AB1
F8A3
F8A2
F8A1
SLC25A42
ZFP36L2
NDUFS3
KBTBD4
SIRT7
MATR3
LARP1
PATZ1
SPEN
KPNB1
ZNF865
POP5
DRAP1
C11orf68
BUD13
TTC33
C7orf26
USP21
DYNLL1
CDK5R1
RNF44
SLC25A5
CDHR2
WDR90
MRM1
FAM156B
FAM156A
IFRD2
SRSF2
MFSD11
PNPLA2
DNAJB4
JADE2
RAB1B
RNF223
GADD45A
DPH2
B4GALT2
ATP6V0B
CEP192
ACOX3
RHOV
NECAB3
EXOSC6
FNBP1
PLPP5
TRIM52
IRF2BP1
TSFM
SLC25A10
CITED4
RNF225
TLCD2
NOP2
APOE
TUBGCP6
NOL7
CHEK1
MTFR2
MRNIP
BAG2
GRWD1
COPS6
IRF2BP2
FUT8
ETS2
RRM1
PNRC2
RPUSD1
CHTF18
ANKRD39
MIOX
MST1
EIF4A1
ARHGEF12
DPP3
HUWE1
ELMO3
FSTL3
KAT5
METRN
TEX45
KCNK7
E4F1
ERCC5
WDR45
BAZ2A
PPP1R37
DLG4
ACADVL
CCAR2
CCND1
SEC16A
C9orf163
WDR83OS
WDR83
MAN2B1
RPS23
ATP6AP1L
TYMP
SCO2
PPFIA4
ZNF251
MRPS24
PTMS
USF2
IFI35
LAG3
CRACR2B
LZTS2
TTC16
PTRH1
FDX2
UBE2C
THAP7
ST3GAL3
CCDC97
H3-2
SCML1
SPTAN1
STK19
DXO
ARF3
C8orf76
RRS1
ADHFE1
ACTN4
KLF9
FAM219B
SEC14L2
ST6GALNAC6
AHNAK2
MED26
TENT4A
KDM4B
PKP3
GPX1
PPP1R35
PIK3R2
HAS3
RPS13
WDR27
C6orf120
LRFN4
FBXO31
MAP1LC3B
MADD
SNX22
WDR24
CCDC130
TMF1
SEC31A
PNKP
PDF
SOD2
JPT2
TOR3A
ACAT2
ZNF517
CCNDBP1
CXCR4
CEND1
TOB2
UNC13D
LRCH3
PTP4A1
CPT1A
SNAPC4
GPS2
ANKRD12
KRT18
MYO1G
EVA1B
TMEM139
CASP2
AP2M1
AGO3
CYC1
RPL19
MTRF1L
ELOVL1
PRKACA
CDC20
CACNB1
SLC25A17
ANKRD54
AMZ2
CDK11B
CCDC78
HAGHL
APC2
SLC39A10
HES3
RECQL4
LRRC14
KMT2E
SLURP1
SPSB2
TPI1
GDF15
SLC5A3
MRPS6
PGP
BRICD5
NDUFB2
IL34
FZD9
TRAPPC4
RPS25
CS
TRADD
HSF4
FBXL8
SETD1B
CSRNP2
PHTF1
L3MBTL1
SPAG7
DBP
SRSF4
H2BU1
H2AW
TCTEX1D2
PTPN6
OSTC
ANKMY1
TFAP2A
RNPEPL1
TSSC4
PLEKHN1
DNASE1L2
SCGB1C1
LBR
COQ3
NR3C1
ZBED8
CACNB3
RASD1
AGBL2
SWSAP1
AP5Z1
SAMD1
H2BC14
H2AC14
EDEM1
C19orf67
CCNB2
ITGAD
GABARAP
H1-0
GCAT
MXRA8
DVL1
SRCAP
LOC730183
MAP4K2
SPATC1L
PURA
RPS20
PPOX
IFITM5
SNX5
MGME1
THAP3
PELO
ITGA1
UNC45A
HDDC3
PHIP
ZBTB38
SLC35A2
TEX22
MXD1
SOCS3
RPL36
VPS13C
NOXO1
GFER
TMEM267
MRPS28
USP34
TFAM
PITPNM2
COQ7
MPHOSPH8
HSPA1L
HSPA1A
MKNK1
SMG9
SPSB3
ARMC7
RBMX
TSC22D3
RPS27A
CLHC1
DCK
TMEM101
COMMD5
MRPL12
ARID1A
ZNF720
RDH5
COL9A3
B3GNT9
LCAT
PGAM2
ADRM1
TMEM210
LRRC26
EID1
ACLY
HYKK
LRP6
ZNF335
GH1
MAPKAPK5
TSN
RABL2B
RABL2A
SRD5A1
POLR3F
DZANK1
CACTIN
NVL
DYNC1LI2
RPS18
NUP85
ICE1
IPO13
VDAC2
NME6
RWDD1
VPS52
OAZ3
MRPL9
C19orf48
REXO1
MRPS7
GGA3
LYRM4
FARS2
PSMD12
SLC35B1
SUCLG1
ZNF576
IRGQ
NCLN
HSPA9
FAM187A
EFTUD2
CCDC103
TAOK3
SUDS3
CAPRIN1
UBE2I
RBBP5
PSMG2
CEP76
UPF2
GOSR2
POLR2E
EXOSC5
BCKDHA
DCTN1
VARS1
BLCAP
NUP205
MRPS5
HADHB
HADHA
STAM2
HMGB1
PSMD1
ACTR10