ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: Cdk9 | Average
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◣ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Tcstv3
Cldn34d
Brox
Aida
Kpna1
Il31ra
Abhd6
Sspn
Olfr806
Slc35g3
Polr2a
Tmem125
Dchs2
Oasl1
H4f16
H2aj
H3c15
H3c14
H2ac19
H2ac18
Asmt
H4bc24
H2bc23
H2ac24
H2ac23
H4c3
H1f6
Wwox
Tex14
H3f3b
H4c18
H4c14
H2bc6
Cxcl1
Eif1
Cwc22
Errfi1
Actb
Ddx5
Cep95
Atf4
H4c4
Mt1
Ubc
H1f2
Mat2a
Jund
Iqcn
Actg1
H3c6
Fth1
Csf2ra
Klf7
H3c11
H2bc22
H2ac22
H1f4
Eapp
Eef1a1
Ube2a
Junb
Hnrnpa2b1
Cbx3
H1f5
H3c13
H2bc18
Fyco1
Tob1
Srsf7
Ppp1r10
Mrps18b
H2bc12
Hspa8
Ier3
Flot1
Mt2
Zfand5
Hspa5
Arf6
H4c17
Rpl3
Btg1
Tsc22d1
Ctnnb1
Pgk1
Nfkbia
Dusp1
Gm3448
Gm3417
Nemf
H4c8
H3c8
H2ac10
Egr1
Taf12
Nabp1
Ifna13
Ppia
Ubb
Slc35e3
Poldip3
H4c9
H2bc11
H2ac11
Raly
Vim
H2bc21
H2ac21
H2ac20
Mcl1
Id3
Ier2
Tcte3
Nr4a1
Fam53c
Zfp143
Gtf3c6
Ftl1
Mdm2
Ddit4
Sp1
H4c2
Cited2
H3c2
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Calm1
Srsf2
Mfsd11
Ifrd1
Thbs1
Ermard
Zyx
Adamts1
Fam227b
Dtwd1
H3c10
Dusp5
Vcl
Chac1
H2bc13
H2ac13
Cebpb
Fus
Zfp36l1
H4c6
H1f3
Rplp0
Sdc4
Sirt4
Cebpd
Cdh12
H2ac4
Sqstm1
Slc38a2
Herpud1
Cdkn1a
Nfkbiz
Cirbp
Btg2
Tpt1
Pnrc1
Cltc
Fos
Ccnl1
Prdx1
Unk
Id1
Ulk2
Scrib
Ppp1r12a
BC005537
Dnajb4
H2bc14
Ccn1
Znfx1
Lima1
Txnip
Zfp36l2
Vmn2r4
H4c1
Pcif1
Calcoco1
Tuba1c
Uspl1
Srsf5
Odc1
Fam174c
Efcab2
Clec2d
Yeats4
Nfat5
Ptp4a1
Sfi1
Tmem107
Plk2
Sgk1
Rps29
Tuba1a
Sik1
Rbm39
Litaf
Fubp1
Tpm1
H2bc4
H2ac6
H2ax
Rgs2
Srsf6
H2-DMa
Brd2
Dnaja1
Ap1g1
Serpine1
Rps20
Hsp90aa1
Dnajb1
Ddx3x
Pcbp1
Srsf3
Slc25a4
Palld
Nudt13
Esr1
9030025P20Rik
Tuba1b
Slc3a2
Ptgs2
Ywhaz
Epc1
Tti2
Ddx23
Rhob
Tiparp
Hsp90ab1
H4c11
Tmem123
Banp
Nup62
Il4i1b
Atf5
Timp2
Ints6
Vmn2r102
Fn1
Serinc3
Myl12a
B2m
Hnrnph1
Cdc42
Rptor
Ccl7
Pabpc1
Gorasp2
9430015G10Rik
Klf6
Zfp869
Gpx1
Eif5
Phlda1
Snx17
Eif2b4
Ccl2
Mrpl44
1810013L24Rik
Taf4
Tra2a
Erdr1
Gtf2b
Setd5
Calm2
Pole4
Dync1i2
Kmt2e
Cnot1
Zfp36
Dstn
Itga5
Larp4
Napepld
Rsrp1
Insig1
Eif4a1
H3c1
H1f1
Itgb1
Smim10l1
Cdk12
H4c12
H2bc15
H2ac15
Phf12
Lmna
Ncl
Hexim2
Rsrc2
Kntc1
Ier5
Amn1
Selenop
Rap1b
Stat3
H3c7
H2bc9
Zfp963
Phlda3
Pdlim5
Emd
Col1a1
Sde2
Gm3435
Gm13285
Coq10b
H2bc3
Aaas
H2-L
H2-D1
Tmsb4x
Myh9
Scaf1
Rras
Tmed2
Csf1
Urgcp
Ppp1r15a
Plekha4
Ep400
Hmgb2
Nfe2l2
Aadacl2fm1
Zfp1
Gm13290
Gm13289
Hnrnpab
Chmp4b
H2ac12
Hif1a
Gapdh
Esyt2
Trib3
Zc3h6
Ndufs7
Resf1
Zfp868
Mbd6
Ddit3
Pkd1
Prcc
Jun
Crem
Retsat
Elmod3
Mknk2
Slc25a3
H1f0
Gcat
Zfp655
F3
Hmox1
Wsb1
Rdm1
Tob2
Atp6v0c
Cxcl5
Tmsb10
Gem
Rps12
Ptms
Eef2
Nufip2
Zbtb37
Rnft1
Actr3
Wnk1
Eif3a
Mettl25
Ccdc59
Eif3c
Eif4g2
Cfl1
Crebzf
Ppp1r2
Gls
Irf1
Gm13287
Opa1
Baiap2
Kmt5b
Adnp
Ywhag
Fstl1
Glul
Slbp
Dgat1
Tra2b
Rpl10a
Pprc1
Pdlim7
Chchd2
Csrnp2
Rheb
Gtf2a1
Usp48
Son
Gm36712
Gart
Snx5
Mgme1
Egr2
Ugdh
Map2k2
Sec61a1
Gadd45g
Pdss2
Trp53rkb
Rabgef1
Bach1
Arrdc2
Ctsl
Rnf19b
Mtf2
Atp2a2
Ldha
Slc9a1
Cpsf1
Zfp207
Sptan1
Birc2
Raf1
Ptpn6
Grcc10
Ptpn2
Csnk1a1
Chrac1
Srsf1
Hnrnpa1
H3c3
Cbx5
Zfp866
Map1lc3b
Ndel1
Top1
Morf4l1
Plekhg2
Gadd45a
Ddx59
Gm13275
Sp3
Lbh
G3bp1
Ptma
Mterf1b
Sfpq
Gm13288
Slc2a1
Klf2
Piezo1
Calr
Slc39a10
Phf23
Ep300
Rock2
Nfyc
Homer1
Kctd5
Ubxn1
Arl14ep
Pcna
Gm13279
Gm13278
Txnl1
Sod1
Eif2b5
Gsto1
Ddx39b
Mbnl1
Txn1
Arntl
Nsrp1
Zc3h10
Rpl41
Nsd3
Letm2
9530077C05Rik
Nedd8
Gmpr2
Pim3
Arih1
Sub1
Dynll1
Cpeb2
Taf13
Phb
Hmgn2
Adprh
Pcnp
H2-K1
Pknox1
Pbld2
Hnrnph3
Ahnak
Dusp2
Astl
Vegfa
Aff4
Hipk3
Atp6v1h
Gadd45b
Sppl2a
Sf3b1
Ufl1
Selenot
Egr3
Htra2
Dqx1
Ccdc88a
Zfp637
Galk2
Wbp4
Elf1
Acta2
Cops2
Gabpb2
Fasn
Sepsecs
Eif4e2
Sned1
Rabggtb
Frmd6
Hdlbp
Lrrc8a
Polr2m
Col4a2
Col4a1
Slc5a3
Mrps6
Rpl9
Lias
Tmem175
Slc25a32
Pten
Gak
Dcaf13
Rab5if
Gstp2
Rps3a1
Ets2
Vdr
Zfat
Mmaa
Chmp6
Nsfl1c
Hexim1
Npm1
Hnrnpa3
Prrc2a
Parva
Map2k4
Ube2j2
S100a10
Rps8
Rab11b
Ppm1a
Mtg1
Ifi211
5730455P16Rik
Adpgk
Rpl17
Fosl2
Sik2
Ubald1
Ncbp2
Gpx4
0610012G03Rik
Rmi1
Hnrnpk
Pigl
Ncor1
Kansl2
Pafah1b1
Tubb4b
Atf1
Lox
Rfx3
Hspa4
Dusp11
Ppp6c
Ap2m1
Ranbp2
Cct8
Tbcd
Ndfip1
Ccng1
Sharpin
Maf1
Gm35339
Sec62
Dpy19l4
Wdr70
Mmadhc
Hmgcr
Rabl6
Pkm
Arl8b
Psmd7
Pnp
Kat7
Eci1
N4bp2l2
Btaf1
Rab1a
Lrif1
Brwd1
Adnp2
Tut7
Plxdc1
P4ha1
Mrpl19
Dcp1a
Spindoc
Fam43a
Atp5g2
Rps27rt
Rab13
Zcwpw2
Rnf10
Oat
Cct2
Azi2
Socs3
Paxip1
Tmem87b
Clk1
Cox20
Tomm34
Stk4
Rbks
Babam2
Tcf25
Fbxl3
Cap1
Saraf
Hspa9
Aacs
Rfc4
Jak1
Mterf1a
Gars
Calu
Rps6
Tab1
Tle3
Plec
Angptl4
Nop14
Grk4
Plekho2
Rrn3
Rab7
Trmt44
Tkfc
Ddb1
Btrc
S1pr4
Ncln
Trib1
Pex14
Dffa
Crebl2
Uhmk1
Phf20l1
Ndufa9
Akap3
Rab33b
Ctdp1
Ankrd11
Gm13277
Ttc41
Hsp90b1
Elk4
Anln
St3gal2
Ywhae
Filip1l
Tmem79
Smg5
Arl15
Rdh14
Mrpl39
Chka
Gpr84
Atf6
Srrm2
Ndufs4
Ppp1ccb
Ppp1cc
G3bp2
Knl1
Cct4
Rnf34
Snx18
Rpl5
Serbp1
Degs1
Gstp1
Fem1b
Irs2
Fitm2
Stau1
Flcn
Luc7l
Cul1
Notch2
Secisbp2l
Gnas
Gmfb
Fosb
Ccnt1
Arf1
4930415O20Rik
Cotl1
Pitpna
Adrm1
Sugct
Mplkip
Kdm6b
Caprin1
H3f3a
Tm9sf3
Rpl38
Trmo
Puf60
Rplp1
Lrp6
AW549877
Rprd2
Cd164
Prnp
Prn
Med6
Arf4
Amdhd2
Zdhhc1
Ndufaf5
Esf1
Anapc5
Srp19
Nubp1
Nrf1
Cdkn2aipnl
Tsnaxip1
Ranbp10
Ilf2
Sox9
Memo1
Relb
Ppp4r3b
Pdia3
Catsper2
Nme1
Mif
Aven
Ube2h
Nde1
Marf1
Ing1
Mylip
Ero1a
Atg10
Tbc1d13
Klhl24
Tada3
Arpc4
Rraga
Mapkbp1
Gas1
Ube2d3
Prkar1a
Fscn1
Kif2c
Pdcd7
Kat6a
Zfp598
Twf1
Nptn
Ppp2cb
Cald1
Tent5c
Atp5o
Atp5g3
Fbxl18
Zc3h4
Tubb6
Alyref2
Jpt1
Slc12a4
Tmf1
Susd6
Washc4
Rbl2
Rad54l2
Csgalnact2
Pcmt1
Ndufb8
Lgals1
Mllt10
Pigq
Nhlrc4
Ahcyl1
Tmem248
Terf2
Trdmt1
Tpm4
Cnbp
Birc6
Rab43
Lnpep
Ddx19b
Zfp959
Snrpd3
Gucd1
Gatb
Dnajc16
Casp9
Dnajb12
Zfp644
Aff1
Trir
Ier5l
Get3
Bcl7b
Gmeb2
Peli1
Tmem88
Cenps
Rpl23
Gspt1
Smg8
Rbm3
Kpnb1
Arcn1
Eprs
Zswim6
Ube2g1
Map3k6
Pigu
Rbm33
Oga
Mthfd2
Arl4d
Usp16
Ankrd17
Usp38
Rel
Psmb2
Dcaf5
Rcn2
Hnrnpdl
Enoph1
Chordc1
Rpl13
Malsu1
Dennd6a
Drg2
Cpsf6
Nars
Mapk1ip1l
Copb1
Zc3h11a
Zbed6
S100a6
S100a5
Bclaf1
Arl2bp
Pomp
Ndufs3
Kbtbd4
Ahctf1
Seh1l
Ifrd2
Dip2b
Ube3b
Kctd10
Get4
Slc16a1
Ppp2r3a
Hnrnpm
Rgl1
Hmgn1
Fmc1
Arpc5
Zfp706
Zmat1
Ppp1cb
Aasdh
Bcl2l13
Rubcn
Rab21
Polg2
Ube2z
Trap1
Nsun6
Arl5b
Dhx33
Slc7a1
Krr1
E4f1
Slc7a5
Mapk1
Ccdc107
Flnc
Mff
Hnrnpc
Pskh1
Eif4ebp1
Cul5
Enc1
Camk2d
Trim39
Marchf5
Cpeb3
Nagk
Ube2l3
Tpp2
Pim1
Zfp119b
Sun2
Pold3
Tsfm
Arid5a
Snrpc
Rtn4
Pakap
Rpl15
Nkiras1
Vamp2
Rbm17
Oaz1
Dnttip2
Csrnp1
Bud13
Caprin2
Lemd2
Pradc1
Get1
Cct7
2610001J05Rik
Csde1
Tmem39a
Sart3
Rbbp6
Iscu
Dars
Ddx17
Golph3
Srcap
Kmt2d
Taf1d
Smad1
Psmd12
Fam193a
Dhx16
4931406C07Rik
Gm13276
Bhlhe40
Pdk4
Niban2
Wtap
Usp53
Txndc11
Slc5a5
Birc3
Srek1
Smarca4
Matr3
Lrrc58
Copz1
Ell2
Cd248
Creb1
Tmem11
Tmed5
Rpl22l1
Lims1
Frs2
Cstf3
Ccdc18
Smarca5
Ifnz
Ggps1
Arid4b
Ctdsp1
Plag1
Ube2v2
Serinc1
Trp53inp1
Lcn2