ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX735292 | Unclassified
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◣ SRX735292: Unclassified

◢ Cdk9: STRING

Tcstv3
Cldn34d
Il31ra
Calcoco1
Fyco1
Chac1
Nudt13
Phf12
Kpna1
Scrib
Prcc
Ccl4
Ccl3
Banp
Ddx23
Phb
Usp48
Ifrd2
Tmem125
Sspn
9430015G10Rik
Ifng
Pex14
Dffa
Abhd6
Mrpl19
Rptor
Brox
Aida
Dync1i2
Dusp2
Astl
Usp5
Cdca3
Fastkd1
Nop14
Grk4
S1pr4
Ncln
Pprc1
Ap2m1
Olfr806
Ccl1
Cpsf1
Snx17
Eif2b4
Sec61a1
Kif2c
Btrc
Cotl1
Nedd8
Gmpr2
Tmem88
Naa38
Cyb5d1
Wdr70
Unk
Mtg1
Sharpin
Maf1
Gm35339
Sympk
Foxa3
Xcl1
Dhx33
Opa1
Bub3
Phlda1
Psat1
Proser1
Nhlrc3
Lrrc59
Dnttip2
Fbxl18
Rpp30
Rpia
Zfyve19
Dnajc17
Cwc22
Zfp637
Atp5o
Mapkapk5
Chchd6
Dcps
Sphk2
Rpl18
Fam83e
Hspa5
Zfp189
Mrpl50
Odc1
Chmp4b
Clpb
Usp31
Pomp
Mmachc
Ccdc163
Dchs2
Med6
Scaf1
Rras
Capn15
Hsph1
Ap1g1
Mrpl44
Ormdl3
Dffb
Cep104
Nr4a1
Tmed2
Fam193a
Prr5l
Commd9
Gatb
Pigu
Kbtbd7
Chmp6
Vcpip1
Pafah2
Mff
Med27
Asmt
Rps19bp1
Arl14ep
Timm13
Ccp110
Rps20
Pcbp1
Trp53rkb
Csf2ra
Timm22
Aaas
Wnk1
Alg10b
Nfkbia
Krr1
Btbd19
Ube3c
Phf13
Kat7
Tmem11
Slc35b4
5730455P16Rik
N4bp2l2
Gsk3a
Ncbp2
0610012G03Rik
Cnot1
Lrif1
Htra2
Dqx1
Snw1
Il2
Herpud1
Ints9
Hmbox1
Gtf3c6
Cep128
Naa60
Crebl2
Rbl2
Ipo13
Pemt
Slc33a1
Lars
Tmem43
Chchd4
Oasl1
Hspa8
Tsnaxip1
Ranbp10
Nprl2
Cyb561d2
Ccdc77
Tnf
Lta
B4galt7
Rpl3
Nabp1
Tmem101
Ubxn1
Mettl25
Ccdc59
M6pr
Lemd2
Dexi
Clec16a
Nmt1
Tex14
Clptm1l
Calm1
Wrap53
Trp53
Psmd7
Atg101
Rcc1l
Sepsecs
Srek1ip1
Cwc27
Ifna13
Ggps1
Arid4b
Invs
Erp44
Bicd2
Sass6
Max
Aadacl2fm1
Rel
Stk25
Psmg3
Ythdf2
R3hcc1l
Prmt6
Tmem214
Ap2s1
Eef1a1
Acp2
Trap1
Pabpc1
Rab5c
Dnajc16
Casp9
Rabac1
Cmas
Palb2
Dctn5
Tmed9
Dph2
B4galt2
Atp6v0b
Tbcd
Shmt2
Cdk9
Snrnp27
Znfx1
Ctu1
Kat2a
Hspb9
Crtam
Yars
S100pbp
Slc27a4
C87436
Spty2d1
Nudt15
Retsat
Elmod3
Snrpd1
Tmem245
Stc2
Csf2
Edem2
Prim1
Srp68
Chordc1
Tnfsf8
Ap5s1
Slc7a11
Cltc
Tab1
Ndufa9
Akap3
Rdh14
Cipc
Trmt44
Cnih4
Prkcsh
Ccdc151
Eef1akmt4-ece2
Eef1akmt4
Alg3
Cenps
Trip4
Eapp
Ndufs4
Slc7a1
Cox7c
Enc1
Rangap1
Ube2j2
Pfdn5
Phf23
Dvl2
Gabarap
Tbck
Aimp1
Nup54
Vps50
Hepacam2
Snrpc
Rnf123
Mst1
Ncbp3
Fam227b
Dtwd1
Vps51
Tmem262
Btg1
Zcwpw2
Azi2
Nfkb1
Eif2b5
Drg2
Wdr36
Wwox
Zfpl1
Cdca5
Ndc1
Pcbp2
Togaram1
Klhl28
Rps21
Ubqln4
Lamtor2
Rab25
Pigq
Nhlrc4
Slc39a13
Celf2
Cluh
Sgms1
Sar1b
Mfn2
Gpr84
Smg8
Mrpl21
Ighmbp2
Mrpl35
Ccdc126
Nup153
Vrk1
Bud13
Psmc6
Mocs1
Tmem94
Thg1l
Zc3h11a
Zbed6
Nutf2
Klhl20
Nme1
Cdk7
Ptcd3
Polr1a
Nelfa
Zfp369
Gorasp2
1700092M07Rik
Wdr74
Ptcd2
Mrps27
Iqch
Aagab
Mphosph10
Mcee
Mrps25
Ufl1
Lrrc8a
Rad18
Atp5g2
Blmh
Psmd3
Rpl27
Cstf1
Aurka
Znrd1as
Znrd1
Psmb5
Slc35g3
Polr2a
Ttc4
Tarbp2
Map3k12
Ddx47
Fitm2
Ippk
Rab33b
Cct4
Mrps33
Cnot2
Ppp2r5b
Dgat1
Pole3
Dmap1
Zfyve1
4933430I17Rik
Kmt2d
Fam53c
2610001J05Rik
Slx4ip
Mkks
Snx18
Get4
Pex3
Adat2
Dhrs9
9130401M01Rik
Faf1
Fam149b
Ecd
Cog7
Zfp870
Map1lc3b
Tsfm
Tmem199
Poldip2
Cops8
Tkfc
Ddb1
Dcaf10
Dnajc11
Sec13
Ndufs7
Pcnp
Klhdc4
Mib2
Rps3a1
Dcp1a
Dus1l
Nup35
Gm3448
Gm3417
Tcte3
Ermard
Lrrc51
Taf12
Rhot1
Slc3a2
Stau1
Rad54l2
Hinfp
4833439L19Rik
Gspt1
Gtse1
Rexo2
Usp30
Tmem115
Zfp738
Mrpl39
Cox7a2
Atf6
Bod1
Ndufs3
Kbtbd4
Rps23
Cops7a
Tfap4
Rplp0
Vmn2r4
Rpl9
Lias
Ppp6c
Cct8
Btbd8
Fra10ac1
Ube2g2
Tysnd1
Ccpg1os
Ccpg1
Ifrd1
Kifc5b
Tspoap1
Tmem107
H2ax
Gapdh
Sars
Mettl9
1110004F10Rik
Slc4a2
Cdk5
Cdk5rap2
Wbp2
Syt3
Psmb2
Jak2
Psmb6
Mtres1
Cnot10
Mbd6
Ddit3
Nol10
Arfgef1
Trub1
Pdcd7
Sdad1
Zfp513
Mrpl58
Rpl22
Tcof1
Mterf1a
Frg2f1
Foxj3
Rpl30
Tpr
Odr4
Zfp296
Gemin7
Ndufs2
Adamts4
Aars2
Ttc13
Arv1
Slmap
G3bp1
Mrps15
Ints14
Gfus
Eif5
Hexim2
Man1b1
E130309D02Rik
Prpf4
Cdc26
Lat
Nsfl1c
Tut7
Rpl8
Commd5
Thoc1
Nek4
Rbm39
Eefsec
Tmem147
Rfc4
Srp19
Cdkn2aipnl
Cox6c
Gtf2h3
Eif2b1
Atf4
Tmed10
Kdm3b
Gid4
Cacybp
Dimt1
Rtn2
Actb
Vps72
Pip5k1a
Dhx30
Arid1a
Actr10
Plaa
Sdf2l1
Stx18
Mrpl30
Mitd1
Rbsn
Lman2
Ubxn11
Slc38a1
Cd52
Kmt2a
Eif2b3
Rab1a
Gmfb
Cops6
Phospho1
Eif4e2
Ptrhd1
Cenpo
Jrk
Rpl5
Rpl36
Micos13
Eps15
Secisbp2
Rbm34
Ppip5k2
Gin1
Tpgs1
Madcam1
Heatr5a
Mlec
Kctd5
Rabl6
Tcea1
Zar1l
Brca2
2210016L21Rik
Alkbh8
Fam187a
Eftud2
Ccdc103
Nemf
Lrwd1
Alkbh4
Sdhaf3
Mcl1
Nudcd1
Eny2
Mief1
Espl1
Atg16l1
Taco1
Diaph1
Ece1
Mpzl3
Fbxo48
Ptma
Ubr4
Cxcr6
Ddx5
Cep95
Actg1
Zc3h10
Rpl41
Zfat
Ctdp1
Mrpl12
Pcbd2
Rps11
Rpl13a
Tspan4
Polr2l
Sf3b2
Gal3st3
Ppp1r11
Ate1
Slc39a9
Erh
H3f3b
Rgl2
Sfxn5
Tatdn3
Nsl1
Mtrex
Dhx29
Aurkaip1
Thap4
Atg4b
Cant1
Snx19
Ric8b
Med17
Ddx1
Brf1
Them4
Ube2v1
Eif3g
Ciao3
Ahcy
Lsm12
G6pc3
Tsg101
Zbtb7b
Trak2
Gpaa1
Exosc4
Larp4
Arf3
Hjurp
A730008H23Rik
Hacd2
Rpl27a
Napg
Pa2g4
Dntt
Ubb
Ep400
Ints5
1810009A15Rik
Cdk5rap1
Lbhd1
Cep135
Nrde2
Tra2b
Knl1
Ints12
Gstcd
Zdhhc21
Zranb3
R3hdm1
Alkbh3
Fam83g
Rbm17
Tefm
Mars1
Rplp2
Pidd1
Smim13
Zbtb37
Nars
Trp53rka
Epn1
Ndufc2
Tmem127
Ciao1
Pigg
Ndufa10
Sema6a
Leng8
Ccdc174
Tchp
Iars
Zfp566
Zfp260
Pten
Fem1b
Nuf2
Rbm22
Lcorl
Pde6d
Cops7b
Rasa1
Pgs1
Adrm1
Tmem248
Aasdh
Gtdc1
Psd
Fbxl15
Smim8
Brwd1
Poglut3
Ppil4
Heatr6
Rad1
Brix1
Cnot8
Psmf1
Ddx46
Marchf5
Cpeb3
Xpc
Lsm3
Wdr25
Wars
Wdr5
Pan2
Taf9
Rad17
Ak6
Ptpn6
Grcc10
Gars
Rps13
Rnf220
Guf1
Ctbp1
Ybey
Mcm3ap
Ankrd46
Gtf2h4
Fam168a
Tti2
Snrpd3
Gucd1
Tfeb
Rhbdd3
Ewsr1
Txnl4b
Dhx38
Mre11a
Ankrd49
Cd3d
Ccdc184
Tyw3
Cryz
Zfp672
Tmem129
Tacc3
Sh3bp5l
Ndfip1
Zfp729a
Zfp148
Smim11
Gimap5
Adora2a
Uspl1
Epc1
Gtf2b
Egr2
Rabggtb
Myc
Lancl2
Stx8
Cfap52
Zfp606
Txlnb
Dis3l2
Lyrm2
Man2c1
Ndufb5
Mrpl47
Gtpbp2
Gas2
Unc45b
Nle1
Eif4a1
Nup155
Ap4e1
Rnf166
Ctu2
Mrpl34
Dda1
Rabggta
Appl2
Abhd8
Adck1
Pus3
Ddx25
Rdm1
Secisbp2l
Twf1
Zfp706
Ube2z
Psmd12
Plk3
Siah2
Stpg3
Nelfb
Pdia6
Gtf2h2
Fam118a
Mrps16
Dnajc9
Polk
Cert1
Zfp661
Mrps5
Calm3
Cdkl4
Arl8b
Ssbp1
Cul2
Cpped1
Wasf1
Cdc40
Prrg2
Nosip
Noc2l
Klhl17
Csde1
Alad
Golga4
Kif13b
Nup188
Dolk
Srsf2
Mfsd11
Ncdn
AU040320
Ube4a
Mrps2
1700007K13Rik
Zfp607b
Map3k10
Bub1b
Etl4
Atp2b2
Gm3435
Serbp1
Smarca4
Git2
Ankrd13a
Wdr34
Ccdc142
Itga2
Pbld2
Hnrnph3
Gabpb2
Trib1
Hmgxb3
Cd44
Arfgap1
Trmt5
Slc38a6
Mkrn2
Lrrc45
Cenpx
Prkch
Ndufab1
Vipas39
Ahsa1
Blcap
Pcif1
Eif3c
Ppih
Cnot4
Aftph
Psmd4
Txnl1
Trmo
Zfc3h1
Thap2
Slc35a1
Tbp
Psmb1
Desi2
Josd2
Aspdh
Nup214
Ankle2
Snrpe
Trmt10a
Mttp
Tubb5
Mdc1
Dnm1l
Exoc2
Rpf1
Tsen15
Cdc45
Edem3
Mrpl1
Gpam
Rce1
Srr
Smg6
Tsnax
Qtrt2
Ccdc191
Thyn1
Acad8
Erdr1
Slc25a32
Dcaf13
Bhlhe40
Spink10
Fbxo38
Ccz1
Pomt1
Trim23
Trappc13
Shld3
Dpf1
Esr1
Srsf1
Morf4l1
Pik3r1
Arfgap2
Ttc14
Cdiptos
Cdipt
Ift46
Exd2
Rapgef1
Rbm28
Pold3
Gtf2a2
Zc3hc1
Scfd1
Xrra1
Spcs2
Coa8
Bag5
Adat1
Tti1
Rprd1b
Sema7a
Ankrd40
Klhl18
Kif9
Nip7
Cog8
Taf11
Anks1
Tomm7
Prpsap1
Kdm8
L3mbtl2
Tpm1
Luc7l
Yipf2
Timm29
Mrpl40
Hira
Atxn1l
Clint1
Map3k4
Tars2
Prdm15
Cops9
Mzf1
Tpgs2
AW554918
Trib3
Snx5
Mgme1
Bod1l
Txndc15
Abhd10
Mis18bp1
Rpgrip1l
Fto
Mtf2
Arih1
Ccnq
Tmem252
Eif4ebp1
Dido1
Gid8
Tspan10
Nploc4
Wdr4
Commd2
C1qbp
Dlg4