ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620288 | NIH/3T3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◣ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Tcstv3
Sspn
Pgk1
Il31ra
Kpna1
Dchs2
Ccn1
Errfi1
Ifrd1
Serpine1
Egr1
Flnc
Ier2
Actg1
Thbs1
Nr4a1
Actb
Dusp1
Dusp5
Ptgs2
Tmem125
Cldn34d
Ubc
Junb
Vim
Mt2
Tpm1
Fos
Brox
Aida
Oasl1
Olfr806
Dnajb1
Abhd6
Sgk1
Homer1
Mbd6
Ddit3
Btg2
Ccn2
Hspa5
Gadd45g
Id3
Zyx
Mt1
Pknox1
Atf4
Ttc4
Ifna13
Csf1
Hspa8
Ugdh
Jun
Syn2
Dcaf5
Insig1
Zfp598
Gm13285
Gm13290
Gm13289
Gm13287
Gm13288
Gm13275
Gm13279
Gm13278
Ier3
Flot1
Vcl
Fn1
Arc
Btg1
Vmn2r4
Celf2
Hmox1
Mat2a
Timp2
Prickle1
Egr3
Tle1
Calm1
Gtf2i
Zfand5
Gm13277
Gm13276
Ifnz
Gm13272
Slc2a1
Asmt
Med23
Wwox
BC005537
Palld
Rubcn
Fyttd1
Pdlim5
Myh9
Tab1
Jund
Iqcn
Ier5
Tmsb4x
Lgals1
Plk2
Sf3a3
Mcl1
Dnaja1
Ccl7
Csf2ra
Trim50
Ddx5
Cep95
Map7d1
Rdm1
Smad1
Kdm2a
Fyco1
Nemf
Tex14
Itga5
Hmgcr
Tob1
Srxn1
Sqle
Gm3448
Gm3417
Tcte3
H4c2
H3c2
H2ac4
Gm3435
F3
Noct
Prdx1
Ap1g1
Aaas
Bod1l
Utp14b
Acsl3
Cav1
Zfp36
Tob2
S100a3
S100a2
Blmh
1810013L24Rik
Cdkn2aipnl
Nme1
H3f3b
Ermard
Sdc4
Mtf2
Mia2
Prkce
9030025P20Rik
Trib1
Zfat
Cltc
Arl8b
Phlda1
Rps29
Myl12a
Gtf3c3
Mrpl20
Gm13283
Mrps2
1700007K13Rik
Olfr938
Utp3
Hmgcs1
Lyrm2
Lrp12
Ftl1
Nfat5
Yap1
Tiparp
Lmna
Smo
Marveld1
Ppia
Ccl2
Atp2a2
Nipbl
Fth1
Rasl2-9
Ctnnb1
Rpl10a
Zswim6
Ankrd40
Drg1
Oxct1
Traf6
Fabp12
Id1
Arl14ep
Pbld2
Hnrnph3
Rel
Csrp2
Dnajb4
Fubp1
Ctnnd1
Cdc42ep3
Rgl2
Shld2
Glud1
Sesn1
Snx18
Fem1b
Notch2
Fosb
Lrp6
Nrf1
Fbxo7
Tpt1
Lbh
Kansl3
Fer1l5
Camk2d
Frg2f1
Foxj3
Mideas
Cldn12
Cpd
Gorasp2
Rcn2
H3c15
H3c14
H2ac19
H2ac18
H3c6
Ppp1r15a
Plekha4
Actr3
Ifi211
Sox9
Qser1
H3c11
H2bc22
H2ac22
H1f5
Them4
Vamp4
S100a6
S100a5
Glis1
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Zfp36l2
Rtn4
Rpl22l1
Azin1
Eml4
Dnajc24
Tox4
Rab2b
Eef1a1
Uspl1
Tcea1
Mrps33
Acap2
Mterf1a
Idi1
Cul1
Lsm11
Tnfrsf12a
Thoc6
Hcfc1r1
Cldn6
H2-DMa
Brd2
Htra2
Dqx1
Lox
Zfp142
Bcs1l
Sfi1
Hbegf
Nipsnap2
Surf6
Guca2b
Ulk2
Baiap2
Ptbp1
Uvssa
Opa1
Dgat1
Raf1
Ncbp2
0610012G03Rik
Gpatch8
Actn4
Slc35g3
Polr2a
Ccnl1
Rnft1
Txnrd1
Thap12
Enho
Prkca
Ppp2cb
Pds5b
Ankrd1
Nabp1
Ndufs7
Ccdc88a
Kif21b
Sec22b
Hrob
H4c3
H1f6
Cipc
Tbp
Psmb1
Slc25a3
Fasn
Neurl4
2810408A11Rik
Stx18
Atp6v1h
Ier5l
Cacybp
Rap2b
Pten
Fam133b
Tnfaip6
Mylip
Tab2
Gm13286
Rps20
Srsf1
Socs3
Mrps31
Rab34
Proca1
Atad2b
Ift46
Naa16
Hnrnph1
Nufip2
Mterf1b
Aacs
Cavin1
Nbea
Dlx2
Pdia3
Catsper2
Slc39a13
Uchl5
Ro60
Txn2
Timp1
H2bc21
H2ac21
H2ac20
Med7
Ddit4
Sh3glb1
Uhrf1bp1l
Sgcd
Mapkbp1
Agk
D3Ertd751e
Cyp51
Galk2
Cops2
Ythdf2
Tef
Cebpb
Bhlhe40
Slc25a32
Dcaf13
Lrig2
Medag
Rpl3
Cfl1
Sbno2
Rhoq
Hrh2
Ubb
Faf1
Wdr25
Wars
Wdr70
Rtn3
Vpreb1
Top3b
Pcbp2
Fus
Rhob
Gadd45b
Apc2
Pabpc4
Ddhd2
Rps15
Creb1
Ubtf
Pex2
Eci1
Esyt2
Sertad1
Tlcd2
H4f16
H2aj
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
H4c14
H2bc6
Cxcl1
Eif1
Cwc22
H4c4
H1f2
Klf7
H1f4
Eapp
Ube2a
Hnrnpa2b1
Cbx3
H3c13
H2bc18
Srsf7
Ppp1r10
Mrps18b
H2bc12
Arf6
H4c17
Tsc22d1
Nfkbia
H4c8
H3c8
H2ac10
Taf12
Slc35e3
Poldip3
H4c9
H2bc11
H2ac11
Raly
Fam53c
Zfp143
Gtf3c6
Mdm2
Sp1
Cited2
Srsf2
Mfsd11
Adamts1
Fam227b
Dtwd1
H3c10
Chac1
H2bc13
H2ac13
Zfp36l1
H4c6
H1f3
Rplp0
Sirt4
Cebpd
Cdh12
Sqstm1
Slc38a2
Herpud1
Cdkn1a
Nfkbiz
Cirbp
Pnrc1
Unk
Scrib
Ppp1r12a
H2bc14
Znfx1
Lima1
Txnip
H4c1
Pcif1
Calcoco1
Tuba1c
Srsf5
Odc1
Fam174c
Efcab2
Clec2d
Yeats4
Ptp4a1
Tmem107
Tuba1a
Sik1
Rbm39
Litaf
H2bc4
H2ac6
H2ax
Rgs2
Srsf6
Hsp90aa1
Ddx3x
Pcbp1
Srsf3
Slc25a4
Nudt13
Esr1
Tuba1b
Slc3a2
Ywhaz
Epc1
Tti2
Ddx23
Hsp90ab1
H4c11
Tmem123
Banp
Nup62
Il4i1b
Atf5
Ints6
Vmn2r102
Serinc3
B2m
Cdc42
Rptor
Pabpc1
9430015G10Rik
Klf6
Zfp869
Gpx1
Eif5
Snx17
Eif2b4
Mrpl44
Taf4
Tra2a
Erdr1
Gtf2b
Setd5
Calm2
Pole4
Dync1i2
Kmt2e
Cnot1
Dstn
Larp4
Napepld
Rsrp1
Eif4a1
H3c1
H1f1
Itgb1
Smim10l1
Cdk12
H4c12
H2bc15
H2ac15
Phf12
Ncl
Hexim2
Rsrc2
Kntc1
Amn1
Selenop
Rap1b
Stat3
H3c7
H2bc9
Zfp963
Phlda3
Emd
Col1a1
Sde2
Coq10b
H2bc3
H2-L
H2-D1
Scaf1
Rras
Tmed2
Urgcp
Ep400
Hmgb2
Nfe2l2
Aadacl2fm1
Zfp1
Hnrnpab
Chmp4b
H2ac12
Hif1a
Gapdh
Trib3
Zc3h6
Resf1
Zfp868
Pkd1
Prcc
Crem
Retsat
Elmod3
Mknk2
H1f0
Gcat
Zfp655
Wsb1
Atp6v0c
Cxcl5
Tmsb10
Gem
Rps12
Ptms
Eef2
Zbtb37
Wnk1
Eif3a
Mettl25
Ccdc59
Eif3c
Eif4g2
Crebzf
Ppp1r2
Gls
Irf1
Kmt5b
Adnp
Ywhag
Fstl1
Glul
Slbp
Tra2b
Pprc1
Pdlim7
Chchd2
Csrnp2
Rheb
Gtf2a1
Usp48
Son
Gm36712
Gart
Snx5
Mgme1
Egr2
Map2k2
Sec61a1
Pdss2
Trp53rkb
Rabgef1
Bach1
Arrdc2
Ctsl
Rnf19b
Ldha
Slc9a1
Cpsf1
Zfp207
Sptan1
Birc2
Ptpn6
Grcc10
Ptpn2
Csnk1a1
Chrac1
Hnrnpa1
H3c3
Cbx5
Zfp866
Map1lc3b
Ndel1
Top1
Morf4l1
Plekhg2
Gadd45a
Ddx59
Sp3
G3bp1
Ptma
Sfpq
Klf2
Piezo1
Calr
Slc39a10
Phf23
Ep300
Rock2
Nfyc
Kctd5
Ubxn1
Pcna
Txnl1
Sod1
Eif2b5
Gsto1
Ddx39b
Mbnl1
Txn1
Arntl
Nsrp1
Zc3h10
Rpl41
Nsd3
Letm2
9530077C05Rik
Nedd8
Gmpr2
Pim3
Arih1
Sub1
Dynll1
Cpeb2
Taf13
Phb
Hmgn2
Adprh
Pcnp
H2-K1
Ahnak
Dusp2
Astl
Vegfa
Aff4
Hipk3
Sppl2a
Sf3b1
Ufl1
Selenot
Zfp637
Wbp4
Elf1
Acta2
Gabpb2
Sepsecs
Eif4e2
Sned1
Rabggtb
Frmd6
Hdlbp
Lrrc8a
Polr2m
Col4a2
Col4a1
Slc5a3
Mrps6
Rpl9
Lias
Tmem175
Gak
Rab5if
Gstp2
Rps3a1
Ets2
Vdr
Mmaa
Chmp6
Nsfl1c
Hexim1
Npm1
Hnrnpa3
Prrc2a
Parva
Map2k4
Ube2j2
S100a10
Rps8
Rab11b
Ppm1a
Mtg1
5730455P16Rik
Adpgk
Rpl17
Fosl2
Sik2
Ubald1
Gpx4
Rmi1
Hnrnpk
Pigl
Ncor1
Kansl2
Pafah1b1
Tubb4b
Atf1
Rfx3
Hspa4
Dusp11
Ppp6c
Ap2m1
Ranbp2
Cct8
Tbcd
Ndfip1
Ccng1
Sharpin
Maf1
Gm35339
Sec62
Dpy19l4
Mmadhc
Rabl6
Pkm
Psmd7
Pnp
Kat7
N4bp2l2
Btaf1
Rab1a
Lrif1
Brwd1
Adnp2
Tut7
Plxdc1
P4ha1
Mrpl19
Dcp1a
Spindoc
Fam43a
Atp5g2
Rps27rt
Rab13
Zcwpw2
Rnf10
Oat
Cct2
Azi2
Paxip1
Tmem87b
Clk1
Cox20
Tomm34
Stk4
Rbks
Babam2
Tcf25
Fbxl3
Cap1
Saraf
Hspa9
Rfc4
Jak1
Gars
Calu
Rps6
Tle3
Plec
Angptl4
Nop14
Grk4
Plekho2
Rrn3
Rab7
Trmt44
Tkfc
Ddb1
Btrc
S1pr4
Ncln
Pex14
Dffa
Crebl2
Uhmk1
Phf20l1
Ndufa9
Akap3
Rab33b
Ctdp1
Ankrd11
Ttc41
Hsp90b1
Elk4
Anln
St3gal2
Ywhae
Filip1l
Tmem79
Smg5
Arl15
Rdh14
Mrpl39
Chka
Gpr84
Atf6
Srrm2
Ndufs4
Ppp1ccb
Ppp1cc
G3bp2
Knl1
Cct4
Rnf34
Rpl5
Serbp1
Degs1
Gstp1
Irs2
Fitm2
Stau1
Flcn
Luc7l
Secisbp2l
Gnas
Gmfb
Ccnt1
Arf1
4930415O20Rik
Cotl1
Pitpna
Adrm1
Sugct
Mplkip
Kdm6b
Caprin1
H3f3a
Tm9sf3
Rpl38
Trmo
Puf60
Rplp1
AW549877
Rprd2
Cd164
Prnp
Prn
Med6
Arf4
Amdhd2
Zdhhc1
Ndufaf5
Esf1
Anapc5
Srp19
Nubp1
Tsnaxip1
Ranbp10
Ilf2
Memo1
Relb
Ppp4r3b
Mif
Aven
Ube2h
Nde1
Marf1
Ing1
Ero1a
Atg10
Tbc1d13
Klhl24
Tada3
Arpc4
Rraga
Gas1
Ube2d3
Prkar1a
Fscn1
Kif2c
Pdcd7
Kat6a
Twf1
Nptn
Cald1
Tent5c
Atp5o
Atp5g3
Fbxl18
Zc3h4
Tubb6
Alyref2
Jpt1
Slc12a4
Tmf1
Susd6
Washc4
Rbl2
Rad54l2
Csgalnact2
Pcmt1
Ndufb8
Mllt10
Pigq
Nhlrc4
Ahcyl1
Tmem248
Terf2
Trdmt1
Tpm4
Cnbp
Birc6
Rab43
Lnpep
Ddx19b
Zfp959
Snrpd3
Gucd1
Gatb
Dnajc16
Casp9
Dnajb12
Zfp644