ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9144814 | 3T3-L1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◣ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Slc35g3
Polr2a
H4f16
H2aj
Cxcl1
H3f3b
Cwc22
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
H3c15
H3c14
H2ac19
H2ac18
H4c3
H1f6
Slc35e3
Yeats4
H1f2
H4c14
Tob1
H3c13
H2bc18
Eif1
H4c17
Ftl1
H2bc6
H4c4
Cxcl5
Tuba1a
Mt1
Tsc22d1
Arf6
Nfkbia
Sp1
Kmt5b
Unk
H4c8
H3c8
H2ac10
Hmgb2
H1f4
H4c6
H1f3
Sned1
Pnrc1
Angptl4
Mat2a
Adamts1
Clec2d
Smim10l1
Txnip
Nup62
Il4i1b
Atf5
Col1a1
Atf4
Zfp36l1
Zfp36l2
Sqstm1
Mdm2
Fth1
Fam43a
B2m
Slc5a3
Mrps6
Uspl1
Arrdc2
Srsf7
Ints6
Jund
Iqcn
H3c11
H2bc22
H2ac22
H1f5
Tuba1b
Hmgn2
Cebpd
Ppp1r10
Mrps18b
H2bc12
H4c9
H2bc11
H2ac11
Efcab2
Mmp2
Nsd3
Letm2
Pcbp1
Ddit4
Klf7
H2bc21
H2ac21
H2ac20
Eef1a1
Gm3448
Gm3417
Tcte3
Ermard
Poldip3
Ubc
Junb
Slc25a4
Selenop
Resf1
Srsf3
Ulk2
Cited2
Brpf3
Ptms
Ppp1r12a
Tex14
Btg1
Vim
Irf1
Son
Gm36712
Gart
Actb
Klhl24
Slc39a10
Pnp
H3c6
Cebpb
Epc1
Napepld
Ddx5
Cep95
Taf4
H1f0
Gcat
Rpl3
Cdkn1a
Ddah2
Rrp36
Uhmk1
Pdf
Tmsb10
Ppia
Cdk12
Ddx3x
Hexim2
Sec62
Ccng2
H4c2
H3c2
H4c1
Tcstv3
Slc38a2
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Csrnp2
Gm13285
Gm13290
Gm13289
Srsf6
Rap1b
Pcif1
Cox20
Urgcp
Wsb1
Sp3
Dip2b
Zfp1
Fbxl3
Phlda3
Ctnnb1
Nde1
Marf1
Fus
Sik1
Col1a2
Prdx1
Nrf1
Ubb
Fam53c
Calm1
Hnrnph1
Zfp866
Rnf103
Zfp655
Zfp963
Dennd6a
Hnrnpa2b1
Cbx3
Tmem223
Tmem179b
Eif4g2
Odc1
Timp2
Serinc3
Gfpt1
Rhou
Cpsf6
Nfat5
9530077C05Rik
Anln
Atp6v0c
Amdhd2
Hmgn1
Recql4
Lrrc14
Gadd45a
Amacr
Sun2
Gadd45gip1
Zfp207
5730455P16Rik
Eif3a
Dynll1
Gm13287
Gm13275
Gm13288
Gadd45b
Cplane1
Ccl7
Ankrd37
Ddx17
Slc5a6
Atraid
H2ax
Mylip
Slc43a2
Hsp90aa1
Rsrc2
Kntc1
Rfc4
Ssbp4
Bach1
Sdc4
Hexim1
Gpr19
Ier5l
Mob1a
Srsf2
Mfsd11
Pdss2
Atp5g3
Frs2
Mmadhc
Atg10
Raly
Calm2
Nfyc
Rgl2
Ep300
Zfp41
Hif1a
Ahnak
Plxdc1
Zfp236
Mgst1
H2-DMa
Brd2
Gm13279
Gm13278
Gm13277
Crebrf
Tmem65
Ywhae
Glg1
Rbm39
Trp53inp1
Ubn2
Rnpc3
Fam162a
Ccdc58
Rplp0
Ppm1a
Dyrk1b
Wbp4
Elf1
Npm1
Rmi1
Hnrnpk
Acyp2
Tnks2
Mrpl53
Gab1
Zfp143
Gpx1
Cltc
Tmem183a
Eapp
Atf1
Zfand5
Litaf
Zfp868
Gm13276
Ifnz
Nckap5l
Tbc1d13
Rgs2
Plpp3
Cbx7
Eci1
Fnta
Chrac1
Rasl11b
Zfp869
Rsrp1
Nt5c2
Itfg2
Wwp2
Znfx1
Morf4l1
Mllt10
Vamp8
Ctsl
Cldn34d
Rfx3
Ccng1
Camk1
Zfp740
Csad
Pkn1
Sik2
Kctd20
Rab5a
Zfp248
Relb
Itm2b
Khk
Hsp90ab1
Mcur1
Tmem125
Mak16
Tbrg1
Ier3
Flot1
Brwd1
Msantd2
Wdr19
Khsrp
Pcmtd1
Tasor
Agbl3
Pcyox1
Gmeb2
Csnk2a1
Hipk3
Cdkn2aip
Herpud1
Ccl2
Sppl2a
Vamp2
Marchf7
Kansl1
Zfp605
Gtpbp6
Oga
Nabp1
Arhgap12
Tm9sf3
Lrrc58
Samd9l
Cap1
Acin1
1700123O20Rik
Lyplal1
Plk2
Slc3a2
Aga
Cirbp
Fam174c
Amn1
Retsat
Elmod3
Arl2bp
Ttc7
Lrrc61
H2ac4
Ndufb8
Mtif2
Hmox1
Calr
Rock2
Cct2
Clk1
Dusp10
1700056E22Rik
Gpr85
Lbh
Gnas
Sgo1
Pdcd4
Nr3c2
Csf1
Tnp2
Socs1
Ccdc91
Mknk2
Gstp2
Gstp1
Sugp1
Mau2
Tnrc6c
Arpc1b
Zfp319
Usb1
Psap
Patj
Sspn
Sirt4
Cul5
Fbxo15
Timm21
Ptpn2
Phf10
Wnk1
H2-K1
Adnp2
Map2k7
Klf6
Cpeb2
Sec61a2
Zfp397
Fn1
Tpk1
Vdac3
Nup107
Slc35b2
Zbed3
Nop53
Fscn1
Hnrnpdl
Enoph1
Dhrs7
Brd1
Klhdc1
Praf2
Inafm1
Ptma
Gng12
Btg2
Siah1a
Nop2
Asah2
Dnajb4
Fubp1
Pabpc1
Gas1
Rtn4
Wtap
Timmdc1
Ephb4
Rcn2
Cat
Maf
Mt2
Raf1
Taok1
Chd4
Ilkap
Spr
BC005537
Glul
Atp2a2
Rab1a
Ppp1ccb
Ppp1cc
Znrf1
Cutc
Cox15
Sox4
Gna12
Map1lc3b
Tmf1
Sft2d3
Mphosph9
2810006K23Rik
Wwc2
Tmem87a
Ganc
Pim3
Pigl
Ncor1
Prkag1
Zfp68
A430033K04Rik
Dgcr6
Stat3
Gtf2a1
Dynll2
Mrpl2
Klc4
Cul7
Sf3b4
Trim28
Cul3
Snai1
Gcc1
Arf5
Fscn3
Kdm3b
Slc18a1
Atp6v1b2
Cpne2
Prrc2a
Pan3
Gtf2b
Rprd2
Bri3
Rybp
Map2k2
Sptan1
Ndfip1
Senp5
Ppdpf
Zfyve16
Pck2
Ralbp1
F3
Lrp6
Ube2l3
Otub1
Epc2
Cd63
Ppp1r3c
Tmem199
Poldip2
Tmem209
Ssmem1
Txndc15
Pdcl
Rhob
Lmna
Oxsm
Ngly1
Nuak1
Klhdc2
Scamp3
Ttk
Adprh
Tcf25
Plec
Lgals1
Gxylt2
Tra2a
Socs3
Ppp2r3a
Cdkn2b
Cyth2
Rnf14
Ube2b
Cdkl3
Zc3h6
Gem
Ilf2
Jpt1
Dazap2
Tomt
Lamtor1
C3
Tlk2
Prrc2b
Ppa2
Erdr1
Trmt44
Tax1bp1
2700081O15Rik
Pkd1
Errfi1
D5Ertd579e
Nfkbiz
Kctd5
Ubxn1
Elk4
Micu3
2310009B15Rik
Dnaja1
Ppp1r2
Flcn
Tnfaip2
Zfp617
Rhog
Birc2
Smad1
Cd248
Vasn
Klf11
Lasp1
Zfp69
Mmp11
Chchd10
H3c10
H2bc13
H2ac13
H2bc14
Upf3a
Lig3
B3gnt9
Kansl2
Hlcs
Tgfbr3
Plin4
Dyrk1a
Yeats2
Med28
Rnf19b
1810058I24Rik
Fbxo6
Cblb
Polg2
Paip2
Itgb1
Sod1
Irs2
Bmt2
H2bc4
H2ac6
Klf2
Pkd2
Pura
Traf4
Pccb
Plcg1
Mcl1
Galk2
Cops2
Rfx1
Mos
Tusc3
Adamts5
Taf12
Tmsb4x
Hnrnpm
Usp53
Rpl35a
Iqcg
Gbe1
Zfp384
Nr2c2
Uhrf2
Ttc17
Polb
Gsto1
Kansl1l
Ypel3
Tbx6
Srsf5
Palld
Ubald1
Aven
Gtdc1
Gamt
Dazap1
Cdc42ep3
Nsmf
Ppp4r3b
P4hb
Ndst2
Adck2
Nfatc3
S100a10
Pcmt1
Lats1
Necap1
Slc12a2
Rnf10
Dlgap4
Cpt1b
Chkb
Fzd1
Pot1a
Ddx39b
Lrif1
Ulk1
Ctsb
Baiap2
Tomm34
Stk4
Nrip1
Cstb
Pih1d1
Aldh16a1
Adnp
Ddx59
H3f3a
Ctdsp1
Ssbp1
4833420G17Rik
Strn4
Fkrp
Il10rb
Fstl1
Mmaa
Ube2v2
C330018D20Rik
Akap1
Sike1
Atxn1l
Ksr1
Thap1
Mphosph6
Rtkn
Cdc42
Zbtb37
Atp5g2
Nrbp1
Arhgdia
Rufy1
Zbtb44
Cdkn1b
Vps54
Id1
Arl15
Fmc1
Zfp821
Nipsnap2
Pole4
H4c12
H2bc15
H2ac15
Pcf11
Gpr155
Rbm5
Troap
Tmem237
Zbtb11
Zcwpw1
Mepce
Trmt1l
Swt1
Dennd4b
Tef
Patz1
Kmt2e
Sub1
Arrdc3
Trmt10c
Yme1l1
Mastl
Nudt4
Lyz2
Tmem62
Ywhaz
Dusp11
Sdhaf2
Mef2a
Cpsf7
Rpl26
Dync1li2
Thap7
Scand1
Cnbd2
Atp6v1g1
Aff4
Ccni
2010109A12Rik
Dennd6b
Retreg2
Cnppd1
Crot
Per3
Nfe2l2
Bbs2
Ripor1
Akap8
Rab11b
Lox
St3gal2
Zmat1
Pick1
Sde2
Rplp1
Rbm12
Cpne1
Zfp438
Orc4
Mbd5
Maged1
Pxdn
Tti2
Rbm4b
Zfp672
Kpna2
Tdrd1
Ccdc186
Npm3
Snrpb
Homer3
Rasl11a
Boc
Fam227b
Dtwd1
Zfat
Lemd2
Mtmr2
Mrtfb
Pdpk1
Snn
Zfp423
Selenot
Nsfl1c
Seh1l
E4f1
Cers5
Bdnf
Kbtbd3
Aasdhppt
Lifr
Tmem170
Rnf122
Srbd1
Frmd6
Ppp3cb
Cebpg
Drg1
Asb8
Smarcd1
Cdkn2a
Zfp11
Pink1
Kif13a
Ptpn6
Grcc10
Csnk1a1
Phykpl
Haus1
Atp5a1
Clic1
Usp40
Specc1l
Tnfsfm13
Tnfsf12
Hoatz
Msh5
Memo1
Lnpep
Rbm14
Gm21992
Slc29a3
Usp32
Slc25a15
Lrrk2
Pafah1b1
Caprin1
Dusp7
Col3a1
Zfp703
Txnl1
Kdm3a
Coq9
Ciapin1
Ggnbp2
Rnf146
Dzip3
Cip2a
Tmem128
Gnpat
2810004N23Rik
Grsf1
Pcgf3
Mppe1
Iqcc
Dcdc2b
Ccdc28b
Trib3
Slc9a1
Fasn
Trir
Get3
Ankrd17
Nras
Rc3h2
Osmr
Dtwd2
Ei24
Ccnt1
4930415O20Rik
Zfp959
Hp1bp3
Lyrm2
Alas1
Ttc26
Fbxl5
Cdc42bpa
Tm2d1
Ptrhd1
Cenpo
Ubr5
Kiz
Zfp523
Atxn7l3
Slc16a6
Arsg
Ypel5
Arl6
Tpt1
Ep400
H2ac12
Clk4
BC049762
Sema4c
Eif3d
Fam168b
Gsk3b
Gpr137
Bad
Src
Mfap3
Fam114a2
1810013L24Rik
Parva
Kat6a
Bcl7b
Aplp2
Ythdf3
Camkk2
Luc7l2
Vps37a
Cnot7
Ddx6
Rcbtb2
Slc1a5
Smarcc2
Hoxd8
Usp24
Flywch1
Vdac1
Ubr3
Kdm5b
Arhgap35
Bptf
H4c11
Phf23
Rabl6
Usp38
Nagk
Gabarap
Capza2
Ube2q1
Cxcl12
Plekhm3
Rbms1
Plscr4
Eif5
Nubp1
Ubr2
Myo5a
Rab34
Atf2
Proca1
Rpl23a
Tbc1d20
Rabif
Eef1g
Wdfy3
Nsun3
Lcor
Aaas
Pdlim7
Zc3h11a
Zbed6
Sbf2
Poglut3
Hilpda
Pja2
Rpl6
Bsg
Elp5
Ctdnep1
Spag6
Fads2
C1galt1
Osr2
Tfdp1
Aox1
Sesn2
Nfu1
Gm5741
Dhps
B4galt5
Rpf1
Tubg1
Retreg3
Ldlrad3
Pcmtd2
Gm20346
Anp32a
Spats2
Sox9
Rtn3
Mettl9
Zbtb2
Rbm6
Kif20a
Brd8
Vps35
Orc6
Smurf1
Mkrn2
Ephb3