ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX236483 | ES cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◣ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Tcstv3
Kpna1
Brox
Aida
Il31ra
Cldn34d
Vmn2r102
Gtf3c6
Dchs2
Sspn
Eapp
Ube2j2
H2bc4
H2ac6
Drg2
Dcp1a
Taf12
Smim17
Sfi1
Csf2ra
H3c6
Abhd6
Olfr806
Mrpl39
Ap1g1
BC107364
Tti2
Tex14
Aadacl2fm1
Sirt4
H2bc6
H4c4
Ifna13
Wwox
Txnip
H4c6
H1f3
H4c14
Uba2
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
H2bc12
H2ac12
Rbm17
H4c8
H3c8
H2ac10
Dnttip2
Cacng2
Rdm1
Tmem107
Agk
Atp6v1h
Slc29a1
Mymx
Fyco1
Alyref2
Tmem270
H2ax
H3c13
H2bc18
Mrpl44
Sema4b
Zfp143
H1f2
Scnn1g
Mrpl1
Smg8
Hdhd3
Esr1
Ccdc83
Ndufs7
Ep400
Trp53rkb
H3c15
H3c14
H2ac19
H2ac18
Ndufc2
Mybpc3
Mybl2
Ints12
Gstcd
Raf1
Cryzl2
H4c9
H2bc11
H2ac11
Dmap1
Pafah2
Ndufaf5
Esf1
Jph2
Ap3s2
Irgc1
Rbpj
Hsd17b11
Rnf125
Gm5820
Npas4
Fbxo9
Cilk1
Wwp1
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Eif4e2
Rps19bp1
Sf3a3
Tph2
Spp1
Ints10
H4c3
H1f6
Med23
Klhl20
Utp3
Spats1
Nme1
Ntn5
Megf8
Nuf2
Tnrc6b
Pipox
Ints1
Gdf3
Cltc
Mtf2
Trmt44
Gorasp2
Rab33b
Oasl1
Ndufs3
Kbtbd4
Zfp609
Ppil3
Nif3l1
Cpsf1
Sntb2
Fam149b
Ecd
Ppp1r10
Mrps18b
H4c11
Irak2
Lrrc59
Palb2
Dctn5
Dhx8
Gm3776
Mrpl21
Ighmbp2
Poldip3
Scrib
Nsa2
Gfm2
Gins3
Scarf1
Rilp
Ccdc107
Bcl2l1
Tpm1
Opa1
Ndufaf1
H3f3c
Tnks1bp1
Snrpe
Rbm34
Vps28
Ppid
Dhx16
Ncam1
Cep85
Sde2
1190007I07Rik
Slc33a1
Rint1
Pus7
Sox2
Jam2
Adnp
Ptpn6
Grcc10
Mtg1
H2bc3
Mettl25
Ccdc59
H3c3
Vps51
Tmem262
Sec24d
Tafa5
Chrnb2
Dhx30
Kcnk9
H2ac4
Mlf2
Cacnb3
Chgb
Mrps21
Etl4
Rimbp3
Zyg11a
Rubcn
Fyttd1
Gbx1
Trap1
Trp53rka
Hrh2
Aaas
Rabggtb
Kdm6b
Snrpc
Eps15l1
Msh4
Gpatch8
Ppp1r11
Capns1
H4c12
H2bc15
H2ac15
Cdkn2aipnl
Atg16l1
Tubg1
Retreg3
Zfp13
Gna15
Lyzl6
Wdr36
Tex19.1
H3c10
H2bc14
Tmem101
Hmgxb4
Cdiptos
Cdipt
Atp5k
Zbtb37
Ttc14
Edc4
Ttc25
Stx18
Atad2b
Sost
Arid5b
Mterf1b
Gjc1
Rptor
Cipc
Zfp638
Cdk5rap1
Dus1l
Ybey
Mcm3ap
Mrps18c
Helq
Atp6v0d1
Agrp
Mrps28
Pou5f1
Polr2j
Psmg3
Slc39a3
Pigc
4930558K02Rik
Surf6
Nos3
Svop
Ndufb8
Trir
Get3
2310057M21Rik
Srsf7
Ints5
1810009A15Rik
Det1
Trmu
Ndufa9
Akap3
Dus2
Ddx28
Ddx56
Ddx55
Top1mt
Golga7b
Zmym1
Usp30
Tekt2
Adprhl2
Nol10
Fam169a
Tkfc
Ddb1
Lrp6
Cdc16
Mrps15
Lypla1
Hsd11b2
Ubc
Morf4l1
Plxdc1
Cbx7
Chd8
Ren2
Ren1
Gstt2
Josd2
Aspdh
Zcwpw2
Azi2
Arf4
Arhgef12
Aqp8
Ifi30
H3c7
H2bc9
Yipf2
Timm29
Sphk2
Rpl18
Fam83e
Zfp532
Tmem95
Kctd11
Gramd4
H2bc13
H2ac13
Ppp1ccb
Ppp1cc
Sec22b
Cast
Tas1r3
Pou2f2
Crym
Abca14
Snx18
Ttc4
Twistnb
Pigm
Ccdc88a
Pex3
Adat2
Naa35
Rac3
Cntn2
Znfx1
Lima1
Tsfm
Dusp12
Triml2
Fbxl22
H4c17
Tbcd
Psmd3
Celf2
Tmem222
Rrm1
Npy1r
Hgfac
Srp68
Tchp
Necap1
Rapgef1
Angptl6
Slc15a1
Abca3
Abca17
Chordc1
Dffb
Cep104
Man2b2
Ciao3
Zbtb45
1700008O03Rik
Def6
Rad54l2
Arcn1
Gpr19
Rpl27
Taco1
Ift46
Nol8
Cenpp
Spry1
Nup54
Bms1
Sod2
Xrcc5
Rabggta
Fam220a
Comtd1
A430057M04Rik
Kbtbd6
Fes
Ephb1
H4f16
H2aj
Paxip1
Zfp598
Nutf2
B4galt7
Ccdc174
Eif5a
Zfp113
Git1
Ankrd13b
Pvr
Hoxb13
Kctd5
Galk2
Cops2
Fitm2
Anapc5
Faf1
Htt
Ints4
Rbm28
Nceh1
Gstm6
Banp
Trip4
Ropn1l
Pomt1
Sgca
Tmem221
Tmed9
Tnfsf13
Wdr18
L1td1
Cobl
Tob2
Rpl5
Pigu
Dhx33
Gatad2b
Tars2
Gne
Slc36a1
Armc7
Hemk1
Mterf4
6430571L13Rik
Ung
Zfp57
Alkbh2
Gm3448
Gm3417
9030025P20Rik
Gpx1
Epn1
Mrps33
Txn2
Sema3b
Fam177a2
Fam177a
Ankrd35
Tmem242
Eif2b3
Lsg1
Tmem191c
Lhfpl5
Setd5
Dync1i2
Slc9a1
Gabpb2
Ctdsp1
Stx16
Fndc3b
Mnat1
B4galt3
Mc5r
Gjb3
Piezo1
Sdad1
Mrpl35
Phactr4
Acp6
Smim8
Crocc
Zfp710
Tdgf1
Nanog
Epp13
Ccdc110
Bfsp1
Zc3hc1
Snrpd1
Dennd6b
Zranb1
Fntb
Med4
Hint3
Nfatc4
Dcaf5
Med27
Dnajc11
Psd
Fbxl15
Sec13
A930018P22Rik
Pspn
Alkbh7
Mtmr6
Uqcrc1
Wdr24
Errfi1
Rab1a
Ssbp1
Zscan25
Kbtbd7
Alpl
Ing1
Cwc25
Timm50
Jtb
Cdk20
Gp1bb
Gm5544
Rnf216
Vps18
Pde6d
Cops7b
Tomm7
Gstm1
Kdm1a
Gcnt2
Spata24
H4c2
H4c1
H3c1
H1f1
Dpy19l4
Ints3
Ccar1
Cnot10
Zbtb40
Afmid
Tk1
Nudt13
Get1
Acp2
Mphosph10
Mcee
Sar1b
Ddx20
Eif3g
Dtd1
Flnb
Sptbn1
Sppl2a
Htra2
Dqx1
Snw1
Vpreb1
Top3b
Klhdc4
Ift22
Sec23a
Gemin2
Chd9
Mllt6
Nt5dc2
Liph
Cebpe
Esyt2
Rhot1
Parl
Ssr2
Spic
Krr1
Riok1
Cage1
2700062C07Rik
Kdm5b
Pxk
Ndufv1
Myo10
Dstyk
Mrpl28
Naglu
Enpp3
Upk3bl
Fam166b
Dppa5a
Rpl3
Ubxn1
Pkm
Mrpl58
Aftph
Smug1
Mdp1
Casq1
Sulf2
Pycard
Olfr1499
Sf3b2
Gal3st3
1700092M07Rik
Wdr74
Cox7a2
Med11
Bloc1s4
Psmd6
Tmem208
Lrrc29
Rtca
Dbt
1700020L24Rik
Zfp979
Epb41l4a
Dact3
Mtmr10
Fra10ac1
Eps15
Exosc6
Zscan12
Zfp600
Ppp6c
Arl8b
Poglut3
Thumpd3
Mrpl30
Mitd1
Plvap
Lefty2
Apol9b
Ifitm1
Cacng3
Sgk1
Zfp207
Atp5g2
Aacs
Champ1
Cr1l
Zscan22
Plekhb1
Camk2b
Psmd7
Clk4
BC049762
Pcbp2
Snrnp27
Fmnl3
Napg
Plekhm3
Naxe
Pld3
2310022A10Rik
Scn5a
Gm15517
Dhrs7b
H3c11
H2bc22
H2ac22
Slc2a1
Atp5g3
Anapc10
Abce1
Vdac1
Tnpo3
Atad3a
Plekhf2
Pdss1
Srrt
Snrpd3
Gucd1
Aasdh
Dcaf10
Mta2
Psmf1
Wdr90
Zfp738
H2bc1
H2ac1
Ndufc1
Nfkbie
Mok
Gemin6
Tmem151b
Acp5
Arl14ep
Zc3h10
Rpl41
Ilf2
Caprin2
Trmt1
Nacc1
Pfdn5
Psmc2
Dnajc2
Rbsn
Ogt
Grtp1
Acsm3
Jund
Iqcn
Cirbp
Rpl38
Mrps31
Commd2
Dmtn
Tsc22d1
Pdss2
9530077C05Rik
Tle3
Anln
Tmem115
Rrp1
Rrp15
Polr1b
Bag6
Apom
R3hcc1
Utp6
Ccr7
Nufip2
Csnk1a1
Cct8
Mterf1a
Kmt2d
Clcn3
Ppip5k2
Gin1
Mrps2
1700007K13Rik
Wbp1
Ino80b
Zfp141
Ubiad1
Mtor
Dctpp1
H2bc21
H2ac21
H2ac20
Srp19
Rbm14
Gm21992
Isy1
Psmg1
2210016L21Rik
Stil
Bloc1s5
Ptpru
Exoc3l4
Cnmd
Mif
Tmed5
Ccdc18
Scfd1
Nsmce4a
Msra
Cfap298
Nob1
Dst
Usp37
Cnot9
Ipo8
Pld2
Epas1
Zcchc4
S100a14
Elf3
Cyp2w1
Nfat5
Ints6
Kat6a
Wtap
Rnf187
Haspin
Nudt15
Zbtb17
Arpc3
Zfp660
Myg1
Srarp
Serpina3i
Qrfpr
Uspl1
Ppp4r3b
Sytl3
Zfp827
Mkrn2
Stk11
Vps33a
Ttll3
Tor4a
Samd5
Krtap5-5
H3c2
Cox18
Rfx7
Rfesd
Pex12
Ap2b1
Fbxo46
Bhmg1
Them6
Aym1
Luc7l
Zfp821
Ist1
Pnisr
Specc1
Asah1
Ints7
Dtl
Ddost
Polq
Slc39a6
Elp2
Gna13
Hif3a
Cox8b
Cabp7
Atg16l2
Adra2b
Hspa4
Fem1b
Rbl2
Cluh
Ikzf5
Acadsb
Map2k7
Klhdc8b
Ccdc71
Otud7b
Mettl3
Pml
Zfp280b
Commd4
Ruvbl1
Aurkc
Atp6v0c
5730455P16Rik
Amdhd2
Plcd3
Acbd4
Tefm
Nvl
Ypel5
Hif1an
Zcchc3
6820408C15Rik
Pold3
Ptpa
Crat
Rps2
Rnf151
Ndufb10
Pemt
Slc35b2
Ptpn23
Carhsp1
Atp6v0a1
Oscar
Ndufa3
Ppp1r8
Phc1
Tmem132a
Slc22a14
Inhbe
Arhgap27
Ablim2
Asmt
Pigq
Nhlrc4
Ankrd40
Pgghg
Cnst
Gaa
Ptcd1
Cpsf4
Pstk
Tfb2m
Sh2b1
Sumf2
Ptprj
Calm1
Dido1
Impdh2
Gid8
Btbd8
Cpped1
Parp2
Atn1
Ndufa5
Asb15
Emp2
Tmprss9
Ralgapb
Hvcn1
H1f5
Zfand5
Nabp1
Mcl1
Phf12
Med17
Tnfrsf12a
Thoc6
Hcfc1r1
Dcps
Dynlt1b
Vamp4
Mib2
Mob3c
Espl1
Irf9
Hoxd3
Ctc1
Etfbkmt
Tulp1
Tmed4
Gpr141
Bcl9l
Stat3
Pnp
Gspt1
Gtf3c3
Timm44
C1qbp
Pds5b
Dbnl
Tma16
Slc43a1
Mcm5
Slc35b1
Elovl6
Wdr31
Snx17
Eif2b4
Gtf2b
Mrpl12
Cops8
Idh1
Cradd
Hspa14
Cdnf
Msh6
Mcoln1
Tspan32
Nufip1
Gpalpp1
Dusp13
Tpd52
Tnfrsf21
Neurod4
Kcnh1
Fstl5
Nemf
Dstn
Tab1
Cenps
Pxn
Btbd19
Orc5
Rbm4b
Spg7
Tpgs1
Vamp1
Prrg2
Nosip
Appl2
Tfdp2
Zdhhc19
Ptger1
Fgf4
Adora3
Calm2
Rps3a1
Trmo
Mob1b
Taf5
Wdr61
Mrpl34
Dda1
Thoc5
Aar2
Abhd8
Sumf1
Dhx32
Lrp1
Stmn3
Dgka
Spata25
Zswim1
Zmynd19
Gfap
Dlx3
Tcte3
Ermard
Col1a1
Ndufs4
Fscn1
Arrdc3
Rnf123