ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3200440 | mESC derived haemogenic endothelium
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◣ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Ube2a
Cldn34d
Arntl
Tle3
Tcstv3
Cnot1
H3c6
Gpr84
Ska2
Prr11
H3c10
H2bc13
H2ac13
Ttc41
Hsp90b1
Katnb1
Gm2237
Erdr1
H2bc12
H2ac12
Sp2
H3c11
H2bc22
H2ac22
Prkaca
Kmt2a
H4c8
H3c8
H2ac10
Dolpp1
H1f2
Zfp869
Taf12
H3c15
H3c14
H2ac19
H2ac18
Cry1
Ncl
Tle6
H2bc6
H1f4
Eapp
Calr3
1700030K09Rik
Arrdc4
Ctnnb1
Tex14
Nfyc
Tomm34
Stk4
H2bc4
H2ac6
Sirt4
H4f16
H2aj
H4c6
H1f3
Arid4a
H2bc14
Rfx1
N6amt1
Ap3m2
Pknox1
Fyco1
Usp1
H3c7
H2bc9
H2bc21
H2ac21
H2ac20
Zfp963
Olfr806
H4c4
Tbccd1
Dnajb11
Mis12
Derl2
Dcaf15
H3c13
H2bc18
Kpnb1
Phb
Gm5165
Gtf3c6
Il31ra
Flad1
Far1
Srsf7
H3c2
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
H2ac4
H2bc3
H3f3b
Lima1
Cnpy3
BC107364
Jund
Iqcn
Dcaf11
H1f5
Hmgb2
Atp5b
Gtf2a1
Fbxl3
Prdx1
Abhd6
Bricd5
Pgp
Klhl24
Lats2
Ppia
Rbm39
Tsnaxip1
Ranbp10
H4c2
H4c12
H2bc15
H2ac15
H3c3
Pnrc1
Ppp2r1a
Rps19
Tnpo1
Rnf5
Agpat1
Kpna1
Gm3636
Pitpnm1
Cdk2ap2
Pradc1
Cct7
Zfp143
Rab11b
Clk1
Rnpc3
Slc39a3
Klf7
Fus
Lsm4
Zfp868
Hnrnpa1
Cbx5
Dera
Sde2
Tle1
Gm3448
Gm3417
Tcte3
Gm3435
Marchf7
Kctd9
Cdca2
Eif1
Cnot6
Slc5a5
Rpl18a
Eef1a1
H4c11
Aven
Nucks1
Hspa5
Nepro
Prxl2a
Poldip3
Zfp866
Fmnl3
Ncdn
AU040320
Top2b
Sel1l
H4bc24
H2bc23
H2ac24
H2ac23
H4c17
Ifrd1
Srrm2
Cyth2
BC005537
Ywhab
Tmem94
Pabpn1
Sprr2a2
Sprr2a1
Dnajb4
Fubp1
Spg7
Sumo3
Rps3a1
Rbm25
Zfp654
Cggbp1
Arl2bp
Tpt1
Srsf6
Khdrbs1
H4c18
Kbtbd2
Vta1
Snrpe
Ciart
Slc35g3
Polr2a
Efcab2
Hjurp
A730008H23Rik
Txnl1
Alyref2
B230219D22Rik
Cyld
Calcoco1
9430015G10Rik
Hmgn1
Gbe1
Hmgn2
Dazap2
Zfp523
Ilkap
Sdcbp
Zfp960
Trir
Get3
Zranb3
R3hdm1
Hsp90ab1
Zfp623
Nr1d2
Inka1
Ddx5
Cep95
Rhob
H2az2
H4c14
Hbp1
Sod1
Arcn1
Fam168b
Per2
Rbm6
Rita1
Ddx54
H4c3
H1f6
Setd5
Ppp3cb
Tom1
Hnrnpr
Hsp90aa1
Tef
Eri3
Eif2ak3
Mylk3
Map2k2
Ddx39a
Rps8
Srcap
Phf7
Bap1
Lsm6
Tmem107
Utp4
Derpc
Chtf8
Rft1
Nedd8
Gmpr2
Vpreb1
Top3b
Etaa1
Fdft1
Ppp1r10
Mrps18b
Snx5
Mgme1
Sharpin
Maf1
Gm35339
Mios
Armc5
9130023H24Rik
Fam76b
Cep57
Dglucy
Nsmce4a
Tti2
Zfp24
Ttf1
Uhmk1
Ints7
Dtl
Pcif1
S1pr4
Ncln
Hnrnpc
Rap2a
Cops3
Rmi1
Hnrnpk
Trdmt1
Ppp2r2a
Zfp326
Rae1
Pcgf3
Slc16a6
Arsg
Zfp422
Pole4
Ipo7
Zscan22
Vmn2r23
Tra2b
Cnbp
P4hb
Ddx39b
Kansl2
Zfp524
Fiz1
Rplp0
Tkfc
Ddb1
Cdc42
Eif4e2
Mcu
Epha7
Itgb1
Eci1
Oard1
Nfya
Smg9
Hnrnpa2b1
Cbx3
H4c9
H2bc11
H2ac11
Yeats4
Epc1
Tomm20
Cep41
Snx25
Mzt1
Bora
Anapc10
Abce1
Zdhhc17
Elmo2
Eif2ak4
Rfc1
Fbh1
Ankrd16
Smarcal1
Ythdc1
Acot9
Mier1
Bpnt2
Trmo
Srek1
Vps36
Dedd
Srsf5
Tut7
Csgalnact2
Sike1
Ubc
Pcbp1
Chmp4b
Nubp1
Ube2d3
Fam76a
Taf15
Sfxn5
Traf4
Rp9
Rpf1
Zfp428
Ercc6l2
Dgcr8
Dctd
Ptpn6
Grcc10
Polr2m
Elk4
Eif4b
Dscc1
Ermard
Puf60
Galnt11
Mdm4
Bola1
Brwd1
Zfp959
Tm2d1
Ptbp1
Kpna4
Krcc1
Secisbp2
Pnpla8
Gtf2ird2
Ankhd1
Trim27
Ywhae
Sertad2
Dzip3
Cip2a
Srd5a3
Gm3488
Rgs2
9030025P20Rik
Rheb
Chd2
Thbs3
Mtx1
Ssbp4
Bnip2
Gmeb1
Mapk1ip1l
Get4
Snrnp70
Zfp821
Ist1
Tcf25
Kdm5a
H2bc1
H2ac1
Aspscr1
Cspp1
Cops5
Tmem123
Hmgxb4
Mapk6
Fbxl4
Ets1
Ankzf1
Srsf2
Mfsd11
Zc3h6
Rock2
Luc7l2
Med15
Per1
Med7
Zfp62
Prpsap2
Qrich1
Tsc22d1
Cirbp
Fam174c
Srsf3
Atp2a2
Arrdc3
Iws1
Luzp1
Rab2a
Cbfb
Ckap2
Ivd
Syde1
Zfand6
H4c1
H3c1
H1f1
Ppp2ca
Rdm1
4930453N24Rik
Nutf2
Banp
Eif3c
Pskh1
Wwc2
Cep43
Tent4b
Rab5b
Pts
Ptdss1
Mterf3
Fam185a
Ccdc146
Rps20
Gtf2a2
Tasor
Ghitm
Efnb2
Klf11
Mettl22
Hint1
Slc4a7
Usp25
Aak1
Mxd3
Srgap2
Fam72a
Mmadhc
Eif4e
Tmem263
Fhl4
Mcl1
Rsrp1
Hnrnpa3
Dpp8
Wdhd1
Socs4
Pcyt1a
Zfp341
Mxd1
Rnaseh2b
Gmnn
Chrac1
Tle4
Tent2
Nmd3
Spag4
Nup205
Tubb4b
Arf4
Fbxw11
Cep128
Cr1l
Esp38
Poln
Haus3
Taf4
Cox20
Cat
Smim19
Slc20a2
Osbp
Nfe2
Gorasp2
Aff4
Kat6a
Rab21
Znrf1
Tnrc6a
Ppp6r2
Ppp1r15a
Plekha4
Tmem242
Pmpca
Entr1
Zkscan3
Yrdc
1110065P20Rik
Pex2
Mmaa
Clptm1l
Ubr5
Ints9
Hmbox1
Sowahc
Septin10
Hpf1
Ensa
Smim10l1
Zfp655
Tmem183a
Cox5a
Snrpd1
Gm6712
Mtus1
Trpc1
Slc12a4
Tmem88
Naa38
Cyb5d1
Arl6ip1
Thap1
Nr2c2
Zfp871
Arhgap11a
Sqstm1
Eif5
Oga
Tlk2
Strn3
Ap4s1
Pkmyt1
Mbtps2
Raly
Cdk12
Scaf1
Rras
Zfp1
Rpl17
Rnf4
Rabep1
Shroom3
Dnajb1
Ywhaz
Snw1
Rpsa
Vdac2
Dnajc10
Phf13
Zfp691
Haus4
Rsrc2
Kntc1
Gabpb2
Zc3h11a
Zbed6
Opa3
Pdcd6ip
Casc3
Tbl1xr1
Tgfbr3l
Snapc2
Itga2b
Akap10
Sephs2
Ncoa4
Dcun1d4
Dnaja1
Nup62
Il4i1b
Atf5
Clcn4
Fam204a
Topbp1
Olfr62
Zfp605
Gtpbp6
Tomm70a
Zfp628
Zranb2
Mtpap
Atf7
Nyx
Smchd1
Dusp1
Ulk2
Odc1
Psmd7
Hps5
Gtf2h1
Eif4a3
Rfesd
Cox8a
Pum1
Cfl2
Actl6a
Mtf2
Pdf
Sdhaf2
Cpsf7
Ubxn4
Atxn7
Prpf40b
Zdhhc16
Exosc1
Top2a
Ndfip2
Serinc3
Gm5741
Dhps
Shc1
Cks1b
Prdm10
Atad1
Ppm1a
Trp53inp2
H6pd
Impact
Tspyl2
Stk3
Foxk2
Ahctf1
Smarca5
Sbf2
Paip2
Oxsm
Ngly1
Wdr4
Pcm1
Usp40
Qtrt2
Ccdc191
Zfp445
Pibf1
Dis3
Pfkfb3
Ddx59
Hic2
Dync1li2
Slc35a3
Ash2l
Yy1
Gm33989
Mettl1
Eef1akmt3
Brox
Aida
Ddx3x
Atf1
Txnrd1
Tcerg1
Pcnt
Hp1bp3
Rnf44
Txndc5
Dync1li1
Tkt
Sf3a2
Plekhj1
Tex261
Bmpr1a
Ticrr
Cd300lb
Luc7l
Krr1
Bola3
Ralgds
Rnf38
Ung
Sun1
Gemin4
Dbil5
Alkbh2
Ubb
H3f3a
Hnrnpm
Ube2d2a
Sesn1
Zfp384
Rad18
Zbed3
Kmt5a
Msh6
Lyl1
Ufsp2
1700029J07Rik
Zfp882
Gm3411
Nfkbiz
Kmt2e
Zfp637
Dnajb12
Rpl13
Rnf111
Sugp1
Mau2
Brd4
Irf2bpl
Vamp3
Wdr78
Epb41
Swsap1
Larp4
Ddx17
Rpl36
Micos13
Kpna2
Eif5a
Hagh
Fahd1
Rhbdd2
Atg14
Cic
Dpysl2
Tdrkh
Mon1b
Znfx1
Nudt13
Urgcp
Slc39a10
Pigl
Ncor1
Trpc4ap
Gm5617
Zzz3
Eif3e
Hsd17b12
Usp35
Kctd21
Cisd2
Zfp433
Gm32687
Mageb3
Ctdspl2
Psmd4
Selenof
Hs2st1
Spata17
Gpatch2
Fnbp1l
Evi5l
Elk1
Mat2a
Txnip
Tiparp
Hnrnpab
Mphosph9
2810006K23Rik
Exoc5
Ap5m1
Sfr1
1810058I24Rik
Fkbp3
Fancm
Pdcd4
Psma3
Pih1d2
Nkapd1
Exosc10
E2f8
Hnrnph1
Gsto1
Rfx3
Tmem248
Eea1
Mcat
Rps15a
2310033P09Rik
Mrps9
Gm10033
Txn1
Gmfb
Ankrd17
Csde1
Psmd12
Psmd3
Pak2
Kansl1
Sav1
Ebag9
Rbfox2
Cnih1
Rhog
Bptf
Snrnp35
Stil
Chmp3
H2ax
Eif4a1
Rpl10a
Frmd6
Klf9
M6pr
Mapkapk5
Zfp809
Rps24
Polr3a
Kbtbd7
Cyrib
Fam13b
Ccdc50
Patz1
Ing3
Zfp553
Vrk2
Hyls1
Ccdc88a
Ppp2r3a
Marchf5
Cpeb3
Lims1
Tax1bp1
Etf1
Usp34
Ythdf3
Ino80
Sp4
Erbin
Tcta
Rhoa
Vcp
Caap1
Nop58
Rrnad1
Isg20l2
Cyfip1
Asf1b
Mcpt8
Litaf
St3gal2
Pafah1b2
Sphk2
Rpl18
Fam83e
Rpl8
Commd5
Map1lc3a
Ranbp9
Nasp
Ctcf
Fignl1
Stt3b
Dusp4
Nlk
Dock8
Dnajb5
Kat7
Il6st
Mos
Nedd4
Ccm2
Fnip1
Septin7
Serpini1
Pdcd10
Sumo2
Zfp592
Capn7
Paip1
Vti1b
Spcs3
Ckap5
Nfe2l2
Adrm1
Haus1
Atp5a1
Tatdn3
Nsl1
Ncoa5
Raver1
Xpo1
Usp22
Ddhd1
Slc29a2
Pwwp2b
Spin1
Rps6
Anapc5
Mob4
Gsk3a
Fam133b
Orc5
Msantd2
Rmdn1
Slc30a9
Btbd9
Abhd2
Son
Gm36712
Gart
Rabgef1
Ep300
Zdhhc20
Ints12
Gstcd
Lmbr1l
H2az1
Dnajb14
Csnk1d
Rasa2
F2r
Zcchc9
Stam
Vmn2r102
Hmox1
Ufl1
Galk2
Atg10
Wtap
Ubxn6
Hdgfl2
Adss
Frg1
Fem1c
Maml1
Mphosph6
Zfp639
Nbeal1
Desi2
Sec24b
E2f3
Eno1
Gclm
Sema4d
Atp8b3
Calm1
Nufip2
Eif3a
Glul
Adpgk
Rpl22l1
Srxn1
Phykpl
Vps37a
Cnot7
Prpf38b
Rps7
Pum2
Snrpb
Bcl6
Rhbdd3
Ewsr1
Nr4a3
Als2
Ttc13
Arv1
Sart1
Zfp771
Tmem218
Zfp992
Slc38a2
Ppp1r2