ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9144816 | 3T3-L1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◣ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

H4f16
H2aj
H4c3
H1f6
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
H4c14
Cxcl1
H2bc6
H4c4
H3c15
H3c14
H2ac19
H2ac18
H1f2
H4c17
H1f4
Cwc22
Slc35e3
Slc35g3
Polr2a
H3f3b
H2bc12
H4c9
H2bc11
H2ac11
H4c8
H3c8
H2ac10
Mt1
Fth1
Tex14
H3c11
H2bc22
H2ac22
H1f5
H3c13
H2bc18
Eif1
Mdm2
Cxcl5
Adamts1
Tsc22d1
Ftl1
Txnip
H2bc21
H2ac21
H2ac20
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Yeats4
Atf4
Mat2a
Slc38a2
Cldn34d
H4c2
H3c2
H4c1
Zfp36l1
Ubc
Actb
Ppp1r10
Mrps18b
Herpud1
Nfkbia
H4c6
H1f3
Ddx5
Cep95
Sqstm1
Gadd45a
Eef1a1
Tuba1a
Pnrc1
Ppp1r12a
Ubb
Poldip3
Ddit4
H2bc4
H2ac6
Eapp
Selenop
Hmgb2
Unk
H3c10
H2bc13
H2ac13
H2bc14
Cited2
H3c6
Vim
Zfp36l2
Gtf3c6
Hnrnpa2b1
Cbx3
Mt2
Slc39a10
Clec2d
Btg1
Sp1
Col1a2
Tti2
Nup62
Il4i1b
Atf5
H4c12
H2bc15
H2ac15
Fam43a
H2ac4
Efcab2
Junb
Ints6
Kmt5b
Chac1
Gm3448
Gm3417
Tcte3
Ermard
Tob1
Ccl2
Srsf3
Srsf6
H1f0
Gcat
Gfpt1
Serinc3
Calm2
Taf12
H4c11
Smim10l1
Zfp655
Ddx3x
Pcbp1
Ptms
Slc25a4
Sned1
Sp3
Rpl3
Ccl7
Srsf7
Cdkn1a
Slc3a2
S100a6
S100a5
Fam53c
Nsd3
Letm2
B2m
Tmsb10
Col1a1
Gem
Sirt4
Tuba1b
Zfand5
Uspl1
Itm2b
Gpx1
Taf4
Ptp4a1
Calm1
Csf1
Atp6v0c
Amdhd2
Znfx1
Irf1
Rnf103
Ier3
Flot1
Prdx1
Casd1
Ctnnb1
Insig1
Klf7
Arf6
Cebpd
Raly
Epc1
Mbd6
Ddit3
Mgst1
Pcif1
Klhl24
9530077C05Rik
Anln
Lrrc58
Trib3
Resf1
Klf6
Map1lc3b
BC005537
Sik1
Zfp1
Rhob
Amn1
Angptl4
Ulk2
Dglucy
Acadl
Jund
Iqcn
Dennd6a
Crebrf
Phlda3
Pdk4
Hmgn2
Zc3h6
Glul
Plk2
Rbm39
Fn1
Ctsl
Hsp90ab1
Hmox1
Sec62
Arl15
Nfat5
Nfe2l2
Gstp2
Gstp1
H2ac12
Poglut3
Paip2
Son
Gm36712
Gart
Cebpb
Cdc42
Ppp1r2
Tut7
Trmt10c
Hspa5
Btg2
Urgcp
Zfp963
Psap
Oser1
Mif
Srsf2
Mfsd11
Retreg2
Cnppd1
Sun2
Hexim2
Arhgap12
Snx9
Eif5
Rap1b
Notch2
Rplp0
Baz2b
Tmem140
Ptpn6
Grcc10
Pim3
Trp53inp1
Gars
Frs2
Mmp2
Napepld
Alyref2
Zfp207
Slc5a3
Mrps6
Mak16
Arrdc3
Slc43a2
Rsrp1
Gpr19
Ccni
2010109A12Rik
Fstl1
Ptpmt1
Agbl3
Sppl2a
Acyp2
Litaf
Plin2
Stag1
Ccng2
Pck2
Oga
Odc1
Pot1a
Apc
4931414P19Rik
Dpy19l4
Dnajb4
Fubp1
Eif3a
Eif3e
Tmem107
Ep300
Asah2
C3
Tmem128
Tcstv3
Ptma
H3c1
H1f1
S100a10
Adnp2
Ppia
Kctd20
Gsn
Eci1
Nde1
Marf1
Cdkn2b
Rpl5
Stat3
Rdh14
Cxcl12
Flcn
AW549877
Nup107
Gabarapl1
Mrps18a
Rmnd5a
Actg1
Matr3
Tmem209
Ssmem1
Dynll1
Plpp3
Gxylt2
Rbms1
Pole4
Morf4l1
Brox
Aida
Rgs2
Zfp236
Sugp1
Mau2
F3
Tm9sf3
Epc2
Ak3
Dynlt1b
Prdm5
Pdcd4
Asns
St7
H2ax
Hexim1
Aven
Wtap
Fbxo4
1810013L24Rik
H2aw
Mmp11
Chchd10
Timp2
Clk1
Zscan25
1810058I24Rik
Baiap2
Nsrp1
Hipk3
Luc7l2
Bach1
H2-L
H2-D1
Mknk2
Kctd5
Ahnak
Prrc2a
Trmt44
Hbp1
Samd9l
Rab43
Tm2d1
Pkn1
Ppp1ccb
Ppp1cc
Cebpg
Cct2
Rfc4
Hnrnph1
Hspa8
Thbs1
Ddx19b
Aars
Slc6a6
Rsrc2
Kntc1
Fnip1
Slc18a1
Atp6v1b2
Pyurf
Osr2
Ywhag
Rab5a
Mob1a
Zfp62
Pan3
Tbc1d5
Kmt2e
Hmgn1
Dusp10
1700056E22Rik
Mansc4
Klhl42
Fam227b
Dtwd1
Pnp
Trim35
Cltc
Piezo1
Tbrg4
Krcc1
Zfp605
Gtpbp6
Pigt
Clk4
BC049762
Rbm14
Gm21992
Atxn7l3b
Klf11
Gadd45gip1
Pigv
Arrdc2
Rpl17
Cald1
Lyplal1
Rmdn2
Sptan1
Usp53
Pcmtd1
Tnfsfm13
Tnfsf12
Pkd1
Lrp6
Uhrf2
Patj
Neurl2
Ctsa
Retsat
Elmod3
Gls
Fbxl3
Gng12
Fam122a
H2-DMa
Brd2
Usp34
Sde2
Rrn3
Polg2
Thbs3
Mtx1
Lcmt2
Adal
Col3a1
Lox
Ncoa5
Pdpk1
Mbnl1
Cul1
Arhgdia
Mos
Hspa9
Nagk
Zbtb44
Cplane1
Sppl3
Phkb
Itfg1
Cox20
Cpsf6
Serinc1
Fus
Adprh
Twf1
Tmem223
Tmem179b
Tbc1d13
Pdf
Nop2
Ifi211
Trim39
Tax1bp1
Rpl24
Emc7
Csnk1a1
Mterf1b
Bbs2
Pura
Mia2
Mtg2
Zfhx3
Wsb1
Hnrnpf
Thap1
Tceanc
Yap1
Vps36
Bdnf
Zdhhc21
Ghr
Zfp69
Zfp143
Hnrnpa1
Cbx5
Gsto1
Ddx39b
Zfp637
Atf1
Copb1
Dazap2
Zfyve1
Amacr
Arhgef7
Tbl1xr1
Chic2
Crbn
Zbtb38
Zfp868
Rps12
Parva
Mllt10
Cd63
Mdfic
Atp6v1h
Add3
Ddhd2
Kctd18
Cdkn1b
Nabp1
Zfp866
Eif4ebp1
Mrpl2
Klc4
Cul7
Dync1li2
Rab11fip2
Mkln1
Pggt1b
Ywhaz
Ndfip1
Slc7a5
Ctdsp1
Ptrhd1
Cenpo
Rufy1
Arl14ep
Atp5g3
Usp16
Seh1l
4930453N24Rik
Lrrc61
Ptn
Atp23
Spg11
Guf1
Rnh1
Ncoa3
Heatr4
Acot2
Hexa
Gpr85
Acbd5
Adam10
Smim14
Pcmtd2
Hsp90aa1
Pafah1b2
Sem1
Asap1
Tet3
Atp6v1e1
Rbm33
Zfp119a
Gng11
Gpx4
Pafah1b1
Camk2d
Lin7c
Stat6
C330018D20Rik
Hdhd2
Cdkn2a
Ing3
Nfkbiz
Zfp869
Susd6
Malsu1
Kdm3a
Tomt
Lamtor1
Kdm5b
D8Ertd738e
Adnp
Mmadhc
Slc5a6
Atraid
Kiz
Ltbr
Hhat
Itgb1
Birc2
Ube2l3
Rpl15
Nkiras1
Tbc1d10c
Ppp1ca
Ankrd12
Ccnl1
Rps20
Rab7
Irs2
Ube2d3
Phykpl
Siah1a
Cat
Pdgfrb
9030025P20Rik
Sod1
Mocs3
Dpm1
Ddx6
Gm10130
Nrbp1
Mios
Prkag1
Rchy1
Vamp8
Ccdc9b
Tmem125
Taok1
Ubxn8
Ppfibp1
Rpl39
Cul5
Zc3h15
Zfr
Plin4
Spata1
Gng5
Itfg2
Kpna2
Rmi1
Hnrnpk
Rprd2
Nptn
Usp38
Tasor
4833420G17Rik
Pum2
Setd1b
Manbal
Wwp2
Sdc4
Btaf1
Ube2v2
Sf3b4
Rpl32
Nedd4
Tubg1
Retreg3
Zfp248
Mxd4
Chchd2
Gm20346
Anp32a
Tmem106b
Nrf1
Smad1
Lamp2
Mrpl40
Hira
Tmem134
Aip
Gpd2
Insr
Pccb
Nfyc
Mmaa
Sft2d3
Tmem165
Il6ra
Ifi27
Polr2m
Trdmt1
Golga1
Mrpl53
Atxn7l2
Abcc1
Camkk2
Map2k2
Calr
Aasdh
Vps37a
Cnot7
Rbm12
Cpne1
Pank2
Ube2b
Cdkl3
Snx13
Pabpc1
Raf1
Selenot
Rnf10
Tmem39a
Strap
Fbxw11
Trmt10a
Mttp
Mrps35
Zbed3
Egf
Gpr137b
Tra2a
Gtdc1
Zfp638
Ubr2
Pet117
Kat14
Nsd1
Btbd3
Ppp1r15a
Plekha4
Tmf1
Mettl26
Scaf11
Maea
Bpnt2
Nudt3
Nsun3
Pkm
Relb
Ero1a
Zmat1
Hlcs
Ccnl2
Il6st
Ankrd37
Ppp1r3c
Kbtbd3
Aasdhppt
Fcho2
Chka
Rab22a
Gpr155
Parp11
Anapc4
Usp24
Wdr19
Slc25a24
Wnk1
Dusp11
Washc4
Ddx17
Atxn2
Sgo1
Cnot6
Id1
Eif4g2
Zc3h4
Ier5l
Hnrnpdl
Enoph1
Ghitm
Chd4
Egln2
Ahnak2
Tcp11l2
Ncl
Txn1
Ubald1
Tomm34
Stk4
Nubp1
Pih1d1
Aldh16a1
Thbs2
Zfp507
Setd7
Gm3435
Tubb4b
Cdk9
Brpf3
Haus1
Atp5a1
Gnb2
Prss23
Washc1
Slc35a3
Hnrnpa3
Kdm6b
Rnf111
Ccdc91
Lig3
Rhot2
Msl1
Obi1
Wasf2
Bmf
Zmym2
Gtf2i
Spred1
Rtkn
Sdccag8
Cep170
Ier2
Gtf2b
Zfp959
Arcn1
Eif3d
Metap1d
Prrx2
Zeb2
Rps8
Arl8b
Sox9
Pskh1
Cep295
Tnks2
Rnf146
Smo
Tigd2
Eif3c
Champ1
Patl1
Srd5a3
Galnt11
Sltm
Tmem175
Gak
Timm44
Fnta
Dync1h1
D2hgdh
Psmd5
Cutal
Uba6
Zfp326
Hdac4
Tbc1d9b
Adamts5
Ptpn2
Sars
Wdr4
Topbp1
Tmem192
Spag6
Gnb1l
Spaca6
Tpk1
Vamp5
Dnaja1
Lbh
Pten
Rab33b
Nars
Eif2s2
Nuak1
Mob1b
Kdm5a
Fam13b
Crot
C1d
Tmem17
Atp6v1g1
Plekhm3
Anxa2
Zfp874b
Gbp2
Eef2
H3f3a
Pradc1
Cct7
Rbbp6
Dguok
Micu2
Zfp319
Usb1
Washc2
Exoc3
Rsph3b
Uhmk1
Otub1
Hilpda
Lmo4
Bcl2l2
Il1rl2
Ints5
1810009A15Rik
Stk35
Gabpb1
Lbhd1
Camk1
Ifnar2
Zfp266
Nanp
Spg21
Becn1
Hnrnpab
Caprin1
Tgfbr3
Suz12
Zfp213
Sema4c
Ezh1
Slc38a7
Sgk1
Sfpq
Memo1
Kat6a
Ccdc107
Ubap2l
4933434E20Rik
Tyw1
Sbds
Snai1
Asl
Crcp
Ifi204
Polb
Scmh1
Lmna
Ddx59
Gm5617
Sfr1
Rnf6
Aldh3a2
Rb1cc1
Net1
Klhdc10
Erbin
Lyrm7
Mthfd1
Ntpcr
Tmsb4x
Gtf2a1
Cct8
Fgfr1
Ttc17
Cpt1b
Chkb
Serpinb6a
Slc25a36
Nub1
Zfp397
Ptar1
Atp5j2
Tlr3
Chrac1
Pcmt1
Lonp1
Catsperd
Cops7a
Ociad1
Vgll4
Lats1
Ctdsp2
Shisa4
Yipf4
Bhlhe41
Traf2
Tuba1c
Rdm1
Phf23
Gabarap
Ywhaq
Tor1aip2
Tor1aip1
Ccnc
Cyp1b1
Mtf2
Rfx3
Crebl2
Pomp
Bcl2l13
Rps9
Cbx4
Nras
Klhdc8b
Ccdc71
Clcf1
Il10rb
Txndc12
Btf3l4
Cyp4v3
Rab24
Prelid1
Cirbp
Fam174c
Gm13285
Gm13287
Gm13275