ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX277329 | MEL
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◣ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Tcstv3
Cldn34d
Rptor
Snx17
Eif2b4
Tbcd
Eif2b5
Brox
Aida
B9d1
Setdb1
Scrib
Aaas
Sepsecs
Chmp6
Tmed2
Ddx41
Ndufaf5
Esf1
Epg5
Atf6
Kpna1
Mtmr10
Cox6c
Olfr806
Rpl38
Gpn3
Fam216a
Mrpl44
Get1
Pold3
Armc1
Abhd6
Mapkbp1
Ndufa9
Akap3
Fitm2
Il31ra
Sass6
Cenps
Dync1i2
Zfp949
Ufl1
Ep400
Zdhhc1
Terf2
Mvk
Mmab
Opa1
Rnf7
Ndufb8
Vps72
Pip5k1a
Stk32c
Lrrc27
Tsfm
Klhl18
Kif9
Borcs7
Lamtor5
Ubxn1
Dus2
Ddx28
Timm50
Crebl2
Zfp846
Dnajc16
Casp9
Cul2
Ndufs4
Bud13
Sdad1
Gale
Maz
Kpna6
Atad5
Ift22
Rpl3
Xpc
Lsm3
Wwox
Cog7
Pop7
Rtcb
Yipf2
Timm29
Tmem205
Ccdc159
Ppp1r7
Pask
Scnm1
Lysmd1
Cdca4
Zdhhc7
Zfp933
Nuf2
Med6
Pdcd7
Pigu
Akirin2
Calcoco1
Pus1
Snrpc
Pole3
Alad
4933430I17Rik
Mrpl19
Mis18bp1
Sugp2
Armc6
Bbs5
Dhx16
Zfp668
Zfp646
Retsat
Elmod3
Wdr12
Carf
Rab5if
Rhot1
Atrn
Clptm1
Oasl1
Clcn7
Gss
Mccc1
Psmd9
Aadacl2fm1
Zc3h18
Fyco1
Rps12
Get4
H3c13
H2bc18
Cluh
Bod1l
LTO1
Rnf113a1
Ndufa1
H2bc21
H2ac21
H2ac20
Mgst3
H4f16
H2aj
Dis3l2
Ppp6c
Med17
Ndufb5
Mrpl47
Tbcb
Polr2i
Ovol3
Raver1
Erc1
Med18
Med23
Riok1
Cage1
H4c14
Mtif3
Frg1
Pex11b
Trmt1
Nacc1
Rbl2
Smarcal1
Nme1
Gatad2b
Sspn
Slc25a32
Dcaf13
Rnf123
Mst1
Eif3c
Pcmt1
Nup43
Fntb
Map2k7
Mtrex
Dhx29
Dmap1
Als2
Tars
Jund
Iqcn
Drg2
Coq5
H2bc6
H4c4
Dcp1a
Mff
Gpatch1
Blmh
Pigbos1
Pigb
H3c6
Cep63
Anapc13
Aebp2
Gtf2b
Atad3a
Gmfb
Nxpe5
Smg8
Tyw3
Cryz
Tgfbr3l
Snapc2
Vta1
Csf2ra
9930021J03Rik
Ccdc57
N4bp2l2
Hdhd3
Ier3ip1
Heatr1
Pkig
Mettl25
Ccdc59
Zfp560
Poc5
Gspt1
Stk35
Rp9
Tmem250-ps
Gorasp2
Usp39
0610030E20Rik
Ap1g1
Smarca4
Ddx42
Ccdc47
Wdr43
Rrp1
Arfgap2
Slbp
Ikzf5
Acadsb
H3c15
H3c14
H2ac19
H2ac18
Pdcd2l
Cep295
Rsrc2
Kntc1
Sde2
Alg9
Rabl6
Ndufs3
Kbtbd4
Wdr5
Lsm6
Pbk
Mtmr2
Dchs2
Ube2j2
Hdgf
Dnttip2
Oga
Nup54
Fbxw7
Acsf3
Trp53rkb
Rab33b
Dido1
Gid8
Mrpl21
Ighmbp2
H4c3
H1f6
Ppp4r3b
Ints2
Nyx
Nfat5
Nudt5
Cdc123
Mcl1
Erdr1
Chordc1
Stx8
Cfap52
Vmn2r102
Nup153
Psd
Fbxl15
Srsf7
Tarbp2
Map3k12
Taf11
Anks1
Kctd3
Zfp809
Pde6d
Cops7b
Ermp1
Palb2
Dctn5
Prcc
Lig4
Abhd13
Ccnt1
4930415O20Rik
Slc38a2
Snx5
Mgme1
Tmem248
Hps5
Gtf2h1
Stxbp4
Cox11
Ipo9
Gm3448
Gm3417
Tcte3
Ermard
Mrps35
Pyroxd1
Esr1
Tspan4
Polr2l
Cdkal1
Nelfa
Asmt
Psmg3
Tatdn3
Nsl1
Nudt13
Uevld
Coa6
Cdh12
Nbas
Zfp511
Tubgcp2
Ap1s1
Dgat1
Bnip1
BC028528
Aph1a
Ifna13
9030025P20Rik
Arl5a
Thg1l
Birc5
Epor
Mrpl30
Mitd1
Clpx
Ilf2
H2ax
Phf23
Dvl2
Trrap
Gabarap
Mrpl35
2410002F23Rik
H4c11
G3bp2
Clec2g
Ppip5k2
Gin1
Commd1
Tbl3
Calm2
Cpsf1
Usp30
Smn1
Mrpl4
Tbc1d7
Napepld
Srr
Smg6
Polr3g
Mblac2
Xrra1
Spcs2
Pik3r3
Ciart
Uspl1
5730455P16Rik
Dpy19l4
Cdc16
Siah1a
Cdk7
Mfap2
Golga4
Tti2
Birc2
Rprd2
Clcn3
2610001J05Rik
Pts
Nup133
Stx16
Wdr36
Ap4e1
Klhdc4
Mrpl1
Atg4c
Tob1
Nemf
Mrpl20
H2bc3
H3c3
Spns1
Gabpb2
Taco1
Atp9b
Actb
Eapp
Luc7l
Mapkapk5
Rita1
Ddx54
Mrps30
Gm3435
Exoc7
H3c7
H2bc9
Vps51
Tmem262
Lgals8
Rfk
Snrpd3
Gucd1
Rrp15
Mrpl2
Klc4
Cul7
Hars2
Hars
Atr
1700065D16Rik
Morf4l1
Fam149b
Ecd
B9d2
Copb1
Arhgap11a
Atp1b2
Tchp
Eefsec
Ciao2b
Arf6
Lonp1
Catsperd
Anapc5
Rlf
Ppbp
Pf4
Gsk3a
Aggf1
Hsph1
Rs1
Ddx3x
Tmub1
Fastk
Trim50
Trmt5
Slc38a6
Gtf2f2
Cct8
Atg16l1
Arnt
Rusf1
Cdc37
Nedd8
Gmpr2
Cox5a
Mtpap
Hbs1l
Slc39a1
Creb3l4
Insig1
Fmc1
Sec22b
Slc25a51
9530077C05Rik
Anln
Srp19
H2bc12
H2ac12
Mapk14
Zfp26
Ppp1r11
Wdr61
Prr14l
Slc43a1
Ankzf1
Hspa5
H4c2
H4c1
H3c1
H1f1
Marchf6
Secisbp2l
Slc39a13
Pan2
Nsa2
Gfm2
Tcp1
Mrpl18
Mtg1
Spg11
Sfxn5
Cdk11b
Ubox5
Fastkd5
E130309D02Rik
Arel1
Tecpr2
Cinp
Clasp1
Fcgr1
Stx18
Zfp426
Ndufs1
Eef1b2
Nvl
Pex19
Tex14
Sfi1
Htra2
Dqx1
Micall2
Kctd5
Ndufa10
P4ha3
Ubc
Sumo2
Aarsd1
Commd2
H3f3b
Chmp4b
Zar1l
Brca2
Eif4g2
Ube4a
Ap3s2
Gar1
Mrps31
Ddx56
Nudt14
H1f4
Zfp143
Taf13
Rbks
Babam2
Arpc2
Marchf3
Ints6
Tmed9
Mkrn2
H4c6
H1f3
Tars2
Lrriq3
Fpgt
Esyt2
Tmem39a
H4c9
H2bc11
H2ac11
Lancl2
Ptar1
Cox19
Gcgr
Tmem125
H3c2
H2ac4
Serpini1
Pdcd10
Ppm1b
H1f2
Zfp36l1
Bms1
Ppp6r3
Mllt11
Cdc42se1
Kat2b
Vps29
Rad9b
Mrps21
Atp1a1
Erlin2
Ammecr1
Mfap5
Phf20l1
Rab11a
Map3k4
Lrpprc
Cnot1
Gtf2h3
Eif2b1
Man1a2
Chmp7
Pcif1
Rpp30
Cnpy3
Zfp212
Zfp407
Trim29
Nutf2
Pan3
Ythdf1
Cgrrf1
1810010H24Rik
Gp1ba
Pdss1
Prdx1
H2bc4
H2ac6
Oxsm
Ngly1
Sacm1l
Rsbn1
Asb7
Slc35g3
Polr2a
Psmb2
Zfp692
Dus1l
Nop16
Higd2a
Pdzd8
Rsrp1
Snrpa1
Mppe1
Elp5
Ctdnep1
Erlec1
Asb3
Plek
Hnrnpa2b1
Cbx3
Sirt4
Dnajb4
Fubp1
Psmd3
Ddx5
Cep95
Asb1
Paxip1
Rnf166
Ctu2
Ttll11
Tcerg1
Txndc17
4933427D14Rik
Coa7
Vps33b
Caprin1
Rpl23
Copz1
Gtf3c3
Mcph1
Mrpl22
Gemin5
Tmem39b
Vegfa
Ppil4
Prpf3
Slc3a2
Rfx3
Khdc4
Anp32e
Nat10
Oaf
Gdf1
Ube3c
Msra
Wdr77
Atp5pb
H2-L
H2-D1
Fastkd1
Tbck
Aimp1
Espn
Klhl7
Eif2s1
Atp6v1d
Nxt2
Taf4
Trmo
Krr1
Mettl9
Ndufc2
Zfp317
Pml
Gle1
Sec13
Pogz
Cnst
Mrps17
Gtf3c6
Ndufs7
Tsg101
Vps25
Tox2
Rbm8a
Hsp90aa1
Smndc1
Mre11a
Ankrd49
Ppp1r10
Mrps18b
Dhx33
Leng8
Taf5
Mcfd2
Ddx59
Fra10ac1
Klf4
Nupr1
Sec61a1
Rps23
Pmf1
Zfp318
Bzw2
Ankmy2
Anapc10
Abce1
Ttc32
Mis12
Derl2
Ric1
Inka1
Taf9
Sephs2
Rad17
Ak6
Ranbp6
Srek1ip1
Cwc27
Trub1
Ctnna3
Atrnl1
Crlf2
Aqp9
Tmem104
Nat9
Havcr2
Polr2m
Acp2
Dcaf10
Ubxn4
Smim11
Acp6
Nadk2
Samsn1
Kansl2
Nubp1
Utp15
Ankra2
Ppan
Mrto4
Emc1
Med20
Gm20517
Bysl
AI467606
Zfyve1
Snrnp27
Rnf6
Pum2
Prmt7
Safb2
Safb
Plvap
Tmem87b
2700062C07Rik
Arhgap23
Wdr59
Pus7l
Irak4
Saraf
Ppp3cb
Gatad2a
Rps24
Polr3a
Ift172
Fndc4
Ssr2
Fdxacb1
1110032A03Rik
Ap1m2
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
Trip4
Zfp653
Fahd2a
Sdf4
B3galt6
Galk2
Cops2
Mapk1
Capza1
Brf1
Rbbp5
Gtf2h4
Vdac2
Inpp5k
Atf7
Mrpl3
Rpp25l
1110051M20Rik
Tuft1
Srsf5
9430015G10Rik
Mterf1b
Sbno2
Pi4k2a
Morn4
Dhdds
Tmem79
Smg5
Caprin2
Tmem101
Faf1
Psmg1
Tsnax
Hpcal1
2310057M21Rik
Rfc2
Fam185a
Ccdc146
Unk
Tkfc
Ddb1
Agbl5
Med27
Tut1
Oaz2
Ndufa2
Ik
Arrb2
Triap1
Gatc
Pigyl
Tmed1
Ppm1a
Prnp
Prn
Dcaf5
Arid5a
B4galt7
Maea
Eef1akmt4-ece2
Eef1akmt4
Alg3
Otud7b
Nphp1
Mtln
Haus6
Vps45
H3c11
H2bc22
H2ac22
H1f5
Zc3h10
Rpl41
Snx1
Ciao2a
Mtif2
Kif16b
Pacs2
Abhd4
Bbs9
Dad1
Pin1
Slc25a53
Agfg2
Cct4
Trdmt1
Trp53rka
Zdhhc3
Exosc7
Tfeb
Dcaf12
Atp6v0a2
Taf12
Pnrc1
Dars
Clcn4
Rabgap1
Orc5
Ttc14
Zbtb26
Sptbn4
Brms1
B4gat1
Mrpl45
Blvrb
Ctnnb1
Ing1
Dhx9
Fam122a
Mrps15
Ptges3
C330018D20Rik
Zfpl1
Cdca5
Rab5c
D2hgdh
Mrpl9
Rpf2
Lsm8
Sp1
Tomt
Lamtor1
Exoc5
Ap5m1
Nfx1
Dclre1b
Ap4b1
Casc3
Cfap298
Golga3
Ogfod3
Hexdc
Pgls
Psmc1
Eif1ax
Atg5
Hnrnph1
Hif1a
Tubb4b
Htt
Abl2
Thap4
Atg4b
Tgfbrap1
AI597479
Fam214b
Gata1
Cfap43
Vmn2r4
Atp6v1h
Atp5g2
Csde1
Tm2d1
Napg
Cops6
Yy1
Jrkl
Ccdc82
Gba
Ssty2
Mycn
Gm21242
Eif3a
Ppp1cb
Rbm17
Clptm1l
Zfp276
Vps9d1
Pptc7
Utp23
H4c8
H3c8
H2ac10
Eif5
Ncl
Knl1
Mfsd14a
H2az1
Dnajb14
Jtb
Srp54c
Srp54b
Ddx39a
Bmpr2
Ncoa4
Dnmt1
Bin2
Ppox
Ap2m1
Ints13
Fgfr1op2
Fam53a
Ubr2
Preb
Virma
Qtrt1
Fam227b
Dtwd1
Zc3h6
Ctdp1
Zfp119b
Ints5
1810009A15Rik
Chd2
Lsm12
G6pc3
Sf3b4