ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX520468 | F9
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX018669: ES cells

◢ SRX10562781: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◣ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX3301664: Forelimb

◢ SRX3301665: Forelimb

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Slc15a1
Pibf1
Dis3
Efnb3
Bcl2a1a
Tmem231
Gabarapl2
Bcl2a1b
Ccdc171
Adgra2
Tet2
Cdv3
Aqp3
Bcl2a1d
Atp11b
Mtf2
Bbs1
Zfhx2
Thtpa
Hivep3
Mcl1
Cdk15
Rhobtb1
A930033H14Rik
Mkrn1
Tmem181a
Tctn1
Ube2s
Tcstv3
Agpat5
Adcy5
Kcnk5
Xbp1
Tnfsfm13
Tnfsf12
Mdga1
Uri1
C1qbp
Asmt
Prdx6
Ints3
Notch4
Fubp3
Unc93a2
Oxnad1
Dph3
Tal2
Capns1
Rarb
Dctn6
Pmepa1
Tmem191c
Pdgfrb
Cdx1
Cidea
Enpp4
Ucp2
Golga7
Cmip
Tomm5
Hoxb13
Sntb2
Nanog
Rcor2
Cyp26a1
Cyp26c1
Abl1
Rpgrip1
Nodal
Dusp9
Septin1
Tbc1d10b
Mylpf
Dennd2c
Plekha7
Slc43a1
Stra6
Dppa2
Camk2n1
Fitm2
Rad23a
Calr
Farsa
Kat7
1700037H04Rik
Phf5a
Aco2
Elavl3
Zfp827
Znfx1
Klf2
G0s2
Hoxb4
Hoxb5
Rfc5
Bmerb1
Ifitm7
Tm2d2
Adam9
Ttk
Myrf
Pigz
Cyp11a1
Ect2
Tefm
Nectin2
Dpp4
Foxo3
Naglu
Jam2
Gpx4
Smyd2
Unc93a
Pltp
Ncor1
Pomgnt2
Grasp
Msgn1
Cic
Angptl8
Dock6
Dcaf4
Kng2
Itpk1
Wdtc1
Acsl4
Gm525
Dgke
Cphx3
Cphx2
Cphx1
Kcnj9
Snai1
Phc1
Tmem170
Mafa
Xpo1
Rarg
Rnf13
Cldn19
Oaz2
Gja1
Tmem235
Tha1
Foxp1
Jund
Iqcn
Rai1
Tnfrsf19
Plbd2
Tcp11
Cenpm
Mzt1
Bora
Cfap74
Porcn
Exosc5
Bckdha
Map7
Pml
Socs3
Kank3
Ggact
Fstl3
Coa7
Plekhb1
Creld1
Il17rc
Nfyb
Trmt1
Nacc1
Gm36210
Zfp532
Letmd1
Galnt2
Tm7sf3
Med21
Zfp553
Mtnr1a
B3gnt7
Lasp1
Extl1
Pold2
Rbks
Babam2
Fbxo44
Fbxo2
Fbxo6
Phf11d
Wsb2
Thap4
Abcc4
Arhgap27
Fndc3b
Rxfp4
Mrc2
Ptk7
Cotl1
Sgf29
Baz1b
Msh6
Ppp3cc
Uck1
Zc3h12a
Nsd1
Evi5
Kdm3b
S100g
Zdhhc18
1700067K01Rik
Misp3
Fbxw4
Ube2o
Aanat
Muc1
Ttpal
2510009E07Rik
Itga5
Hps5
Gtf2h1
Nudt4
Tle5
Mreg
Mib2
Nudt1
Mrm2
Gipc1
Ptger1
Brwd1
Ncmap
Bcar1
Kcnk4
Gpr137
Bad
Catsperz
Znrf1
Wdr59
Lag3
Tfrc
Olfml2b
Bcat2
Hsd17b14
Twsg1
Wasf2
Mis18bp1
Eif4e
Dpep1
H2al2a
Prr5
Hrob
Fads1
Dok4
Bhlha15
Sepsecs
Slc6a16
Cd37
Coro1b
Gpr152
Cabp4
Cacng6
Kdm3a
Taok3
Suds3
Stat5b
Srp14
Ksr1
Arhgap19
Abr
Prtg
Lpar5
Pick1
Mmp11
Gm867
Chchd10
Prdm14
Mok
Zfp979
Mgat3
Rab11fip2
Rwdd2b
Ltn1
Serpinf2
Tmem135
Tspan17
Eif4e1b
Ltbp3
Greb1
Zc3h3
Ptprcap
Vash1
Odf3l1
Cspg4
S1pr2
Mmp9
Ptprf
Psmc4
Fam81a
Dpf3
Klhdc8a
Ghdc
Hcrt
Ubxn2a
Atad2b
Smdt1
Ndufa6
Atg14
Mllt1
Fam71e1
Emc10
Fgr
Zfp740
Csad
Cxcr3
Lgals9
Sertad2
Cnn3
Nr6a1
Olfml2a
Bmp4
Psmb7
Sec22c
Ccdc92b
Ss18l2
Xylb
Gtpbp4
Vars
D17H6S56E-5
Ccdc113
Dnase2b
Taf13
Mroh6
Dppa5a
Pspn
Clpp
Alkbh7
Itga3
Ankle2
Ninj2
Lefty1
Spry2
Adgre5
Smpd4
Slc29a1
Mymx
Men1
Map4k2
Acp6
Thrsp
Pcsk1n
Eras
Dhx32
Zscan4f
Fgf1
Txlng
Zfp980
Gtf2h4
Vars2
Mtg2
Ptpdc1
Crybg2
Msi1
Pgbd5
Fam25c
Asap3
Prmt8
Tbc1d24
Cmtm7
Fanci
Ticrr
Spata33
Chmp1a
Aspscr1
Notum
Dnajb6
Ccdc102a
Adgrg5
Spred2
Llgl2
Cul5
Crlf2
Dennd6a
Sct
Drd4
Klhl34
Max
Zfp988
Nol6
Slc4a9
Katnal2
Zscan4c
Ankrd44
Tnnt1
Tnni3
Hspb8
Ankhd1
Tctex1d4
Plk3
Btbd19
Arf4
Ctdsp2
Ints11
Cptp
Grm2
Acot7
R3hdm2
Rnf125
Nphs1
Kirrel2
Tmed10
Clcn2
Kazn
Abcb7
Rfx2
Rab8a
Gstp2
Gstp1
Rxrg
Rbm8a
Ccdc120
Sdha
Ccdc127
Wfdc3
Dnttip1
Atg9b
Abcb8
Septin11
Camk1
Ppp1r9a
Chrna5
Ammecr1l
N4bp1
Hoxa1
Kxd1
Fkbp8
Sap30
Sub1
Twistnb
Ndufs7
Gamt
Dazap1
Gm20939
Jarid2
Slc17a7
Pth2
Gfy
Smim8
Ankrd45
Tex50
Atp6v0d1
Agrp
Bmt2
Mbd6
Ddit3
Dedd
Slc25a39
Lama3
Erv3
Tbl1xr1
Fam168a
Ago2
Ptpmt1
Boc
Ccsap
Itpka
Icam1
Btbd16
Lamc3
Trim7
Hjurp
A730008H23Rik
Khdrbs1
Zfp219
Tmem253
Pbld2
Hnrnph3
Zfp987
Ttll3
Ptprz1
Ttll10
Zyg11a
Med13l
Nupl2
Tmem125
Dag1
4921517D22Rik
Tmem116
Erp29
Rpp25
Slc39a2
Mettl17
Ttll6
Gprc5c
Serpinh1
Erc2
Cdh1
Tnrc18
Cog6
Pgd
Id3
Rps10
Nudt3
Cox7a2l
Cpt1a
Mmp14
Bcl11b
Daxx
Smim40
Psma6
Mllt6
Dhx35
Rab39
Dnaaf3
Rbm14
Gm21992
Caln1
Atg2a
Ppp2r5b
U2surp
Pif1
A930007A09Rik
Hspbp1
Brsk1
H2-Bl
Mpc1
Rap1gap2
Irf2bpl
Fam170b
Traf3ip2
Vps37d
Dnajc30
Bud23
Slc35f2
Otop2
Ush1g
Otop3
Def6
Doc2b
Poc1b
Galnt4
Gm18905
Arhgef26
Nek2
Tlcd1
Rpl23a
Nek8
Traf4
Lipe
Sall2
Marcks
Hagh
Fahd1
Ggnbp1
Bak1
Olfr157
Irf5
Lsm1
Bag4
Gca
H4c11
H2bc14
Plekhf2
Agtpbp1
Rplp2
Slc25a22
Pidd1
Zfp930
Slc9a5
Fhod1
Txndc11
H2-M5
Ubxn8
Frmd4a
Zfp57
Gsr
Ppp2r5e
Slc35g1
Dnmt3a
Zfp280b
Ddc
Ric8b
D230025D16Rik
Cox7a1
Scube2
Icosl
Fbln1
Nkx6-3
Slc12a7
Fez2
Cdh3
Psmd7
Taf6l
Kcnh2
Uqcr11
Mbd3
Zfp600
Gabbr1
Yars
S100pbp
Pyroxd1
Tpst1
Gipc2
Ttc39b
Ifngr1
Sptan1
Sirt3
Psmd13
Zfp534
Brox
Aida
Srrm3
Cspg5
Tbc1d2
Slc25a40
Dbf4
Fn1
Mdk
Abcc5
Rsc1a1
Slc2a9
Tgm1
Il3ra
Strada
Smim38
Apobec2
Mical1
Ttc25
Rap1gap
Ank1
Cst3
Zfyve28
Cfap99
Agmat
Npvf
Bcl2l11
Tspan9
Plcd1
Ccar1
Wdr6
Mrpl37
Cyb5rl
Mdm4
Islr2
Olfr855
Olfr854
Megf11
Col4a2
Col4a1
Ass1
Crmp1
Arhgef10
Zmiz1
Foxn4
Lpcat1
Rnf169
Eif4ebp1
Spag9
Rusc2
Prss38
Tapt1
Ppdpf
Commd2
Ms4a14
Yipf5
Ubr7
Gon7
Gm20604
Zbtb34
Cfl2
Slc12a4
Dpep3
Eif2b3
Vsx2
Gpm6b
Ttyh3
Itch
Slc27a3
Blmh
Tmem205
Rab3d
Ccdc159
Ldb1
Pprc1
Kifc3
Ccr4
Dok2
Sertad1
Prx
H2bl1
Rnf19b
Satb1
Eif4h
Cfap20dc
Ier2
Rcbtb1
Cdk1
Sugt1
Slc16a2
Rab5c
Zfp839
Gatad2a
Mmgt2
Lrrc75a
Lrrc4b
Srgn
Ankrd28
Tbc1d22a
Gnai2
Smndc1
Crtap
Tmppe
Srrm1
Atp2a2
Vmn2r85
Zfp809
Rps6ka1
Rfwd3
Gfod1
Dpp9
Kdelr3
Aven
Maats1
Cox17
Cpsf4l
Coq8b
Cdc42bpb
Armc12
Rpe
Babam1
Ushbp1
Midn
Atp5d
Cbarp
Nr2f6
Rusc1
Hoxa5
Hoxa4
Mfsd14a
Slx1b
Bola2
Coro1a
Tead4
Dop1b
Rai14
Rreb1
Tet1
S100a16
Rpl11
Slc26a2
Pde6a
Slc22a21
Fbxo8
Cep44
Sipa1
Zic5
Zic2
Acot11
Sgk1
Dusp5
C130073F10Rik
Agtrap
Rnd3
Tmco2
Tmem39a
Oas2
C77080
Setd4
Cbr1
Itgb7
Sigirr
Gpr179
Zfp985
2410137M14Rik
Znrd1as
Gpr180
Tgds
Lctl
Anxa11
Slc7a7
Rex2
B230307C23Rik
Flrt1
Stra8
Slc4a7
Wdr91
Fxr1
Trim17
H3f4
Ptgir
Kpna1
Wdr25
Wars
Nhlh2
Mybl2
Dhcr24
Dcaf12
Scyl1
Gm7429
Acmsd
Dab2ip
Ttll13
Steap3
Ttc7b
Zfr
Vsig10
Spdef
Zfp33b
1810010H24Rik
Pecam1
Rbbp5
Mef2b
Ubc
Ttc39c
Plch1
Rgs11
Pdia2
Arhgdig
Smc3
Fam32a
Cib3
St6galnac6
Ercc4
Pycr2
Lefty2
Wwox
Acacb
Grtp1
Lyrm1
Dcun1d3
Slc25a38
Tnk2
Megf8
Tmem145
Trim63
Nemf
Arf6
Slc39a14
Efhb
Taar1
Fgd1
Tmem184b
Cldn34d
C2cd5
Smagp
Isg15
Agrn
Rpl17
BC031181
Pdk1
Mettl26
Wfikkn1
Dym
Sox21
Marchf3
Twf2
Tfcp2l1
Eif2ak2
Rnf165
Rest
Chd9
Dctn2
8030462N17Rik
Vmn1r225
Cndp2
Cobl
Pbx2
Gpsm3
Asah1
BC028528
Ciart
Aph1a
Prr14
Myo10
Myl9
Ehd2
Olfr806
Ppp1r14b
LOC114841036
Fkbp2
Ppp2r2d
Gpatch3
Plcb3
Pot1a
Rfc2
Ablim2
Guf1
Olfr915
Masp2
Srm
Col6a6
Aurkc
Epop
Fam178b
Cox5b
Mettl16
Abhd11
Racgap1
Best3
Ooep
Rcc1
Resf1
Hbegf
Hectd1
Akirin2
Gtf3a
Zfpm1
Angel2
Rps6kc1
Gadd45b
H2ap
H2al3
Enc1
Bcl2a1c
4921528I07Rik
Sp8
Edem2
Epp13
Abcf3
Rita1
Ddx54
Phactr3
Il17c
Yap1
Faiml
Cep70
Smtnl2
E030030I06Rik
G3bp1
Atox1
Ppcdc
Slc25a51
Oscar
Ndufa3
Gm9595
Etnk2
Zcchc10
Ide
Mapkapk5
Lims1
Rnf5
Agpat1
Otud5
Plpp2
Mta3
Kank2
Cacnb3
Vmn1r1
Pcmtd1
Nr0b1
Slc25a36
Mrpl40
Hira
St3gal3
Ubap1
Rmnd5b
Zfp870
Fem1a
Ticam1
Cdc42ep3
Gm20346
Anp32a
Zswim8
Chchd1
Agpat2
Fut11
Stard6
4930503L19Rik
Pik3ip1
Spata25
Neurl2
Ctsa
Zswim1
Hmgxb4
Tom1
Melk
Sgms2
Ccdc160
Mobp
Ncapd2
Mrpl51
Rara
Aldoart2
Tdh
Mmp20
Txnip
Tyrobp
Lman1
Fam120a
Vav3
Capn3
Spty2d1
Tigar
Nfic
H2-Q8
H2-Q6
Ap1s1
Smyd4
Rpa1
Kat6b
Arhgap35
Ercc6