ChIP-Atlas: Target genes

Potential target genes for Zic3

Query protein: Zic3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX12142046 | mESCs, differentiated
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Zic3's Target genes

◢ Zic3: Average

◢ SRX147572: ES cells

◢ SRX6879008: ES cells

◢ SRX7546911: ES cells

◢ SRX7546912: ES cells

◢ SRX7546913: ES cells

◢ SRX7546914: ES cells

◢ SRX823607: ES cells

◣ SRX12142046: mESCs, differentiated

◢ SRX12142051: mESCs, differentiated

◢ SRX12142055: mESCs, differentiated

◢ SRX15057955: mESCs, differentiated

◢ SRX15057958: mESCs, differentiated

◢ SRX15057960: mESCs, differentiated

◢ SRX9896071: mESCs, differentiated

◢ Zic3: STRING

Alg14
Fgf5
Cldn34d
Gatad2a
Timp4
Cd38
Gm4861
Eno1
Atrn
Slc25a4
Snrnp70
Zfp964
Smc6
Gen1
Pabpc1
Cul5
Wrap53
Trp53
Enpp4
Ufsp1
Letmd1
Pitx3
Gbf1
Mkx
Lypla1
Colec12
Mpi
Man2a2
Irgm1
Ywhae
Tbc1d5
Gata4
Zcrb1
Pphln1
Zfp410
Donson
Pmaip1
Abl1
Gid4
Prelid3a
Znrf1
Mycn
Slc7a7
Wipi2
Apc
Pacsin2
Ints9
Hmbox1
Pou5f1
Itm2b
Grb2
Rbm47
Coro2a
Tmed7
Eif1a
Rnf220
Chd1
Notch2
Cep70
Plcxd1
Mup4
Spata24
Acp5
Fbxl7
Pxdc1
Qpct
Ptprz1
Prdm4
Faim
Polg2
Zfp980
Slc37a3
Rab19
Pdcd2
Lama1
Lrrn4
Zfp937
Fbxo5
Tmem121
Tagln3
Irgm2
Dpp10
Nkiras2
Dnajc7
Olfr1028
Wsb2
Trabd
E030030I06Rik
H1f2
Zfp600
Gja1
Tal2
Tmem181a
Zfp9
Setd5
Rps6ka3
Efemp1
Coq2
Slc6a16
Cd37
Slc12a4
Ubtf
Arfgef1
Cfap300
Pdia3
Catsper2
H2-DMa
Brd2
Apbb2
Asxl1
Sema6a
Mrpl23
Abl2
Rnf114
Emb
Ddx20
Usp13
Ralb
Sfxn2
Arl3
Zfp979
Adnp2
Golm2
Mab21l1
Mbp
Ms4a10
Zfp267
Zdhhc6
Vti1a
Klf5
Nsrp1
Msc
Tsga10
Coil
Flywch1
Ifitm7
Bmerb1
Zfp978
Zfp991
Mterf1b
Rtl8c
Ppp2ca
Epha1
Ddah2
Wdr59
Lefty1
H3c13
H2bc18
Ephx2
Mterf1a
Zfp981
Exoc6b
Zfp442
Trim62
Dnaaf3
Atxn3
Sbk1
Itpkc
Coq8b
Ptpra
Reep2
Tmco4
Kif5c
Mbd3
Mios
B3gnt7
Nudt1
Ctxn2
Sptb
G2e3
Setd1b
Mea1
Klhdc3
Esrrg
Trim33
Dmtn
Hoxa2
Sp5
Ncs1
App
Ncor2
Rnf125
Asah2
Naa16
Tmem161a
Ccno
Slc25a17
Gdpgp1
Cib1
Klhl1
Arl2
Nbea
Mapre2
Ror1
Hnrnpll
Glul
Zbtb25
Zbtb1
Tmem62
Brms1l
Strn3
Ap4s1
Ndrg1
Rnf8
Prkag1
Ednrb
Sh3rf1
Marchf7
3300002I08Rik
2300009A05Rik
Zfp36
Smad7
Hoxb13
Zbtb22
Tapbp
Mmp25
Garre1
Rmi1
Hnrnpk
Kcnn2
Arid3c
Kcnab3
Trappc1
Cntrob
Lsmem2
Cox5a
Hmga1b
Hmga1
Tmc7
Vezt
Fgd6
Hif3a
Osbp2
Gjc1
Soga3
Neil1
Zfp868
Mpped2
Pou2f1
Trh
Rmnd5b
Arap2
Flrt2
Pald1
Klhdc8b
Ccdc71
Slc16a9
Ccdc60
H3c15
H3c14
H2ac19
H2ac18
Espn
Myo10
Usp32
Arhgap32
P3h1
AU022252
Hook2
Pgrmc2
Mnx1
Mapk4
Mdm4
Slco5a1
Tbc1d9
Chrac1
P3h2
Phlpp2
Scd1
Mapk3
Pde3a
Phc2
Prickle1
Prmt9
Ccdc30
B3gnt4
Ifitm1
Nat8f5
Nrf1
Olfr813
Tdrd3
Pef1
Kdm2b
Ncdn
AU040320
Fam227b
Dtwd1
Abr
Cerkl
Marcks
Ptch2
Tmem63b
Mrpl14
Olfr1034
Apoe
Ppp3cb
Pvr
Mllt6
Msh6
Usp37
Cnot9
Lrrc8d
Slc35f2
Ptdss2
Zfp64
Pdxdc1
Mpv17l
Asap2
Hivep2
Slc19a3
Rpp14
Htd2
Fads1
Sh2d5
H3f3a
Smad4
Lrrn2
Rif1
Tmem59l
Crlf1
Slc26a8
Mapk14
Cdhr1
Tanc1
Pramel13
Spint1
Zfp976
H2az2
Wdr61
Meaf6
Tmem42
Tprn
Timm44
Exd2
T2
Rgs12
Frzb
Mt1
Rtl8b
Casc3
Rev3l
Lama5
Pelp1
Vrtn
Jakmip1
Pms1
Ormdl1
Fahd2a
Slain2
Slc12a2
Terf2
Gpsm2
Crocc
Smarca1
Bcl7b
Npm3
Fgf8
Krba1
Fam214a
Stc2
Inha
Obsl1
Sclt1
D3Ertd751e
Smim5
Bcl10
Rtn4rl1
Dph1
Syne1
Ssh1
Duxbl3
Duxbl2
Duxbl1
Galnt12
Dcaf11
Poll
Dpcd
Kctd6
Pnrc1
Pcif1
Ptpn14
Fam50b
Snn
Ipo8
Usp36
Zfp62
Vrk1
Pcgf6
Fstl1
Tmeff1
Mreg
Tbc1d10b
Mylpf
Spg20
Asap1
Pum1
Fnta
Epb41l1
Rheb
Trappc5
Fcor
Usp44
Ghitm
Epp13
Gngt2
Abi3
Ncoa1
Ago3
Tab1
Aktip
Znhit2
Mrpl49
Fau
Axl
Smarcd1
Ppp2r5b
Chgb
Hsdl1
Dnaaf1
Mllt1
Cpsf4l
Nkx2-5
Cacng7
Trim72
Chid1
Ndufaf4
Zbtb7b
Zfp341
Tha1
Proser2
Iars2
Bpnt1
Tfeb
Rps6ka5
Utp15
Ankra2
Tmem178
Cachd1
Slc25a22
Ptk7
Adam22
Rtkn
Dlc1
Abca8b
Ppat
Paics
4930474N05Rik
Scaf11
Zkscan5
Zkscan14
Mboat1
Tulp4
Yju2
Ebi3
B3gnt2
Stx11
Stk32a
Hs3st5
Slc9a3
Mthfd2l
Kif13b
Serpinf2
Dspp
Dhx32
Rab4a
Hdac1
Mrps15
Sec22c
Kctd9
Cdca2
Cacng2
Ttc21b
Tcf7l2
Gcn1
Mapk8
Cep63
Anapc13
BC048679
Ap3b2
Hectd1
Mzt1
Car14
Tmem131l
B4galt2
Atp6v0b
Rbm45
Zfp787
Il1rapl1
Dynll2
Trmt1
Nacc1
Fam118a
Foxa2
Tle4
Cyp51
Hcfc2
Ccn2
Cpt1a
Serp1
Eif2a
Hnrnpa2b1
Cbx3
Pcbp1
Nphp3
Shoc2
Bbip1
Phf10
Cep112
Tsc22d4
Nyap1
2610528J11Rik
Capg
Krt17
Set
Pdrg1
Sphkap
2210016F16Rik
Usp10
Ugp2
Il17d
Dnajc10
Prex1
Cyp4x1
Ubtd1
Mms19
Mcf2l
Ptdss1
Mterf3
Numa1
Prss30
Fgf6
Tpd52
Tpm1
Cdkl2
Tor4a
Kctd12
Trip12
Fbxo36
Brinp1
Ptprg
Epn3
Wnt3
Lrrc8b
Rsph4a
Pitpnm1
Cdk2ap2
Gdap1l1
Lzts2
Gli2
C1ql1
Defb46
Cnn3
Macroh2a2
Rest
Pum3
Ust
Ropn1l
Olfr829
Tgfbr3
Serpini1
Pdcd10
Parp6
Shc1
Cks1b
Bcl6
Adgra2
Ap2m1
Slc14a1
Radil
Camk1d
Ttc9b
H6pd
Gimap3
Cdkn2aip
Yars2
Csnk2a1
Enpp3
Klc3
AB010352
Baz1b
Chrna9
Tchh
Actn1
Prkar1a
Tef
Psd3
Prmt8
Dmap1
Exosc6
Gapvd1
Ghr
Zyg11a
Ltb4r2
Ltb4r1
Cideb
Txndc12
Btf3l4
Sema4d
Trim25
Ksr2
BC107364
Arhgap29
Adamts6
Rragc
Mmp15
R3hdm2
Pdp2
Cd24a
Il17rd
Malt1
Phf20
Coa4
Olfr212
Shroom3
Slc35d1
Cnbp
Utp14b
Acsl3
Cyp27a1
Slc5a6
Atraid
D5Ertd579e
Socs2
Zfp286
Stmn1
Mad2l2
Draxin
Clasp2
5730409E04Rik
Gsx1
Spink2
Rprd2
Eif4e
Slc4a2
Cdk5
6820408C15Rik
Zcchc3
Pcdh8
Ost4
Pcbp2
Mtfp1
Tbl1xr1
Psd
Fbxl15
Rragd
Tmem229a
Tmem121b
Ube2d1
Cep55
Sugt1
Psmb10
Ctrl
Nkx3-2
Cand2
Col5a1
C2cd2
Cfhr3
Plk3
Retreg1
Tmem198
Chpf
Mafg
Suz12
Tbc1d4
Smarcd3
Utp23
Neil2
Tdgf1
Lrrc2
Sec22b
Jund
Iqcn
Cdh1
Trim68
Xpo6
Adnp
Pnkd
Shox2
Rsrc1
Faap20
Aamp
Csrp2
Clcn4
Chst15
Hapln4
P4hb
Mael
Cnot2
Nectin2
Vti1b
Ubr5
Map1lc3a
Tgfbr1
Tmem123
Rtcb
Tatdn3
Nsl1
Atad2b
Steap3
H2-T-ps
Pdpr
Pkm
Loxl3
Dok1
Hoxc13
Hinfp
Nfatc3
Epm2a
Speg
Srd5a3
Dab1
Tvp23a
Setdb2
Gm45935
Cab39l
L3mbtl2
Dennd1a
Dhrs7b
Gtf2a2
Pygo2
Fbp1
Nmnat3
Tcirg1
Trim7
Pik3r3
Dmkn
Cltc
Nefh
Ap1b1
Mapkapk5
Rnaset2b
Rnaset2a
Snx17
Eif2b4
Klhl34
Ppp6r1
Slc23a1
Moxd1
Lgmn
Gtf3c4
Smtn
Sowahc
Septin10
Pdpn
Rock2
Ypel2
Ccdc9
BC031181
Clasp1
Togaram1
Klhl28
Dctn4
Casq2
Ccdc177
Pdgfra
Dpf1
Zdhhc2
AI413582
Rbpjl
Matn4
Tymp
Sco2
Dus2
Ddx28
Clip4
Dsn1
Shprh
Fbrsl1
Nup85
Tafa3
Ppm1j
Gabrb3
Rab13
Slc31a1
Fkbp15
Zkscan6
Nt5c3
Bag3
Mettl14
Spag4
P2ry1
Cd300lg
Cand1
2510009E07Rik
Fam241b
Yod1
Pfkfb2
Htr2a
Adgrb3
Fam136a
Dennd2c
Rab37
Map3k20
Setx
Skil
Plcb4
Tfg
Slc19a1
Olfr1229
Arhgap42
Napepld
Ankle2
Tpst2
Gch1
Hsd11b2
Pacsin3
Snca
Ttc14
Syde2
Ptpn3
Slc13a2
Rbm24
Cga
Mtarc1
Ido1
Spry2
Glra1
Mob1a
Ginm1
Phc1
Cdh11
Slc46a3
Itga1
Entpd4b
Entpd4
Gls2
Slc4a5
Klhl13
Fgf4
Eif4g2
Got2
Snx15
Hr
Cpxm1
Wdfy3
Atrnl1
Prlr
Aoc3
Mei4
Atg5
Ift140
Cramp1l
Kcnj4
Pbk
Ctf1
Bcl7c
Sbno2
Aff4
Cfap97
H2bc6
H1f4
Tiparp
Plekhh1
Fn1
Gja4
Asb1
Lypd6b
Wscd2
Lpar2
Stra6l
Vmn1r212
Ptch1
Gm10318
Vwa8
Btla
Vdac3
Rtn2
Ppm1n
Mturn
Appl2
Pld6
Il18
Bco2
Cd47
Igf2bp3
Tmem189
Slc39a8
B4galt7
Rimbp3
9930012K11Rik
Wwtr1
Arhgap24
Prkab2
Jade3
Fam102a
B230219D22Rik
Layn
St6galnac2
Pdzd2
Csk
Mycl
Ppp2r3a
Gne
Ackr3
Plaat3
Slc17a5
Cfap20dc
Lsm14b
Cx3cl1
Mnt
Vsx1
Tfpi
Ncoa2
Vgll3
Atp1a2
Kcnq3
Trerf1
Ece1
Zyg11b
Cds2
Agfg1
Prnp
Prn
Ptpdc1
Gm9639
Gm19668
Kazn
Stard6
4930503L19Rik
Eml6
Tfap2c
Zfp996
Rcsd1
Magi3
Phf12
Zhx1
Rex2
Castor1
Lag3
Zfp319
Usb1
Npc1
C1ql3
Utp18
Mbtd1
Smarce1
Glipr1l3
Caps2
Pdik1l
Cspp1
Cops5
Kat7
Sqstm1
Polr2h
A630095N17Rik
Parp8
Prom1
Rrbp1
Samd4
Pcdhgb6
Pcdhga10
Camk2n1
Srsf2
Mfsd11
Gpr108
Ltc4s
Trip10
Sf3b3
Cog4
Ndufa6
Wsb1
Slc40a1
Borcs5
Lurap1l
Unc5b
Slc25a47
Dpf3
Slc27a2
Ncoa7
Pde5a
AI661453
1700001C19Rik
Zfp35
Ypel1
Cltb
Acta1
Trmt61a
Dll4
Gm17660
Gm3285
Col26a1
Sh3gl3
Camta2
Rps10
Vps37d
Xbp1
Mast4
Gna13
Tox
Fbxo10
Ank
Nid2
Cit
Kcnip4
Slc10a7
Rbmxl1
Dnmt3a
Prr19
Tmem145
Cdh3