ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX1550528 | Macrophages
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◣ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Cldn34d
Kpna1
Olfr806
Abhd6
Cdh12
Il31ra
Wwox
Tmem267
Tmem125
Dchs2
Oasl1
Csf2ra
Vmn2r4
Cbr3
Muc3
Lypd11
Eef2
Dapk3
Ankar
Sspn
Slc35g3
Polr2a
H3c15
H3c14
H2ac19
H2ac18
H4f16
H2aj
Tex14
H4bc24
H2bc23
H2ac24
H2ac23
H4c3
H1f6
H3f3b
H4c18
H4c14
H2bc6
Cxcl1
Eif1
Cwc22
Errfi1
Actb
Ddx5
Cep95
Atf4
H4c4
Mt1
Ubc
H1f2
Jund
Iqcn
Mat2a
Fth1
H3c6
Actg1
Klf7
Eef1a1
H3c11
H2bc22
H2ac22
Hnrnpa2b1
Cbx3
Junb
Eapp
Ube2a
Eif4a2
H1f4
H1f5
H3c13
H2bc18
Ppp1r10
Mrps18b
Tob1
H2bc12
Fyco1
Ier3
Flot1
H4c17
Arf6
Hspa5
Mt2
Hspa8
Rpl3
Zfand5
Btg1
Nfkbia
Ifna13
Tsc22d1
Nemf
Dusp1
Egr1
H4c8
H3c8
H2ac10
Taf12
Ubb
Ppia
Slc35e3
Zfp143
Gm3448
Gm3417
Ctnnb1
Nabp1
Vim
Poldip3
H4c9
H2bc11
H2ac11
Mcl1
Ier2
Pgk1
Id3
H2bc21
H2ac21
H2ac20
Ftl1
Fam53c
Raly
Mdm2
H4c2
Gtf3c6
Ddit4
Nr4a1
Cited2
H3c2
Sp1
Fam227b
Dtwd1
Ifrd1
Srsf2
Mfsd11
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Adamts1
Zyx
Calm1
Chac1
Thbs1
Vcl
Dusp5
H3c10
Zfp36l1
Fus
Cdkn1a
Slc38a2
Rplp0
Sdc4
Cebpd
H2bc13
H2ac13
H4c6
H1f3
Sqstm1
H2ac4
Tcte3
Sirt4
Ermard
Herpud1
Cebpb
Nfkbiz
Cirbp
Btg2
Fos
Cltc
Pnrc1
Aadacl2fm1
Id1
Tpt1
Unk
BC005537
Ppp1r12a
Rps29
Lima1
Ccnl1
Prdx1
Ccn1
H2bc14
Txnip
H4c1
Zfp36l2
Clcn4
Znfx1
Pcif1
Scrib
Ulk2
Tuba1c
Clec2d
Calcoco1
Yeats4
Dnajb4
Srsf5
Fam174c
Odc1
Ptp4a1
Efcab2
Plk2
Tuba1a
Tmem107
Sgk1
Sik1
Rbm39
Nfat5
Tpm1
H2ax
Srsf6
Rgs2
H2-DMa
Brd2
Dnaja1
Srsf3
Palld
Litaf
H2bc4
H2ac6
Pcbp1
Hsp90aa1
Rps20
Dnajb1
Ddx3x
Serpine1
Slc25a4
Uspl1
Ap1g1
Fubp1
Tuba1b
Slc3a2
Vmn2r102
Hnrnpu
Ywhaz
Ptgs2
Tiparp
H4c11
Hsp90ab1
Ints6
Fn1
Serinc3
Tti2
Myl12a
B2m
Sfi1
Epc1
Cdc42
Nup62
Il4i1b
Atf5
Rhob
9030025P20Rik
Hnrnph1
Tmem123
Timp2
Ccl7
Banp
Ddx23
Gpx1
Klf6
Zfp869
Rptor
Phlda1
Ccl2
Eif5
1810013L24Rik
Tra2a
Snx17
Eif2b4
Calm2
Hexim2
Itga5
Gtf2b
Zfp36
Kmt2e
Taf4
LOC547349
Hnrnpab
9430015G10Rik
Setd5
Itgb1
Cnot1
H3c1
H1f1
H3c7
H2bc9
Dync1i2
Mrpl44
Insig1
Cdk12
Eif4a1
H4c12
H2bc15
H2ac15
Rap1b
Selenop
Dstn
Stat3
Pabpc1
Larp4
Ncl
Amn1
Kntc1
Ier5
Emd
Phlda3
Zfp963
Col1a1
Pole4
Pdlim5
Zc3h6
Napepld
Sde2
Rsrp1
Phf12
Tmsb4x
Lmna
H2-L
H2-D1
Hmgb2
Smim10l1
Csf1
Tmed2
Zfp1
Aaas
Gm13285
Myh9
Gapdh
Gm3435
Jun
Scaf1
Rras
Nfe2l2
Hif1a
H2bc3
Mbd6
Ddit3
Chmp4b
Resf1
Crem
Urgcp
H2ac12
Ep400
Ppp1r15a
Plekha4
Ndufs7
Retsat
Elmod3
Mknk2
Gm13290
Gm13289
Coq10b
Zfp655
Wsb1
Irf1
Hmox1
Pkd1
Prcc
Esyt2
Zfp868
Cxcl5
Atp6v0c
Tmsb10
Trib3
Rdm1
F3
Gem
Slc25a3
Wnk1
H1f0
Gcat
Actr3
Rps12
Ptms
Kmt5b
Cfl1
Tob2
Gls
Ppp1r2
Eif3a
Eif3c
Zbtb37
Pdss2
Tra2b
Pdlim7
Sptan1
Rpl10a
Glul
Slc9a1
Klf2
Fstl1
Slbp
Opa1
Adnp
Rheb
Son
Gm36712
Gart
Gm13287
Dgat1
Ctsl
Pprc1
Nufip2
Arrdc2
Rabgef1
Rnf19b
Atp2a2
Snx5
Mgme1
Eif4g2
Egr2
Rnft1
Mettl25
Ccdc59
Ldha
Usp48
Map2k2
Ywhag
Tmem168
Csrnp2
Srsf1
Raf1
Bach1
Ptpn2
Chchd2
Map1lc3b
Sec61a1
Hnrnpa1
Cbx5
Birc2
Csnk1a1
Ptpn6
Grcc10
H2-K1
Morf4l1
Sp3
Ndel1
Copz1
Ptma
Lbh
G3bp1
Baiap2
Cpeb2
Chrac1
Gadd45g
Cpsf1
Gtf2a1
Calr
Zfp866
Piezo1
Mtf2
Slc2a1
Sod1
Homer1
Gm13275
Trp53rkb
Ddx39b
Rock2
Kctd5
Arntl
Mterf1b
Nsd3
Letm2
Phf23
Pcna
Zc3h10
Rpl41
Gm13288
Ugdh
Gsto1
Gadd45a
Txnl1
Mbnl1
9530077C05Rik
Plekhg2
Dynll1
Zfp207
Ets2
Pim3
Sub1
H3c3
Arl14ep
Adprh
Gm13279
Gm13278
Arih1
Taf13
Ahnak
Slc39a10
Hipk3
Ubxn1
Nedd8
Gmpr2
Aff4
Hmgn2
Pbld2
Hnrnph3
Nfyc
Top1
Selenot
Sf3b1
Txn1
Wbp4
Elf1
Eif2b5
Acta2
Sepsecs
Pcnp
Sppl2a
Vegfa
Fasn
Galk2
Sned1
Cops2
Ccdc88a
Adnp2
Hdlbp
Col4a2
Eif4e2
Slc5a3
Mrps6
Gabpb2
Zfp637
Tmem175
Plxdc1
Gak
Rab5if
Lrrc8a
Vdr
Nsrp1
Rpl9
Lias
Hnrnpa3
Prrc2a
Parva
Dusp2
Astl
Gadd45b
S100a10
Rab11b
Gstp2
Tent5c
Sf1
Ddx59
Npm1
Mmadhc
Sik2
Egr3
Rnf10
Ep300
Ifi211
Ubald1
Rmi1
Rab1a
Hnrnpk
Phb
Gpx4
Rps8
Pknox1
Ppm1a
Rrn3
Rps3a1
Tubb4b
Lox
Rfx3
Pkm
Kansl2
Atp6v1h
Cct8
Chmp6
Ranbp2
Rpl17
P4ha1
Hspa4
Ap2m1
Ndfip1
Mtg1
Btaf1
Rabl6
Ccng1
Tut7
Polr2m
Eci1
Ppp6c
Pnp
Sharpin
Maf1
Gm35339
Htra2
Dqx1
Dpy19l4
Aup1
Fam43a
Cct2
Spindoc
5730455P16Rik
Oat
Frmd6
Fosl2
Tomm34
Stk4
Cox20
Gars
Rbks
Psmd7
Clk1
Babam2
Lrif1
Paxip1
Tcf25
Gmfb
Brwd1
Arl8b
Arf4
Ufl1
Tle3
Plec
Angptl4
Puf60
Pafah1b1
Rps27rt
Rps27
Rab13
Jak1
Fbxl3
Tbcd
Rab7
Rfc4
Wdr70
Hexim1
Dcp1a
Cap1
Calu
Kat7
Atf1
Aacs
Slc25a32
Dcaf13
Uhmk1
Tkfc
Ddb1
Zcwpw2
Azi2
Ndufs4
Ankrd11
Trib1
Pigl
Ncor1
Nop14
Grk4
Filip1l
Ywhae
Elk4
Anln
Mrpl19
Jpt1
Rdh14
Dusp11
Adpgk
Ube2j2
Ncbp2
Arl15
0610012G03Rik
Irs2
Flcn
Trmt44
Gstp1
Cul1
Pigq
Nhlrc4
Hmgcr
Rpl5
Srrm2
Luc7l
Fosb
Ctdp1
Chka
Trmo
Tmem79
Socs3
Smg5
Hspa9
Secisbp2l
Pten
Kdm6b
Fem1b
H3f3a
Zfp598
Sec62
Phf20l1
Notch2
Knl1
Dcaf5
Tmem87b
Rab33b
Mmaa
S1pr4
Ncln
Tm9sf3
Crebl2
Cct4
Caprin1
Stau1
Prnp
Prn
Ppp1ccb
Ppp1cc
Cotl1
Amdhd2
Rps6
Nubp1
N4bp2l2
Mterf1a
Mrpl39
Hmgn1
Gm13277
Trir
Get3
Lrp6
Gpr84
Tsnaxip1
Sox9
Rnf34
Ranbp10
Cnbp
Serbp1
Rprd2
Rplp1
Ccnt1
4930415O20Rik
Ube2h
Saraf
Aven
Ttc41
Hsp90b1
Lrrc59
Ube2d3
Crtc2
Nrf1
Relb
Anapc5
Ing1
Tab1
Rraga
Ndufa9
Akap3
Sun2
Fscn1
Pdia3
Ndufaf5
Esf1
Ero1a
Catsper2
Snx18
Fitm2
Usp53
Tbc1d13
Rpl38
Prkar1a
Kat6a
Twf1
Klhl24
Atf6
Ilf2
Cald1
Nme1
Atp5g2
Rabggtb
Pitpna
Atg10
Rbl2
Nptn
Alyref2
Zdhhc1
Gas1
Tubb6
Fbxl18
Gmeb2
Plekho2
Ppp2cb
Sugct
Mplkip
Atp5g3
Lgals1
Zfp706
Gnas
Tpm4
Pcmt1
Pex14
Ube2z
Bcl7b
Atp5o
Aff1
Copb1
Rubcn
Dnajb12
Zfp644
Rad54l2
Ier5l
Nsfl1c
Nde1
Marf1
Map2k4
Ddx19b
Trdmt1
Pdcd7
Tada3
Rpl23
Arpc4
Washc4
Rbm3
G3bp2
Mapkbp1
Eprs
Adrm1
Arl4d
Hnrnpdl
Enoph1
Arcn1
Kif2c
Med6
Birc6
Cd164
Mthfd2
Arf1
Serinc1
Zswim6
Ndufb8
Rpl13
Cdkn2aipnl
Mylip
Slc16a1
Rbbp6
Arl2bp
Malsu1
S100a6
S100a5
Peli1
Tmem248
Cpsf6
Rgl1
Arpc5
Ube3b
Rbm33
Kctd10
Mapk1ip1l
Gspt1
Ankrd17
Smg8
Rcn2
Zc3h11a
Zbed6
St3gal2
Dennd6a
Ndufs3
Kbtbd4
Srp19
Gatb
Dip2b
Usp16
Pafah1b2
Zmat1
Pomp
Bclaf1
Drg2
Tmem88
Krr1
Hnrnpc
Degs1
Rab21
Polg2
Ccdc107
Nagk
Ube2l3
Pskh1
Slc12a4
Trim39
Tmf1
Nsun6
Arl5b
AW549877
Camk2d
Slc7a1
Csgalnact2
Terf2
Zfp119b
Tpp2
Ube2g1
Kpnb1
Get4
Vamp2
Susd6
Rbm17
Lonp1
Catsperd
Oaz1
E4f1
Gabarap
Mapk1
Csrnp1
Rtn4
Lnpep
Vdac2
Ifrd2
Pdk4
Ddx17
Kmt2d
Wtap
Etf1
Aasdh
Smad1
Snrpd3
Niban2
Gucd1
Cd248
Snrpc
Golph3
Enc1
Frs2
Mff
Flnc
Dhx33
Taf1d
4931406C07Rik
Lrrc58
Btrc
Usp38
Tmem39a
Map3k6
Ell2
Tardbp
Creb1
Birc3
Rpl22l1
Txndc11
Bud13
Matr3
Ppp2r3a
Cstf3
Ahctf1
Srcap
Lcn2
Dnajc16
Casp9
Bcl2l13
Sft2d3
Slc7a5
Trp53inp1
Rab43
Pigu
Srek1
Ube2v2
Hnrnpm
Sec22b
Rbm14
Gm21992
N6amt1
Mmp2
Ints5
Slc5a5
Rpl18a
1810009A15Rik
Ppp2ca
Klhl17
Lemd2
Seh1l
Tax1bp1
Pold3
Cenps
Ankrd40
Ssbp1
Mif
Caprin2
Tmed5
Nars
Dynll2
Ccdc18
Aars
Dnttip2
Dhx16
2610001J05Rik
Tmed10
Tm2d1
Trmt1
Rpl10
Nacc1
Smarca4
Sart3
Iscu
Psmd12
Pakap
Gm13276
Clptm1l
Azin1
Tsfm
Tmem11
Sbf2
Nup153
Fermt2
Dhx9