ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620288 | NIH/3T3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◣ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Sspn
Pgk1
Il31ra
Kpna1
Dchs2
Ccn1
Errfi1
Ifrd1
Egr1
Serpine1
Flnc
Ier2
Actg1
Thbs1
Actb
Nr4a1
Dusp1
Dusp5
Ptgs2
Tmem125
Abhd6
Ubc
Vim
Junb
Cldn34d
Olfr806
Mt2
Tpm1
Fos
Dnajb1
Sgk1
Mbd6
Ddit3
Ccn2
Hspa5
Homer1
Btg2
Gadd45g
Mt1
Zyx
Pknox1
Ifna13
Id3
Atf4
Hspa8
Ugdh
Ttc4
Syn2
Csf1
Jun
Zfp598
Dcaf5
Gm13285
Gm13290
Gm13289
Gm13287
Gm13288
Insig1
Wwox
Gm13275
Gm13279
Gm13278
Btg1
Vcl
Ier3
Flot1
Vmn2r4
Fn1
Arc
Celf2
Timp2
Mat2a
Egr3
Prickle1
Tle1
Hmox1
Gtf2i
Zfand5
Gm13272
Trim50
Gm13277
Gm13276
Ifnz
BC005537
Calm1
Pdlim5
Rubcn
Fyttd1
Ier5
Cbr3
Plk2
Dnaja1
Sf3a3
Mcl1
Ccl7
Csf2ra
Aadacl2fm1
Palld
Myh9
Med23
Tmsb4x
Slc2a1
Rdm1
Jund
Iqcn
Lgals1
Nemf
Itga5
Tab1
Tex14
Tob1
Map7d1
Gm3448
Gm3417
Gm3435
Utp14b
Acsl3
Prdx1
Ap1g1
Aaas
Noct
Cav1
Tob2
Smad1
Fyco1
Lyrm2
Mtf2
Ddx5
Cep95
Sdc4
Tcte3
Ermard
Oasl1
Hmgcr
Nme1
Mia2
Sqle
H3f3b
F3
Trib1
Cdkn2aipnl
Srxn1
Prkce
Cltc
9030025P20Rik
Arl8b
H4c2
H3c2
H2ac4
Gm13283
Phlda1
Bod1l
Rps29
Myl12a
Gtf3c3
Mrpl20
Mrps2
1700007K13Rik
Olfr938
Kdm2a
Zfp36
Yap1
1810013L24Rik
Lmna
Blmh
Smo
Fth1
Hexim2
Nipbl
Rasl2-9
Ctnnb1
Atp2a2
S100a3
S100a2
Rpl10a
Ankrd40
Ftl1
Id1
Zswim6
Oxct1
Rel
Traf6
Cdc42ep3
Cobll1
Tiparp
Fem1b
Rgl2
Lrp12
Nfat5
Arl14ep
Fosb
Notch2
Ppia
Lrp6
Nrf1
Utp3
Lbh
Fbxo7
Sox9
Rcn2
Ppp1r15a
Plekha4
Ifi211
H3c11
H2bc22
H2ac22
H1f5
Actr3
H3c6
Frg2f1
Foxj3
Them4
Rtn4
Tpt1
Zfp36l2
Dnajb4
Fubp1
Rpl22l1
Ctnnd1
Drg1
Acap2
Eml4
Dnajc24
Tox4
Rab2b
Csrp2
Eef1a1
Pbld2
Hnrnph3
Azin1
Uspl1
Tcea1
Ccl2
Cul1
Lsm11
Idi1
Tnfrsf12a
Thoc6
Hcfc1r1
Cldn6
H2-DMa
Brd2
Lox
Htra2
Dqx1
Aup1
Snx18
Camk2d
Cldn12
Sesn1
Kansl3
Fer1l5
H3c15
H3c14
H2ac19
H2ac18
Mideas
Chac1
Mrps33
Glis1
Nipsnap2
Surf6
Cpd
Raf1
Ncbp2
0610012G03Rik
S100a6
S100a5
Ptbp1
Qser1
Guca2b
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Sfi1
Baiap2
Actn4
Vamp4
Slc35g3
Polr2a
Opa1
Rnft1
Ccnl1
Pds5b
Ppp2cb
Cdkn1a
Ankrd1
Nabp1
Mterf1a
Ccdc88a
Rpl27
Hbegf
Hrob
4931408C20Rik
Kif21b
H4c3
H1f6
Fasn
Cipc
Tbp
Psmb1
Ulk2
Borcs6
Dgat1
Pten
Ier5l
Gpatch8
Uvssa
Cacybp
Rap2b
Gm13286
Tnfaip6
Tab2
Atp6v1h
Txnrd1
Rab34
Proca1
Rps20
Aacs
Mrps31
Rnf11
Atad2b
Naa16
Dlx2
Srsf1
Hnrnph1
Timp1
Ndufs7
H2bc21
H2ac21
H2ac20
Pdia3
Catsper2
Sec22b
Med7
Sh3glb1
Eif4a2
Ube2z
Mapkbp1
Agk
Stx18
Slc25a3
Cebpb
H3c7
H2bc9
Galk2
Cops2
Plag1
Chchd7
Bhlhe40
Fam133b
Hnrnpu
Slc39a13
Lrig2
Medag
Ttc39b
Cbwd1
Hrh2
Rpl3
Ddit4
Mterf1b
Wdr70
Faf1
Wdr25
Wars
Cyp51
Sgcd
Rhob
Pcbp2
Fus
Creb1
Tef
Ythdf2
Ddhd2
Cfl1
Sptan1
Apc2
Rps15
Ubb
Eci1
Slc25a32
Dcaf13
Rhoq
Uhrf1bp1l
Pex2
Ubtf
Pabpc4
Esyt2
Tlcd2
H4f16
H2aj
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
H4c14
H2bc6
Cxcl1
Eif1
Cwc22
H4c4
H1f2
Klf7
Hnrnpa2b1
Cbx3
Eapp
Ube2a
H1f4
H3c13
H2bc18
Ppp1r10
Mrps18b
H2bc12
H4c17
Arf6
Nfkbia
Tsc22d1
H4c8
H3c8
H2ac10
Taf12
Slc35e3
Zfp143
Poldip3
H4c9
H2bc11
H2ac11
Fam53c
Raly
Mdm2
Gtf3c6
Cited2
Sp1
Fam227b
Dtwd1
Srsf2
Mfsd11
Adamts1
Tmem267
H3c10
Zfp36l1
Slc38a2
Rplp0
Cebpd
H2bc13
H2ac13
H4c6
H1f3
Sqstm1
Cdh12
Sirt4
Herpud1
Nfkbiz
Cirbp
Pnrc1
Unk
Ppp1r12a
Lima1
H2bc14
Txnip
H4c1
Clcn4
Znfx1
Pcif1
Scrib
Tuba1c
Clec2d
Calcoco1
Yeats4
Srsf5
Fam174c
Odc1
Ptp4a1
Efcab2
Tuba1a
Tmem107
Sik1
Rbm39
H2ax
Srsf6
Rgs2
Eef2
Srsf3
Litaf
H2bc4
H2ac6
Pcbp1
Hsp90aa1
Ddx3x
Slc25a4
Tuba1b
Slc3a2
Vmn2r102
Ywhaz
H4c11
Hsp90ab1
Ints6
Serinc3
Tti2
B2m
Epc1
Cdc42
Nup62
Il4i1b
Atf5
Tmem123
Banp
Ddx23
Gpx1
Klf6
Zfp869
Rptor
Eif5
Tra2a
Snx17
Eif2b4
Calm2
Gtf2b
Kmt2e
Taf4
LOC547349
Hnrnpab
9430015G10Rik
Setd5
Itgb1
Cnot1
H3c1
H1f1
Dync1i2
Mrpl44
Cdk12
Eif4a1
H4c12
H2bc15
H2ac15
Rap1b
Selenop
Dstn
Stat3
Pabpc1
Larp4
Ncl
Amn1
Kntc1
Emd
Phlda3
Zfp963
Col1a1
Pole4
Zc3h6
Napepld
Sde2
Rsrp1
Phf12
H2-L
H2-D1
Hmgb2
Smim10l1
Tmed2
Zfp1
Gapdh
Scaf1
Rras
Nfe2l2
Hif1a
H2bc3
Chmp4b
Resf1
Crem
Urgcp
H2ac12
Ep400
Retsat
Elmod3
Mknk2
Coq10b
Zfp655
Wsb1
Irf1
Pkd1
Prcc
Zfp868
Cxcl5
Atp6v0c
Tmsb10
Trib3
Gem
Wnk1
H1f0
Gcat
Rps12
Ptms
Kmt5b
Gls
Ppp1r2
Eif3a
Eif3c
Zbtb37
Pdss2
Tra2b
Pdlim7
Glul
Slc9a1
Klf2
Fstl1
Slbp
Adnp
Rheb
Son
Gm36712
Gart
Ctsl
Pprc1
Nufip2
Arrdc2
Rabgef1
Rnf19b
Snx5
Mgme1
Eif4g2
Egr2
Mettl25
Ccdc59
Ldha
Usp48
Map2k2
Ywhag
Tmem168
Csrnp2
Bach1
Ptpn2
Chchd2
Map1lc3b
Sec61a1
Hnrnpa1
Cbx5
Birc2
Csnk1a1
Ptpn6
Grcc10
H2-K1
Morf4l1
Sp3
Ndel1
Copz1
Ptma
G3bp1
Cpeb2
Chrac1
Cpsf1
Gtf2a1
Calr
Zfp866
Piezo1
Sod1
Trp53rkb
Ddx39b
Rock2
Kctd5
Arntl
Nsd3
Letm2
Phf23
Pcna
Zc3h10
Rpl41
Gsto1
Gadd45a
Txnl1
Mbnl1
9530077C05Rik
Plekhg2
Dynll1
Zfp207
Ets2
Pim3
Sub1
H3c3
Adprh
Arih1
Taf13
Ahnak
Slc39a10
Hipk3
Ubxn1
Nedd8
Gmpr2
Aff4
Hmgn2
Nfyc
Top1
Selenot
Sf3b1
Txn1
Wbp4
Elf1
Eif2b5
Acta2
Sepsecs
Pcnp
Sppl2a
Vegfa
Sned1
Adnp2
Hdlbp
Col4a2
Eif4e2
Slc5a3
Mrps6
Gabpb2
Zfp637
Tmem175
Plxdc1
Gak
Rab5if
Lrrc8a
Vdr
Nsrp1
Rpl9
Lias
Hnrnpa3
Prrc2a
Parva
Dusp2
Astl
Gadd45b
S100a10
Rab11b
Gstp2
Dapk3
Tent5c
Sf1
Ddx59
Npm1
Mmadhc
Sik2
Rnf10
Ep300
Ubald1
Rmi1
Rab1a
Hnrnpk
Phb
Gpx4
Rps8
Ppm1a
Rrn3
Rps3a1
Tubb4b
Rfx3
Pkm
Kansl2
Cct8
Chmp6
Ranbp2
Rpl17
P4ha1
Hspa4
Ap2m1
Ndfip1
Mtg1
Btaf1
Rabl6
Ccng1
Tut7
Polr2m
Ppp6c
Pnp
Sharpin
Maf1
Gm35339
Dpy19l4
Fam43a
Cct2
Spindoc
5730455P16Rik
Oat
Frmd6
Fosl2
Tomm34
Stk4
Cox20
Gars
Rbks
Psmd7
Clk1
Babam2
Lrif1
Paxip1
Tcf25
Gmfb
Brwd1
Arf4
Ufl1
Tle3
Plec
Angptl4
Puf60
Pafah1b1
Rps27rt
Rps27
Rab13
Jak1
Fbxl3
Tbcd
Rab7
Rfc4
Hexim1
Dcp1a
Cap1
Calu
Kat7
Atf1
Uhmk1
Tkfc
Ddb1
Zcwpw2
Azi2
Ndufs4
Ankrd11
Pigl
Ncor1
Nop14
Grk4
Filip1l
Ywhae
Elk4
Anln
Mrpl19
Jpt1
Rdh14
Dusp11
Adpgk
Ube2j2
Arl15
Irs2
Flcn
Trmt44
Gstp1
Pigq
Nhlrc4
Rpl5
Srrm2
Luc7l
Ctdp1
Chka
Trmo
Tmem79
Socs3
Smg5
Hspa9
Secisbp2l
Kdm6b
H3f3a
Sec62
Phf20l1
Knl1
Tmem87b
Rab33b
Mmaa
S1pr4
Ncln
Tm9sf3
Crebl2
Cct4
Caprin1
Stau1
Prnp
Prn
Ppp1ccb
Ppp1cc
Cotl1
Amdhd2
Rps6
Nubp1
N4bp2l2
Mrpl39
Hmgn1
Trir
Get3
Gpr84
Tsnaxip1
Rnf34
Ranbp10
Cnbp
Serbp1
Rprd2
Rplp1
Ccnt1
4930415O20Rik
Ube2h
Saraf
Aven
Ttc41
Hsp90b1
Lrrc59
Ube2d3
Crtc2
Relb
Anapc5
Ing1
Rraga
Ndufa9
Akap3
Sun2
Fscn1
Ndufaf5
Esf1
Ero1a
Fitm2
Usp53
Tbc1d13
Rpl38
Prkar1a
Kat6a
Twf1
Klhl24
Atf6
Ilf2
Cald1
Atp5g2
Rabggtb
Pitpna
Atg10
Rbl2
Nptn
Alyref2
Zdhhc1
Gas1
Tubb6
Fbxl18
Gmeb2
Plekho2
Sugct
Mplkip
Atp5g3
Zfp706
Gnas
Tpm4
Pcmt1
Pex14
Bcl7b
Atp5o
Aff1
Copb1
Dnajb12
Zfp644
Rad54l2
Nsfl1c
Nde1
Marf1
Map2k4
Ddx19b
Trdmt1
Pdcd7
Tada3
Rpl23
Arpc4
Washc4
Rbm3
G3bp2
Eprs
Adrm1
Arl4d
Hnrnpdl
Enoph1
Arcn1
Kif2c
Med6
Birc6
Cd164
Mthfd2
Arf1
Serinc1
Ndufb8
Rpl13
Mylip
Slc16a1
Rbbp6
Arl2bp
Malsu1
Peli1
Tmem248
Cpsf6
Rgl1
Arpc5
Ube3b
Rbm33
Kctd10
Mapk1ip1l
Gspt1
Ankrd17
Smg8
Zc3h11a
Zbed6
St3gal2
Dennd6a