ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620289 | NIH/3T3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◣ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Sspn
Pgk1
Il31ra
Kpna1
Dchs2
Cldn34d
Tmem125
Abhd6
Olfr806
Ifna13
Gas1
Vmn2r4
Gm13285
Gm13290
Gm13289
Cpsf1
Oasl1
Ddit4
Tle2
H3c15
H3c14
H2ac19
H2ac18
H3c13
H2bc18
Lrp6
Klf7
Uchl5
Ro60
H2bc21
H2ac21
H2ac20
Gm13287
Gm13288
Pten
Zfp598
Rnf187
Zfp36l2
Lox
Hexim2
Champ1
H3c11
H2bc22
H2ac22
H1f5
Trim50
H3c6
Gm13275
Wwox
Zfp474
Arl8b
Cenpu
Ccdc88a
Col6a2
Aadacl2fm1
Nfat5
Mettl25
Ccdc59
Pknox1
Trdmt1
H4c1
H3c1
H1f1
Klf6
Tab1
Msmo1
H2bc3
H3c3
H4c2
H3c2
H2ac4
H4c12
H2bc15
H2ac15
Nos3
Zfand5
Rubcn
Fyttd1
Kpnb1
Enc1
Ugt1a6b
Rad54l2
H3c7
H2bc9
Gm13279
Gm13278
Gm13277
Gm13276
Cltc
Eps15
Lrriq3
Fpgt
Adamts1
Tle1
Zfp143
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Mtf2
Hmgcr
H3c10
H2bc13
H2ac13
H2bc14
Pdgfc
Trp53rkb
Rdh14
H4c3
H1f6
H1f2
Fra10ac1
Ssh2
Stx16
Errfi1
Mrpl39
Actg1
Nsun6
Arl5b
Scd2
Atf4
H2bc12
Mrpl44
H2ac12
Ccng1
Hdlbp
Septin2
Frg2f1
Foxj3
Plk2
Ankrd40
Slc33a1
Chd2
Otud7b
Prl2c2
Unk
Srsf1
Man2b2
Cited2
Calm1
Ifnz
Gm13272
Plcd3
Acbd4
Ncam1
Aaas
Hoxd8
Gm13283
Pigc
4930558K02Rik
Tmem256
Nlgn2
Tmem17
Ccnl1
Usp30
Tmem242
Cep135
Gm3448
Gm3417
9030025P20Rik
Pkd2
Lats2
Ywhah
Dhx8
H2bc6
H1f4
Mterf1a
Rnf6
Mterf1b
Atn1
Aacs
Shisa4
Dtd1
Gtf2i
Dock7
Btbd8
D030056L22Rik
Uspl1
Hnrnpu
Zc3h6
Cyp51
Ctnnb1
Rab33b
Galk2
Cops2
Rbx1
Gm13286
Gm13271
H4c14
Eef1a1
Cebpd
Smg8
Ccn2
Csf2ra
Jmjd7
H4c4
H4c11
Dcaf5
Tcea1
Rbm6
H4c8
H3c8
H2ac10
Lpar1
Nfyc
Fem1b
Tab2
Arf1
Zfp959
Sf3b4
Ssbp2
Ep300
Ifi211
Ncbp2
0610012G03Rik
Arfgap2
Morf4l1
Top1
Il6ra
Trib1
Rraga
Dmap1
Zfhx4
Ndufs7
Zcrb1
Pphln1
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
Ndel1
Gars
Trmt1
Nacc1
Slc39a13
Eif4a2
Csf1
Cox20
Rps27a
Clhc1
Erbb2
Rps8
Copb1
Fam120b
Heatr5a
Erlec1
Asb3
Ubc
Nemf
Txnl1
Pfdn5
Mettl9
Metap1d
Mtap
Cgref1
Abhd1
Hrob
Tuba1a
Sp3
Psmd3
Dr1
Col3a1
Wdr27
1600012H06Rik
4931408C20Rik
Gm4307
Gm4305
Gm4303
Fn1
Ubtd2
Trim65
Prl2c5
H4f16
H2aj
Rdm1
Txn1
Mmadhc
Trp53rka
Zfp438
Ptn
Ciao3
Birc6
Pdk4
Ube2f
H4c9
H2bc11
H2ac11
Fam227b
Dtwd1
Rrn3
Trim28
Yap1
Tob1
Hmox1
Fosl2
Aasdh
Ago1
Trabd2b
Actb
Nabp1
H1f0
Gcat
Plxdc1
Mmaa
Mgat1
Nup54
Nfkbil1
Atp6v1g2
Faap20
Pcdh18
Tmsb10
Bms1
Usp47
Them4
Phax
Aldh7a1
Tgfbr3
2310022B05Rik
Arid1a
Eml1
Chordc1
Dzip3
Cip2a
Ube2g2
Tmem30a
Pak3
Znfx1
Hnrnph1
Mtdh
Camk1
B3gntl1
Raf1
Dhx16
Cr1l
Rtn4rl1
Dph1
Oma1
Pdzrn3
Zfp41
Ppp1r15b
Insr
Sfi1
Atxn7l3b
Haspin
Kansl3
Fer1l5
Myo10
Zfp710
Rhob
Wls
Rps29
Resf1
Arl14ep
Lrrc59
Mapkbp1
Ccdc107
Rpl31
Traf7
Ropn1l
Rgl2
Mideas
Srp68
Efnb2
Rnf11
Btg1
Mbnl1
Ppp2cb
Cldn12
Sem1
Tle6
Ppp1r12a
Ulk2
Plin2
Tmem131
Serinc1
Rhou
Eefsec
Poldip3
Cdkn1a
Efcab2
Eif5
Adprh
Mapk1ip1l
Rcn2
Srp19
Bbs5
Borcs5
Ppp1r9b
Dpy19l4
Rad9b
Elp1
Abitram
Ftl1
Wdr70
Mrps2
1700007K13Rik
Pex2
Tmem139
Casp2
Bnc2
Dnajc19
Nsf
Crybg1
Denr
Ddx5
Cep95
Tle4
Ppip5k2
Gin1
Eef1g
Pdss2
Eif4e2
Col1a2
Rps27l
Flrt2
Rapgef3
Foxg1
H4c17
Pcbp1
Ap1g1
Pdia3
Catsper2
Hnrnpdl
Enoph1
Ythdf2
Tekt2
Adprhl2
Prcd
Cygb
Larp4
Alad
Pole3
Utp3
Maml3
F3
Vegfa
Ube2g1
Fzd7
Sppl2a
Rps3a1
Eci1
Ttc4
Mnd1
Ywhaz
Clptm1l
Ndst2
Net1
Zfp827
Hif1a
Kansl2
Crlf3
Fat4
Zfp706
Rab5a
Trpm7
Efemp1
Gm2237
Cav1
Zfp213
Fbxo7
Lurap1l
Aqp5
Thrb
Rpl21
Tpk1
C2cd5
Rnaset2b
Klhdc2
Rnaset2a
Lrp11
Sepsecs
Kmt2e
Usp53
Pofut2
Dclre1b
Ap4b1
Cav2
Efcab14
Rbm39
Cnbp
Isy1
Mpp7
Synpo
Eif4h
Psma6
H2bc4
H2ac6
Htra2
Dqx1
Aup1
Tmem262
Zfpl1
Cdca5
Rpl29
Slc35g3
Polr2a
Tex14
H3f3b
Cxcl1
Eif1
Cwc22
Mt1
Jund
Iqcn
Mat2a
Fth1
Hnrnpa2b1
Cbx3
Junb
Eapp
Ube2a
Ppp1r10
Mrps18b
Fyco1
Ier3
Flot1
Arf6
Hspa5
Mt2
Hspa8
Rpl3
Nfkbia
Tsc22d1
Dusp1
Egr1
Taf12
Ubb
Ppia
Slc35e3
Vim
Mcl1
Ier2
Id3
Fam53c
Raly
Mdm2
Gtf3c6
Nr4a1
Sp1
Ifrd1
Srsf2
Mfsd11
Zyx
Chac1
Thbs1
Vcl
Tmem267
Dusp5
Zfp36l1
Fus
Slc38a2
Rplp0
Sdc4
H4c6
H1f3
Sqstm1
Cdh12
Tcte3
Sirt4
Ermard
Herpud1
Cebpb
Nfkbiz
Cirbp
Btg2
Fos
Pnrc1
Id1
Tpt1
BC005537
Lima1
Prdx1
Ccn1
Txnip
Clcn4
Pcif1
Scrib
Tuba1c
Clec2d
Calcoco1
Yeats4
Dnajb4
Srsf5
Fam174c
Odc1
Ptp4a1
Tmem107
Sgk1
Sik1
Tpm1
H2ax
Srsf6
Rgs2
H2-DMa
Eef2
Brd2
Dnaja1
Srsf3
Palld
Litaf
Hsp90aa1
Rps20
Dnajb1
Ddx3x
Serpine1
Slc25a4
Fubp1
Tuba1b
Slc3a2
Vmn2r102
Ptgs2
Tiparp
Hsp90ab1
Ints6
Serinc3
Tti2
Myl12a
B2m
Epc1
Cdc42
Nup62
Il4i1b
Atf5
Tmem123
Timp2
Ccl7
Banp
Ddx23
Gpx1
Zfp869
Rptor
Phlda1
Ccl2
1810013L24Rik
Tra2a
Snx17
Eif2b4
Calm2
Itga5
Gtf2b
Zfp36
Taf4
LOC547349
Hnrnpab
9430015G10Rik
Setd5
Itgb1
Cnot1
Dync1i2
Insig1
Cdk12
Eif4a1
Rap1b
Selenop
Dstn
Stat3
Pabpc1
Ncl
Amn1
Kntc1
Ier5
Emd
Phlda3
Zfp963
Col1a1
Pole4
Pdlim5
Napepld
Sde2
Rsrp1
Phf12
Tmsb4x
Lmna
H2-L
H2-D1
Hmgb2
Smim10l1
Tmed2
Zfp1
Myh9
Gapdh
Gm3435
Jun
Scaf1
Rras
Nfe2l2
Mbd6
Ddit3
Chmp4b
Crem
Urgcp
Ep400
Ppp1r15a
Plekha4
Retsat
Elmod3
Mknk2
Coq10b
Zfp655
Wsb1
Irf1
Pkd1
Prcc
Esyt2
Zfp868
Cxcl5
Atp6v0c
Trib3
Gem
Slc25a3
Wnk1
Actr3
Rps12
Ptms
Kmt5b
Cfl1
Tob2
Gls
Ppp1r2
Eif3a
Eif3c
Zbtb37
Tra2b
Pdlim7
Sptan1
Rpl10a
Glul
Slc9a1
Klf2
Fstl1
Slbp
Opa1
Adnp
Rheb
Son
Gm36712
Gart
Dgat1
Ctsl
Pprc1
Nufip2
Arrdc2
Rabgef1
Rnf19b
Atp2a2
Snx5
Mgme1
Eif4g2
Egr2
Rnft1
Ldha
Usp48
Map2k2
Ywhag
Tmem168
Csrnp2
Bach1
Ptpn2
Chchd2
Map1lc3b
Sec61a1
Hnrnpa1
Cbx5
Birc2
Csnk1a1
Ptpn6
Grcc10
H2-K1
Copz1
Ptma
Lbh
G3bp1
Baiap2
Cpeb2
Chrac1
Gadd45g
Gtf2a1
Calr
Zfp866
Piezo1
Slc2a1
Sod1
Homer1
Ddx39b
Rock2
Kctd5
Arntl
Nsd3
Letm2
Phf23
Pcna
Zc3h10
Rpl41
Ugdh
Gsto1
Gadd45a
9530077C05Rik
Plekhg2
Dynll1
Zfp207
Ets2
Pim3
Sub1
Arih1
Taf13
Ahnak
Slc39a10
Hipk3
Ubxn1
Nedd8
Gmpr2
Aff4
Hmgn2
Pbld2
Hnrnph3
Selenot
Sf3b1
Wbp4
Elf1
Eif2b5
Acta2
Pcnp
Fasn
Sned1
Adnp2
Col4a2
Slc5a3
Mrps6
Gabpb2
Zfp637
Tmem175
Gak
Rab5if
Lrrc8a
Vdr
Nsrp1
Rpl9
Lias
Hnrnpa3
Prrc2a
Parva
Dusp2
Astl
Gadd45b
S100a10
Rab11b
Gstp2
Dapk3
Tent5c
Sf1
Ddx59
Npm1
Sik2
Egr3
Rnf10
Ubald1
Rmi1
Rab1a
Hnrnpk
Phb
Gpx4
Ppm1a
Tubb4b
Rfx3
Pkm
Atp6v1h
Cct8
Chmp6
Ranbp2
Rpl17
P4ha1
Hspa4
Ap2m1
Ndfip1
Mtg1
Btaf1
Rabl6
Tut7
Polr2m
Ppp6c
Pnp
Sharpin
Maf1
Gm35339
Fam43a
Cct2
Spindoc
5730455P16Rik
Oat
Frmd6
Tomm34
Stk4
Rbks
Psmd7
Clk1
Babam2
Lrif1
Paxip1
Tcf25
Gmfb
Brwd1
Arf4
Ufl1
Tle3
Plec
Angptl4
Puf60
Pafah1b1
Rps27rt
Rps27
Rab13
Jak1
Fbxl3
Tbcd
Rab7
Rfc4
Hexim1
Dcp1a
Cap1
Calu
Kat7
Atf1
Slc25a32
Dcaf13
Uhmk1
Tkfc
Ddb1
Zcwpw2
Azi2
Ndufs4
Ankrd11
Pigl
Ncor1
Nop14
Grk4
Filip1l
Ywhae
Elk4
Anln
Mrpl19
Jpt1
Dusp11
Adpgk
Ube2j2
Arl15
Irs2
Flcn
Trmt44
Gstp1
Cul1
Pigq
Nhlrc4
Rpl5
Srrm2
Luc7l
Fosb
Ctdp1
Chka
Trmo
Tmem79
Socs3
Smg5
Hspa9
Secisbp2l
Kdm6b
H3f3a
Sec62
Phf20l1
Notch2
Knl1
Tmem87b
S1pr4
Ncln
Tm9sf3
Crebl2
Cct4
Caprin1
Stau1
Prnp
Prn
Ppp1ccb
Ppp1cc
Cotl1
Amdhd2
Rps6
Nubp1
N4bp2l2
Hmgn1
Trir
Get3
Gpr84
Tsnaxip1
Sox9
Rnf34
Ranbp10
Serbp1
Rprd2
Rplp1