ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9144817 | 3T3-L1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◣ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Errfi1
Slc35g3
Polr2a
Arf6
Ier3
Flot1
Cxcl1
Mt1
Egr1
Zyx
Eif1
Id3
Cwc22
Dusp1
Vcl
Actg1
Fos
Tex14
Atf4
Sdc4
Ddx5
Cep95
Klf7
Actb
Junb
Mat2a
Hspa8
Fth1
Hnrnpa2b1
Cbx3
Mt2
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
Mdm2
Ier2
Ppp1r10
Mrps18b
Ptp4a1
Btg2
Id1
Jund
Iqcn
Nfkbiz
Vdr
Cebpd
Nr4a1
Tsc22d1
Sik1
Zfand5
Raly
Eif4a2
Eef1a1
Cited2
Tuba1c
Coq10b
Ppia
Palld
Thbs1
Emd
Ptgs2
Dusp5
Adamts1
H4c3
H1f6
Rgs2
Dstn
Taf12
Srsf5
Myl12a
Zfp36
Plekhg2
Ubb
Ubc
Eapp
Cebpb
Itga5
Ccl2
Sgk1
Fn1
Ccl7
Fam53c
Vim
Myh9
H3c15
H3c14
H2ac19
H2ac18
Ccn1
Nfkbia
Cdkn1a
Cldn34d
Ccnl1
Btg1
H3c11
H2bc22
H2ac22
H1f5
Col4a2
Litaf
H3f3b
Ctnnb1
Poldip3
Pdlim5
Tpt1
Rap1b
Acta2
Tmem123
H4c14
Ifrd1
Hspa5
BC005537
Itgb1
Herpud1
Cdc42
Ppp1r12a
Sqstm1
Prnp
Prn
Tra2a
Sirt4
Mcl1
Dnajb4
Gtf3c6
Ppp1r15a
Plekha4
H4f16
H2aj
Tmem107
Clec2d
Uap1
Cirbp
Fam174c
Stat3
Rnf19b
LOC547349
H2-L
H2-D1
Tpm4
Slc38a2
Serpine1
H2bc6
H4c4
Srsf3
Rplp0
Jun
Pdlim7
Pakap
Rhob
Cfl1
Lcn2
Ywhaz
Crem
Fstl1
Egr2
Fus
Plk2
Rheb
Ddit4
H4c2
H3c2
H2ac4
Calu
1810013L24Rik
Ube3b
Kctd10
Slc25a3
Amn1
Srsf6
Lmna
F3
Elovl5
Tiparp
Top1
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Dnaja1
Flna
Cpeb2
Zfp36l1
Tmsb4x
Msrb3
Cald1
Fubp1
Filip1l
Spindoc
Dnajb1
Ier5
Slc35e3
Tada3
Arpc4
Fosb
Glrx
Klf6
Lima1
Tob1
Phlda3
Scaf1
Rras
Ddx3x
Rnf34
H2bc12
H4c9
H2bc11
H2ac11
Rbks
Babam2
Rpl10
Txnip
Ftl1
Wdr1
H3c6
Csrnp1
Hsp90aa1
Arl4d
Kntc1
Kmt2e
Atp6v0c
Rab7
Nabp1
Egr3
Efcab2
Taf13
Zfp36l2
Cstf3
Timp2
Rpl3
Chchd2
Fkbp5
Actr3
Hif1a
Selenop
B2m
Nfat5
Oat
Yeats4
Slc25a4
Hnrnph1
Wsb1
Rnft1
Klf2
Irs2
H4c17
Sptan1
Gadd45g
Pitpna
Aff4
Esyt2
Mob3a
Izumo4
Rbm39
Nagk
Pnrc1
Cct2
Prkar1a
Rgl1
Arpc5
Rsu1
Hsp90ab1
Lrrc8a
Pkd1
Rpl10a
Hnrnpu
Tpm1
Zfp869
Pabpc1
Sik2
Gpx4
H2-DMa
Brd2
Adnp2
Smim10l1
Slc2a1
Niban2
Rps20
Rab11b
Btaf1
Mbnl1
Sart3
Iscu
Sf1
Hspa9
Ell2
Opa3
H3c10
H2bc13
H2ac13
H2bc14
Mafk
Ncl
Ddx19b
Aars
Nfe2l2
S100a10
Rhoj
Ptpn2
Rpl9
Lias
Ptma
Aff1
Ints6
Ppp1r2
Tmem259
Cnn2
Fosl2
Sub1
Larp4
Gem
Srsf2
Mfsd11
Ctsl
Ugdh
Maff
Slc3a2
Etf1
Ctnnd1
Srf
Rnd3
Chac1
Tuba1a
Sox9
Odc1
Usp38
Eef2
Hipk3
Sf3b1
Gapdh
Cltc
Homer1
Ranbp2
Eif4g2
Ube2h
Zfp644
Id2
Gm3448
Gm3417
Tcte3
Ermard
Calm1
Cdk12
Resf1
Ppp2cb
AW549877
Eif4a1
Bach1
Ywhag
H2-K1
Pcif1
Prrc2a
Ubald1
Mgrn1
Nup62
Il4i1b
Atf5
Slc35a4
Apbb3
Mknk2
Dgat1
Prdx1
Calr
Ero1a
Ahnak
Golph3
Txndc11
Gpx1
Jak1
Tob2
Pdk4
Hnrnpab
Arglu1
Znfx1
Trib1
Tra2b
Mideas
Tmem175
Gak
Asns
Myl6b
Myl6
Slc25a25
Tmed5
Ccdc18
Sbf2
Eif5
Ulk2
Serinc3
Parva
Map3k6
Pole4
Trib3
Sp1
Urgcp
Kdm7a
Uhmk1
Fermt2
Pfn1
Eno3
Malsu1
Klf9
Zeb1
Rabgef1
Sra1
Hdlbp
Saraf
Eprs
Atf3
Hexim2
Ddx39b
Por
Zfc3h1
Thap2
Csnk1a1
H4c1
H3c1
H1f1
Zfp1
Arf4
Tpp2
Ube2j1
Rasa3
Arih1
Alyref2
Sesn2
Cul1
Coro1c
Zfp655
Cry2
Rps6
Ppard
Ifi211
Rnf10
Tcf25
Pak2
Lpp
Dock9
Ercc5
Ndel1
Hspa4
Pafah1b2
Zmat1
Sik3
Slc25a5
Nptn
Eif2s2
H1f4
Gsto1
B3gnt2
Irf2bp2
Tubb6
Rybp
Calm2
Nars
Aven
Rbm3
Fgfr1
Pgap2
Nup98
Eif3c
Srrm2
Ankrd11
Sat1
Epc1
Flcn
Slc7a1
Aplp2
Nfil3
Selenok
Mlxip
H4c8
H3c8
H2ac10
Gls
Zc3h12a
Usp16
St7
Glul
Son
Gm36712
Gart
Rpl12
Lrsam1
Tmem87b
Pdha1
Gadd45b
Birc3
Phc2
Zfp330
H3c13
H2bc18
Zfp143
Pim3
Gpat4
Med21
Il6
Rps27rt
Rps27
Rab13
Cdc37l1
Fosl1
Rock2
Adrm1
Zswim6
Thbd
Cd44
Nr4a2
Enah
Baiap2
Hnrnpc
Rab21
Rpl19
Cacnb1
Pik3r1
Hmga2
Rpl22l1
Xrcc4
Tmem167
Hmgcr
Bclaf1
Lrrc58
Ptms
Rbbp6
Taf1d
4931406C07Rik
Zfp963
Rrn3
Lamp2
Dhrs9
Pcbp1
Rpl15
Nkiras1
Insig1
Myc
Plekho2
Mapk1
Mnt
Slc39a14
Pafah1b1
Rpsa
Prune2
Hnrnpdl
Enoph1
Fmc1
Uspl1
Cap1
Morc2a
Sipa1l1
Setd5
Adprh
Mapkapk2
Hsd17b12
Paxip1
Arf1
Slc7a5
Cd248
Igfbp7
Peak1
Hmg20a
Hexim1
Id4
Ubr5
Itprip
Rcn2
Taf4
Rpl17
Bcl7b
BC031181
Ccng1
Hnrnpa1
Cbx5
Wbp11
BC049715
Abracl
Angptl4
Wnk1
Tceal8
Ep300
Cst3
Arl2bp
Srxn1
Fasn
Twf1
Frs2
Agbl5
Pkm
Bri3
Pcf11
Pskh1
Nfkb2
Tnfaip2
Hsd17b7
Csf1
Rps12
Mob4
Cul3
Rsrp1
Zfp207
Kdm6b
Caprin1
Tspyl2
Slc9a1
Pcnp
Tnfrsf1b
Sertad1
Lox
Serbp1
Sipa1l2
Trp53inp1
Nrbp1
Rccd1
Pdcd6ip
Dot1l
Camk2d
Wdr26
Adpgk
Sugct
Mplkip
Tuba1b
Piezo1
Hnrnpa0
Rab22a
Hnrnpl
Kctd5
Brwd1
Ccnl2
Hnrnpa3
Ahctf1
Plec
Tax1bp1
Csde1
Serpinh1
Cldn12
Slbp
Rab43
Dhx9
D5Ertd579e
Bag3
H2bc4
H2ac6
Kif5b
Ets2
Elk4
Dcbld2
Ttpal
Cxcl5
Eif3a
Zbtb37
Arpc2
Fam76a
Wdfy1
Styxl1
Mdh2
Acyp2
Brd4
Mtch1
Usp53
Rpl38
Nufip2
Adnp
Arhgap23
Trip6
Ddx59
Eif4g1
Actn4
Tatdn2
Csrnp2
Mocs3
Dpm1
Rnf19a
Actn1
Zbtb16
Nsun6
Arl5b
Stk40
Tanc1
Nemf
Atp2a2
Socs3
Ccnt1
4930415O20Rik
Ctnna1
Txnrd1
Patl1
Mrpl33
Pdss2
Creb1
Zfp692
Cyth2
Itgav
Zfp568
Ddx50
Phlda1
Cpsf6
Cbx4
Arhgap10
H2bc3
H3c3
Oaz1
Exoc5
Ap5m1
Kctd18
Mpp7
Mbnl2
Plxdc1
Gars
H3f3a
Hspe1
Hspd1
Arl8a
Zfp706
Clk1
Zfp948
Rfx3
Ilf2
E4f1
Rpl24
Ppp1r15b
Net1
Heg1
Sp3
Crk
Trp53inp2
Map4k3
H2bc21
H2ac21
H2ac20
Rmi1
Hnrnpk
Arl8b
Rps10
Nrbf2
Zc3h15
Etnk1
Foxk1
Hmgb2
Ldha
Mthfd2
Bcl6
Pitrm1
Tpst2
Med14
Zcrb1
Pphln1
Chrac1
Pbld2
Hnrnph3
Tmem79
Smg5
Phf20l1
Dnaja2
Brd1
Nars2
Zfp866
Rab5if
Azin1
Skp1
Tyw1
Sbds
Mapre1
Ucp2
Strap
Atp6v0d1
Agrp
Ptpn23
Cbarp
Atp5d
Trim39
Rfx1
Axin1
Raph1
Cttnbp2nl
Mbd6
Ddit3
Rpl23
Slc5a5
Rpl18a
Il6st
Fkbp1a
Ppp2ca
Cul5
Ccny
Ndufs1
Eef1b2
Usp36
Helz2
Gmeb2
Ctdsp1
Znrf1
Twist2
A630095N17Rik
Dnajb2
Txnl1
Frmd6
Ccdc107
Tpcn2
Ddx17
Lims1
Rexo2
Eif4h
Map4k4
Unk
Vegfa
Gstp2
Gstp1
Fam53a
Usp7
Ube2d3
Lonp1
Catsperd
Knl1
Syap1
Relb
Tank
Bzw1
Anxa1
Zfp868
Srsf1
Cdr2l
Topors
Smim27
Rbm15b
Manf
Ptpn11
Pih1d1
Aldh16a1
Fndc3b
Osmr
Fau
Znhit2
Mrpl49
Psme3
Setd2
Yaf2
Polr2m
Luc7l2
Capza2
Atp13a3
Spag6
Ptx3
Tmed10
Rft1
Galnt2
Tm9sf3
Fscn1
Flnc
Med13
Alas1
Ccnyl1
Srrd
Hps4
Fdx1
Psmd14
Tnc
Mylip
Noct
Epc2
Rpl27a
Atxn2
Rhoc
Usp32
Csnk1g2
Rab8a
Ap1g1
Slc10a7
Rbmxl1
Pcna
Cnbp
Fbxo4
Utp4
Derpc
Chtf8
Tm9sf4
Ssu72
Trim24
Midn
Slc25a33
Npm1
Hmgn1
Snapc1
Tgfbr3
Fam133b
Dusp11
Vamp2
Smad1
Cops3
Rnf111
Vapa
Plin4
Map3k20
Pdcl3
Zc3h6
Cct8
Seh1l
4930453N24Rik
Rrbp1
Hmgxb3
Khdc4
Zfr
Per1
Nsd3
Letm2
Rps3a1
Pigl
Ncor1
Jpt1
Rplp1
Vps37a
Cnot7
Aen
Tmem120a
Chuk
Slc20a1
Cebpg
Myo1e
Susd6
Nedd9
Kpna1
Bcl2l13
Ythdf3
Atl2
Anxa5
1810062G17Rik
Pom121
Mrps18a
Mpc2
Dcaf6
Arpc1b
Atp6v1h
Hnrnpll
Zrsr2
Pdrg1
Pja2
Abl1
Map2k2
Rabepk
H4c6
H1f3
Nsrp1
Eif4ebp1
Pdp1
Lgr4
Arf3
Twsg1
H3c7
H2bc9
Dynll1
Ube2d2a
Rabgap1
Gpatch2l
Birc6
Tle4
Steap2
Zbtb24
Tmsb10
H1f0
Gcat
Rab1a
Hnrnpm
Rps23
Gtf2a2
Med13l
Lamc1
G3bp1
Rraga
Nrip1
Map1lc3a
Bdnf
D8Ertd738e
Acbd3
Ptpn6
Grcc10
Gnai3
Rps28
Rnf214
Pcsk7
Atl3
Slc35e1
Rab14
Zfp281
Cdc42ep4
H1f2
Aacs
Arl15
Stk24
Ube2w
Gtf2b
Lin7c
Wls
Atxn7l3b
Rbbp7
Trim7
Dnm1l
Lmod1
Pnp
Neurl4
2810408A11Rik