ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9144816 | 3T3-L1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◣ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

H4f16
H2aj
H4c3
H1f6
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
H4c14
H2bc6
Cxcl1
H4c4
H3c15
H3c14
H2ac19
H2ac18
H1f2
H4c17
H1f4
Cwc22
Slc35e3
Slc35g3
Polr2a
H3f3b
H2bc12
H4c9
H2bc11
H2ac11
H4c8
H3c8
H2ac10
Mt1
Fth1
Tex14
H3c11
H2bc22
H2ac22
H1f5
H3c13
H2bc18
Eif1
Mdm2
Cxcl5
Adamts1
Tsc22d1
Ftl1
Txnip
H2bc21
H2ac21
H2ac20
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Yeats4
Atf4
Mat2a
Slc38a2
H4c2
H3c2
H4c1
Cldn34d
Actb
Zfp36l1
Ubc
Ppp1r10
Mrps18b
H4c6
H1f3
Herpud1
Nfkbia
Ddx5
Cep95
Sqstm1
Eef1a1
Tuba1a
Gadd45a
Ubb
Pnrc1
Poldip3
Ppp1r12a
H2bc4
H2ac6
Ddit4
Eapp
Selenop
Unk
Hmgb2
H3c10
H2bc13
H2ac13
H2bc14
Cited2
H3c6
Vim
Zfp36l2
Gtf3c6
Hnrnpa2b1
Cbx3
Mt2
Clec2d
Btg1
Slc39a10
Sp1
Col1a2
Tti2
Nup62
Il4i1b
Atf5
H4c12
H2bc15
H2ac15
Kmt5b
Fam43a
H2ac4
Efcab2
Eif4a2
Gm3448
Gm3417
Tcte3
Ermard
Junb
Ints6
Chac1
Tob1
Ccl2
Srsf3
Srsf6
H1f0
Gcat
Gfpt1
Taf12
Serinc3
Calm2
H4c11
Pcbp1
Smim10l1
Zfp655
Ptms
Ddx3x
Slc25a4
Sned1
Fam53c
Sp3
Ccl7
Rpl3
Cdkn1a
Nsd3
Letm2
Slc3a2
S100a6
S100a5
B2m
Tmsb10
Col1a1
Gem
Sirt4
Tuba1b
Uspl1
Zfand5
Itm2b
Gpx1
Taf4
Ptp4a1
Ctnnb1
Casd1
Calm1
Znfx1
Atp6v0c
Amdhd2
Csf1
Irf1
Rnf103
Ier3
Flot1
Prdx1
Insig1
Arf6
Klf7
Cebpd
Raly
Epc1
Mgst1
Mbd6
Ddit3
Pcif1
Klhl24
Klf6
9530077C05Rik
Anln
Lrrc58
Sik1
Trib3
Resf1
BC005537
Map1lc3b
Amn1
Zfp1
Jund
Iqcn
Rhob
Angptl4
Pdk4
Hnrnpu
Zc3h6
Dglucy
Acadl
Ulk2
Ctsl
Crebrf
Rbm39
Fn1
Phlda3
Dennd6a
Hmgn2
Nfe2l2
Glul
Plk2
Tut7
Hmox1
Hsp90ab1
Sec62
Arl15
Nfat5
Gstp2
Gstp1
Poglut3
H2ac12
Paip2
Son
Gm36712
Gart
Cdc42
Cebpb
Ppp1r2
Trmt10c
Hspa5
Btg2
Urgcp
Frs2
Zfp963
Psap
Oser1
Napepld
Mmp2
Uap1l1
Srsf2
Mfsd11
Hexim2
Sun2
Retreg2
Cnppd1
Mif
Arhgap12
Eif5
Rap1b
Notch2
Gpr19
Rplp0
Fstl1
Acyp2
Baz2b
Tmem140
Ptpn6
Grcc10
Pim3
Gars
Trp53inp1
Alyref2
Zfp207
Slc5a3
Mrps6
Arrdc3
Mak16
4931414P19Rik
Slc43a2
Rsrp1
Ccni
2010109A12Rik
Ptpmt1
Sppl2a
Agbl3
Litaf
Plin2
Ccng2
Stag1
Pck2
Odc1
Pot1a
Apc
Dpy19l4
Eif3a
Eif3e
Dnajb4
Tmem107
Fubp1
Asah2
Ep300
C3
Tmem168
Nup107
Tmem128
Ptma
H3c1
H1f1
Adnp2
S100a10
Ppia
Eci1
Gsn
Gxylt2
Morf4l1
Kctd20
Rpl5
Cdkn2b
Stat3
Rdh14
Nde1
Marf1
Cxcl12
Flcn
AW549877
Gabarapl1
Mrps18a
Rmnd5a
F3
Dynlt1b
Actg1
Baiap2
Dynll1
Matr3
Tmem209
Ssmem1
Rbms1
Pole4
Plpp3
Prrc2a
Sugp1
Mau2
Rgs2
Tm9sf3
Epc2
Ak3
Zfp236
Prdm5
Pdcd4
Asns
St7
Cebpg
Hexim1
Wtap
Fbxo4
H2ax
1810013L24Rik
Cct2
Aven
H2aw
Mmp11
Chchd10
Timp2
Clk1
Zscan25
Hipk3
Nsrp1
Luc7l2
Osr2
Bach1
Samd9l
LOC547349
H2-L
H2-D1
Kctd5
Ahnak
Trmt44
Hbp1
Mknk2
Hmgn1
Tm2d1
Pkn1
Ppp1ccb
Ppp1cc
Rab43
Dusp10
1700056E22Rik
Rfc4
Hnrnph1
Zfp605
Gtpbp6
Hspa8
Thbs1
Piezo1
Ddx19b
Aars
Atxn7l3b
Klf11
Kntc1
Fnip1
Slc6a6
Pyurf
Slc18a1
Atp6v1b2
Ywhag
Mob1a
Rab5a
Pan3
Tbc1d5
Zfp62
Mansc4
Klhl42
Kmt2e
Pnp
Fam227b
Dtwd1
Cltc
Trim35
Tbrg4
Krcc1
Pigt
Rbm14
Gm21992
Clk4
BC049762
Gadd45gip1
Pigv
Arrdc2
Rpl17
Cald1
Nagk
Lyplal1
Rmdn2
Sptan1
Usp53
Pcmtd1
Patj
Tnfsfm13
Tnfsf12
Pkd1
Lrp6
Uhrf2
Neurl2
Ctsa
Retsat
Elmod3
Fbxl3
Cpsf6
Gng12
Fam122a
H2-DMa
Brd2
Gls
Rrn3
Polg2
Usp34
Thbs3
Mtx1
Lcmt2
Adal
Lox
Hnrnpf
Ncoa5
Pdpk1
Col3a1
Sde2
Mbnl1
Cul1
Arhgdia
Mos
Hspa9
Ghr
Cplane1
Zbtb44
Sppl3
Phkb
Itfg1
Cox20
Serinc1
Fus
Adprh
Twf1
Mllt10
Tmem223
Tmem179b
Tbc1d13
Pdf
Nop2
Ifi211
Trim39
Tax1bp1
Emc7
Wsb1
Mterf1b
Guf1
Bbs2
Pura
Mtg2
Mia2
Zfhx3
Csnk1a1
Rpl24
Thap1
Tceanc
Parva
Yap1
Vps36
Amacr
Bdnf
Zdhhc21
Zfp69
Zfp143
Hnrnpa1
Cbx5
Ddx39b
Gsto1
Zfp637
Atf1
Copb1
Dazap2
Zfyve1
Arhgef7
Ptn
Tbl1xr1
Chic2
Crbn
Zbtb38
Atp6v1h
Cd63
Ddhd2
Mdfic
Zfp868
Rps12
Add3
Pggt1b
Cdkn1b
Nabp1
Zfp866
Eif4ebp1
Mrpl2
Klc4
Cul7
Kctd18
Dync1li2
Rab11fip2
Mkln1
Hhat
Ywhaz
Ndfip1
Atp5g3
Slc7a5
Ptrhd1
Cenpo
Rufy1
Adnp
Arl14ep
Usp16
Seh1l
4930453N24Rik
Lrrc61
Atp23
Spg11
Rnh1
Hnrnpll
Ncoa3
Heatr4
Acot2
Hexa
Gpr85
Acbd5
Adam10
9030025P20Rik
Ctdsp1
Smim14
Pcmtd2
Rpl39
Hsp90aa1
Irs2
Pafah1b2
Sem1
Asap1
Tet3
Atp6v1e1
Rbm33
Zfp119a
Rchy1
Hdhd2
Ing3
Gng11
Gpx4
Pafah1b1
Camk2d
Lin7c
Poglut1
Stat6
C330018D20Rik
Cdkn2a
Nfkbiz
Zfp869
Malsu1
Susd6
Kdm3a
Tomt
Lamtor1
Kdm5b
Rprd2
Ltbr
Mmadhc
Smad1
Slc5a6
Atraid
D8Ertd738e
Kiz
Ankrd12
Itgb1
Birc2
Ube2l3
Sft2d3
Rpl15
Nkiras1
Tbc1d10c
Ppp1ca
Ccnl1
Rps20
Rab7
Ube2d3
Siah1a
Setd1b
Cat
Pdgfrb
Map2k2
Sod1
Mocs3
Dpm1
Ddx6
Gm10130
Tmem125
Nrbp1
Mios
Prkag1
Vamp8
Ccdc9b
Tra2a
Taok1
Ube2b
Cdkl3
Kpna2
Ubxn8
Ppfibp1
Cul5
Zc3h15
Pum2
Zfr
Spata1
Gng5
Itfg2
Rmi1
Hnrnpk
Nptn
Usp38
Tasor
Sf3b4
Rpl32
4833420G17Rik
Plin4
Parp11
Rad52
Wwp2
Sdc4
Btaf1
Ube2v2
Nedd4
Manbal
Tubg1
Retreg3
Zfp248
Mxd4
Insr
Tmem106b
Chchd2
Nfyc
Tomm34
Stk4
Nrf1
Hlcs
Tmem165
Lamp2
Mrpl40
Hira
Tmem134
Aip
Gpd2
Pccb
Gm20346
Anp32a
Polr2m
Mmaa
Haus1
Atp5a1
Il6ra
Atxn7l2
Ifi27
Trdmt1
Rbm12
Cpne1
Golga1
Mrpl53
Abcc1
Camkk2
Calr
Aasdh
Vps37a
Cnot7
Pank2
Snx13
Pabpc1
Raf1
Selenot
Rnf10
Tmem39a
Trmt10a
Mttp
Strap
Mrps35
Fbxw11
Pet117
Kat14
Spred1
Zbed3
Ahnak2
Egf
Gpr137b
Gtdc1
Ubr2
Nsd1
Btbd3
Ppp1r15a
Plekha4
Pkm
Tmf1
Ccnl2
Zfp638
Mettl26
Scaf11
Bpnt2
Nudt3
Nsun3
Relb
Ero1a
Zmat1
Il6st
Ankrd37
Maea
Ppp1r3c
Kbtbd3
Fcho2
Id1
Chka
Rab22a
Sgo1
Atxn2
Gpr155
Usp24
Anapc4
Wdr19
Slc25a24
Zeb2
Wnk1
Dusp11
Washc4
Hnrnpdl
Enoph1
Ddx17
Cnot6
Eif4g2
Ier5l
Mob1b
Ghitm
Chd4
Egln2
Tcp11l2
Ncl
Txn1
Ubald1
Nubp1
Rbbp6
Zc3h4
Nuak1
Pih1d1
Aldh16a1
Thbs2
Washc1
Setd7
Zfp507
Tubb4b
Brpf3
Rnf111
Cdk9
Gnb2
Slc35a3
Rhot2
Wasf2
Gm3435
Hnrnpa3
Zfp959
Zmym2
Ccdc91
Prss23
Lig3
Obi1
Msl1
Bmf
Kdm6b
Eif3d
Gtf2i
Tigd2
Rtkn
Sdccag8
Cep170
Prrx2
Ier2
Gtf2b
Rps8
Arl8b
Kat6a
Arcn1
Pskh1
Ints5
1810009A15Rik
Champ1
Rnf146
Lbhd1
Metap1d
Sf1
Sox9
Stk35
Tnks2
Cep295
Smo
Eif3c
Timm44
Srd5a3
Patl1
Galnt11
Sltm
Dync1h1
Plekhm3
Tmem175
Gak
Psmd5
Cutal
Fnta
D2hgdh
Tbc1d9b
Zfp326
Uba6
Tmem192
Hdac4
Erbin
Adamts5
Dnaja1
Ptpn2
Sars
Wdr4
Topbp1
Spag6
Spaca6
Tpk1
Crot
Gnb1l
Atp6v1g1
Vamp5
Lbh
Pten
Rab33b
Nars
Eif2s2
Kdm5a
Fam13b
C1d
Tmem17
Anxa2
Zfp874b
Gbp2
H3f3a
Pradc1
Cct7
Dguok
Micu2
Zfp319
Usb1
Washc2
Exoc3
Msl2
Bcl2l2
Eef2
Uhmk1
Degs1
Hilpda
Otub1
Gabpb1
Camk1
Ifnar2
Lmo4
Troap
Zfp266
Il1rl2
Spg21
Srsf1
Zfp213
Slf2
Slc38a7
Nanp
Ezh1
Bnip3l
Becn1
Hnrnpab
Caprin1
Tgfbr3
Ubap2l
4933434E20Rik
Suz12
Memo1
Sema4c
Zdhhc17
Asl
Crcp
Polb
Scmh1
Sgk1
Tmsb4x
Tyw1
Sbds
Snai1
Tvp23b
Net1
Ifi204
Lmna
Ddx59
Ccdc107
Rbm7
Gm5617
Sfr1
Rnf14
Rnf6
Aldh3a2
Rb1cc1
Rnf114
Klhdc10
Zfp397
Lyrm7
Mthfd1
Ntpcr
Gtf2a1
Cct8
Ywhaq
Fgfr1
Ttc17
Cpt1b
Chkb
Serpinb6a
Cops7a
Ociad1
Slc25a36
Nub1
Atf2
Ptar1
Yipf4
Atp5j2
Tlr3
Tuba1c
Pcmt1
Lonp1
Catsperd
Lats1
Vgll4
Shisa4
Ctdsp2
Bhlhe41
Traf2
Colca2
Chrac1
Phf23
Pomp
Gabarap
Tor1aip2
Tor1aip1
Dyrk1a
Xrcc4
Tmem167
Il10rb
Tbcc
Vegfb
Dnajc4
Rab24
Prelid1
Mtf2
Rfx3
Crebl2
Mylip
Bcl2l13