ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620287 | NIH/3T3
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◣ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Sspn
Il31ra
Kpna1
Pgk1
Dchs2
Errfi1
Cldn34d
Egr1
Ccn1
Actg1
Thbs1
Serpine1
Actb
Ccn2
Plk2
Tmem125
Ubc
Abhd6
Olfr806
Ptgs2
Dusp1
Nr4a1
F3
Dusp5
Flnc
Ifna13
Fos
Vim
Vmn2r4
Lox
Phlda1
Gm13285
Gm13290
Gm13289
Gm13287
Gm13288
Ier5
Wwox
Gadd45g
Sgk1
Ifrd1
Aadacl2fm1
Zfp598
Msmo1
Dcaf5
Fn1
Btg2
Ier2
Prkca
Zc3h6
Ier3
Flot1
Id3
Trib1
Acta2
H3f3b
Fosl2
Junb
Frmd6
Csf1
Zfand5
Myh9
Id1
Cuedc1
Oasl1
Itga5
Vcl
Ccnl1
Eif1
Ddx1
Syn2
Plcb1
Jun
Cdca7
Mt2
Klf6
Hmgcr
Rnft1
Tob1
Actr3
Lbh
Mmaa
Mat2a
Flad1
Ube2b
Cdkl3
Trim50
Dnajb4
Fubp1
Mcl1
Tpm1
Esyt2
Camk2d
Rheb
Ncbp2
0610012G03Rik
Tubb6
Rel
Cdkn2aipnl
Fer
Atf4
Sf3b1
Nrbp1
Uhrf1bp1l
Itgb1
Mtdh
H3c15
H3c14
H2ac19
H2ac18
Mideas
Sfi1
Egr2
Gm13275
Gm13279
Gm13278
Arpc2
Egr3
Palld
Noct
Rps6
Rraga
Ttc4
Gm13272
Klf7
Rnf11
Ahnak
Tle1
Ccdc88a
Mtf2
Ankrd40
Kansl2
Gm3448
Gm3417
9030025P20Rik
Prl2c2
Prss23
Tnfrsf12a
Thoc6
Hcfc1r1
Cldn6
Taf1d
4931406C07Rik
Cltc
Calm2
S100a6
S100a5
Rtn4
Epb41l2
Arc
Phlda3
Dgat1
Mterf1b
Wtip
Cartpt
Lmna
Cldn12
Tnc
Tjp2
Zscan21
Jmjd1c
Gm3435
Mterf1a
Slc35g3
Polr2a
H4f16
H2aj
Tex14
H4bc24
H2bc23
H2ac24
H2ac23
H4c3
H1f6
H4c18
H4c14
H2bc6
Cxcl1
Cwc22
Ddx5
Cep95
H4c4
Mt1
H1f2
Jund
Iqcn
Csf2ra
Fth1
H3c6
Eef1a1
H3c11
H2bc22
H2ac22
Hnrnpa2b1
Cbx3
Eapp
Ube2a
Eif4a2
H1f4
H1f5
H3c13
H2bc18
Ppp1r10
Mrps18b
H2bc12
Fyco1
H4c17
Arf6
Hspa5
Hspa8
Rpl3
Btg1
Nfkbia
Tsc22d1
Nemf
H4c8
H3c8
H2ac10
Taf12
Ubb
Ppia
Slc35e3
Zfp143
Ctnnb1
Nabp1
Poldip3
H4c9
H2bc11
H2ac11
H2bc21
H2ac21
H2ac20
Ftl1
Fam53c
Raly
Mdm2
H4c2
Gtf3c6
Ddit4
Cited2
H3c2
Sp1
Fam227b
Dtwd1
Srsf2
Mfsd11
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Adamts1
Zyx
Calm1
Chac1
Tmem267
H3c10
Zfp36l1
Fus
Cdkn1a
Slc38a2
Rplp0
Sdc4
Cebpd
H2bc13
H2ac13
H4c6
H1f3
Sqstm1
Cdh12
H2ac4
Tcte3
Sirt4
Ermard
Herpud1
Cebpb
Nfkbiz
Cirbp
Pnrc1
Tpt1
Unk
BC005537
Ppp1r12a
Rps29
Lima1
Prdx1
H2bc14
Txnip
H4c1
Zfp36l2
Clcn4
Znfx1
Pcif1
Scrib
Ulk2
Tuba1c
Clec2d
Calcoco1
Yeats4
Srsf5
Fam174c
Odc1
Ptp4a1
Efcab2
Tuba1a
Tmem107
Sik1
Rbm39
Nfat5
H2ax
Srsf6
Rgs2
H2-DMa
Eef2
Brd2
Dnaja1
Srsf3
Litaf
H2bc4
H2ac6
Pcbp1
Hsp90aa1
Rps20
Dnajb1
Ddx3x
Slc25a4
Uspl1
Ap1g1
Tuba1b
Slc3a2
Vmn2r102
Hnrnpu
Ywhaz
Tiparp
H4c11
Hsp90ab1
Ints6
Serinc3
Tti2
Myl12a
B2m
Epc1
Cdc42
Nup62
Il4i1b
Atf5
Rhob
Hnrnph1
Tmem123
Timp2
Ccl7
Banp
Ddx23
Gpx1
Zfp869
Rptor
Ccl2
Eif5
1810013L24Rik
Tra2a
Snx17
Eif2b4
Hexim2
Gtf2b
Zfp36
Kmt2e
Taf4
LOC547349
Hnrnpab
9430015G10Rik
Setd5
Cnot1
H3c1
H1f1
H3c7
H2bc9
Dync1i2
Mrpl44
Insig1
Cdk12
Eif4a1
H4c12
H2bc15
H2ac15
Rap1b
Selenop
Dstn
Stat3
Pabpc1
Larp4
Ncl
Amn1
Kntc1
Emd
Zfp963
Col1a1
Pole4
Pdlim5
Napepld
Sde2
Rsrp1
Phf12
Tmsb4x
H2-L
H2-D1
Hmgb2
Smim10l1
Tmed2
Zfp1
Aaas
Gapdh
Scaf1
Rras
Nfe2l2
Hif1a
H2bc3
Mbd6
Ddit3
Chmp4b
Resf1
Crem
Urgcp
H2ac12
Ep400
Ppp1r15a
Plekha4
Ndufs7
Retsat
Elmod3
Mknk2
Coq10b
Zfp655
Wsb1
Irf1
Hmox1
Pkd1
Prcc
Zfp868
Cxcl5
Atp6v0c
Tmsb10
Trib3
Rdm1
Gem
Slc25a3
Wnk1
H1f0
Gcat
Rps12
Ptms
Kmt5b
Cfl1
Tob2
Gls
Ppp1r2
Eif3a
Eif3c
Zbtb37
Pdss2
Tra2b
Pdlim7
Sptan1
Rpl10a
Glul
Slc9a1
Klf2
Fstl1
Slbp
Opa1
Adnp
Son
Gm36712
Gart
Ctsl
Pprc1
Nufip2
Arrdc2
Rabgef1
Rnf19b
Atp2a2
Snx5
Mgme1
Eif4g2
Mettl25
Ccdc59
Ldha
Usp48
Map2k2
Ywhag
Tmem168
Csrnp2
Srsf1
Raf1
Bach1
Ptpn2
Chchd2
Map1lc3b
Sec61a1
Hnrnpa1
Cbx5
Birc2
Csnk1a1
Ptpn6
Grcc10
H2-K1
Morf4l1
Sp3
Ndel1
Copz1
Ptma
G3bp1
Baiap2
Cpeb2
Chrac1
Cpsf1
Gtf2a1
Calr
Zfp866
Piezo1
Slc2a1
Sod1
Homer1
Trp53rkb
Ddx39b
Rock2
Kctd5
Arntl
Nsd3
Letm2
Phf23
Pcna
Zc3h10
Rpl41
Ugdh
Gsto1
Gadd45a
Txnl1
Mbnl1
9530077C05Rik
Plekhg2
Dynll1
Zfp207
Ets2
Pim3
Sub1
H3c3
Arl14ep
Adprh
Arih1
Taf13
Slc39a10
Hipk3
Ubxn1
Nedd8
Gmpr2
Aff4
Hmgn2
Pbld2
Hnrnph3
Nfyc
Top1
Selenot
Txn1
Wbp4
Elf1
Eif2b5
Sepsecs
Pcnp
Sppl2a
Vegfa
Fasn
Galk2
Sned1
Cops2
Adnp2
Hdlbp
Col4a2
Eif4e2
Slc5a3
Mrps6
Gabpb2
Zfp637
Tmem175
Plxdc1
Gak
Rab5if
Lrrc8a
Vdr
Nsrp1
Rpl9
Lias
Hnrnpa3
Prrc2a
Parva
Dusp2
Astl
Gadd45b
S100a10
Rab11b
Gstp2
Dapk3
Tent5c
Sf1
Ddx59
Npm1
Mmadhc
Sik2
Rnf10
Ep300
Ifi211
Ubald1
Rmi1
Rab1a
Hnrnpk
Phb
Gpx4
Rps8
Pknox1
Ppm1a
Rrn3
Rps3a1
Tubb4b
Rfx3
Pkm
Atp6v1h
Cct8
Chmp6
Ranbp2
Rpl17
P4ha1
Hspa4
Ap2m1
Ndfip1
Mtg1
Btaf1
Rabl6
Ccng1
Tut7
Polr2m
Eci1
Ppp6c
Pnp
Sharpin
Maf1
Gm35339
Htra2
Dqx1
Dpy19l4
Aup1
Fam43a
Cct2
Spindoc
5730455P16Rik
Oat
Tomm34
Stk4
Cox20
Gars
Rbks
Psmd7
Clk1
Babam2
Lrif1
Paxip1
Tcf25
Gmfb
Brwd1
Arl8b
Arf4
Ufl1
Tle3
Plec
Angptl4
Puf60
Pafah1b1
Rps27rt
Rps27
Rab13
Jak1
Fbxl3
Tbcd
Rab7
Rfc4
Wdr70
Hexim1
Dcp1a
Cap1
Calu
Kat7
Atf1
Aacs
Slc25a32
Dcaf13
Uhmk1
Tkfc
Ddb1
Zcwpw2
Azi2
Ndufs4
Ankrd11
Pigl
Ncor1
Nop14
Grk4
Filip1l
Ywhae
Elk4
Anln
Mrpl19
Jpt1
Rdh14
Dusp11
Adpgk
Ube2j2
Arl15
Irs2
Flcn
Trmt44
Gstp1
Cul1
Pigq
Nhlrc4
Rpl5
Srrm2
Luc7l
Fosb
Ctdp1
Chka
Trmo
Tmem79
Socs3
Smg5
Hspa9
Secisbp2l
Pten
Kdm6b
Fem1b
H3f3a
Sec62
Phf20l1
Notch2
Knl1
Tmem87b
Rab33b
S1pr4
Ncln
Tm9sf3
Crebl2
Cct4
Caprin1
Stau1
Prnp
Prn
Ppp1ccb
Ppp1cc
Cotl1
Amdhd2
Nubp1
N4bp2l2
Mrpl39
Hmgn1
Gm13277
Trir
Get3
Lrp6
Gpr84
Tsnaxip1
Sox9
Rnf34
Ranbp10
Cnbp
Serbp1
Rprd2
Rplp1
Ccnt1
4930415O20Rik
Ube2h
Saraf
Aven
Ttc41
Hsp90b1
Lrrc59
Ube2d3
Crtc2
Nrf1
Relb
Anapc5
Ing1
Tab1
Ndufa9
Akap3
Sun2
Fscn1
Pdia3
Ndufaf5
Esf1
Ero1a
Catsper2
Snx18
Fitm2
Usp53
Tbc1d13
Rpl38
Prkar1a
Kat6a
Twf1
Klhl24
Atf6
Ilf2
Cald1
Nme1
Atp5g2
Rabggtb
Pitpna
Atg10
Rbl2
Nptn
Alyref2
Zdhhc1
Gas1
Fbxl18
Gmeb2
Plekho2
Ppp2cb
Sugct
Mplkip
Atp5g3
Lgals1
Zfp706
Gnas
Tpm4
Pcmt1
Pex14
Ube2z
Bcl7b
Atp5o
Aff1
Copb1
Rubcn
Dnajb12
Zfp644
Rad54l2
Ier5l
Nsfl1c
Nde1
Marf1
Map2k4
Ddx19b
Trdmt1
Pdcd7
Tada3
Rpl23
Arpc4
Washc4
Rbm3
G3bp2
Mapkbp1
Eprs
Adrm1
Arl4d
Hnrnpdl
Enoph1
Arcn1
Kif2c
Med6
Birc6
Cd164
Mthfd2
Arf1
Serinc1
Zswim6
Ndufb8
Rpl13
Mylip
Slc16a1
Rbbp6
Arl2bp
Malsu1
Peli1
Tmem248
Cpsf6
Rgl1
Arpc5
Ube3b
Rbm33
Kctd10
Mapk1ip1l
Gspt1
Ankrd17
Smg8
Rcn2
Zc3h11a
Zbed6
St3gal2
Dennd6a
Ndufs3
Kbtbd4
Srp19
Gatb
Dip2b
Usp16
Pafah1b2
Zmat1
Pomp
Bclaf1
Drg2
Tmem88
Krr1
Hnrnpc
Degs1
Rab21
Polg2
Ccdc107
Nagk
Ube2l3
Pskh1
Slc12a4
Trim39
Tmf1
Nsun6
Arl5b
AW549877
Slc7a1
Csgalnact2
Terf2
Zfp119b
Tpp2
Ube2g1
Kpnb1
Get4
Vamp2
Susd6
Rbm17
Lonp1
Catsperd
Oaz1
E4f1
Gabarap
Mapk1
Csrnp1
Lnpep
Vdac2
Ifrd2
Pdk4
Ddx17
Kmt2d
Wtap
Etf1
Aasdh
Smad1
Snrpd3
Niban2
Gucd1
Cd248
Snrpc
Golph3
Enc1
Frs2
Mff
Dhx33
Lrrc58
Btrc
Usp38
Tmem39a
Map3k6
Ell2
Tardbp
Creb1
Birc3
Rpl22l1
Txndc11
Bud13
Matr3
Ppp2r3a
Cstf3
Ahctf1
Srcap
Lcn2
Dnajc16
Casp9
Bcl2l13
Sft2d3
Slc7a5
Trp53inp1
Rab43
Pigu
Srek1
Ube2v2
Hnrnpm
Sec22b
Rbm14
Gm21992
N6amt1
Mmp2
Ints5
Slc5a5
Rpl18a
1810009A15Rik
Ppp2ca
Klhl17