ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX735282 | Unclassified
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◣ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Il31ra
Kpna1
Cldn34d
Fyco1
Chac1
Calcoco1
Ddx23
9430015G10Rik
Abhd6
Tmem125
Scrib
Olfr806
Phf12
Dchs2
Sspn
Cotl1
Prcc
Csf2ra
Nr4a1
Crtc2
Fbxl18
Nop14
Grk4
Pprc1
Kif2c
S1pr4
Ncln
Dusp2
Astl
Ap2m1
Usp48
Hsph1
Hspa5
Sharpin
Maf1
Gm35339
Vmn2r4
Htra2
Dqx1
Aup1
Banp
Ccl1
Tnf
Lta
Mrpl19
Dync1i2
Usp5
Cdca3
Snx17
Eif2b4
Dhx33
Clpb
Phlda1
Mtg1
Proser1
Nhlrc3
Btbd19
Phb
Fastkd1
Ifna13
Wwox
Chmp4b
Unk
Tmed2
Psat1
Arl14ep
Il2
Krr1
Ifrd2
Aadacl2fm1
Rptor
Mrpl44
Cpsf1
Tmem88
Naa38
Cyb5d1
Nedd8
Gmpr2
Tmem101
B4galt7
Nabp1
Trp53rkb
Rcc1l
Wdr70
Dffb
Cep104
St3gal2
Clptm1l
Pex14
Cnot1
Mrpl39
Sphk2
Rpl18
Fam83e
Chchd6
Rpl3
Sepsecs
Tmem107
Mrpl12
Timm13
Phf20l1
Atp5o
Rpia
Klhl17
Prmt6
C87436
Ap1g1
Gtf3c6
Nprl2
Cyb561d2
Bicd2
Sympk
Foxa3
Hspa8
5730455P16Rik
Cwc22
Poldip3
N4bp2l2
Stk25
Btrc
Slc35b4
Actr10
Opa1
Max
Alkbh8
Eapp
Plaa
Herpud1
Med6
Pigq
Nhlrc4
Mmachc
Ccdc163
Chmp6
Rdh14
H4c14
Gatb
Vrk1
Atf6
R3hcc1l
Ndufc2
Ankle2
Jak2
Odc1
Pigu
Rel
Phf13
Nup153
Frg2f1
Foxj3
Mrpl20
Zfyve19
Dnajc17
Ncbp2
0610012G03Rik
Trip4
Usp31
Mrpl1
Ssrp1
P2rx3
Ormdl3
Zfp369
Scaf1
Rras
Tbcd
Ube3c
Zfp189
Mrpl50
Katnal1
Trib3
Tmem115
Smarca4
Tex14
Dcp1a
Crebl2
Gsk3a
Guf1
Secisbp2
Prr5l
Commd9
Ap5s1
Ctu1
Fam227b
Dtwd1
Cdh12
Rbl2
Tyw3
Cryz
Sec61a1
Mapkapk5
Pemt
Eef1a1
Nme1
Mrpl21
Ighmbp2
Celf2
Mff
Acp2
Invs
Erp44
Dexi
Clec16a
Pfdn5
Atg9b
Abcb8
Zfp637
Slc7a11
Kmt2d
Tmem214
Dcps
Ube2j2
Atg101
Vmn2r102
Wdr36
Marchf5
Cpeb3
Ptp4a2
Rps20
Tmed9
Zfp36l1
Capn15
Psmd7
Snx27
Cstf1
Aurka
Ccp110
Tcof1
Lrrc59
Tspan4
Polr2l
Tmem267
Map1lc3b
Gid4
Rsad1
Rabac1
Stau1
Med27
Rexo2
Rad23b
Dus1l
Wdr25
Wars
Ppp2r5b
Srp19
Uqcrh
Lrrc41
Pabpc1
Tent5c
Gtf3c3
Arid1a
H3c15
H3c14
H2ac19
H2ac18
Psmb2
Cnot2
Psmb5
Zbtb37
Pcbp1
Snw1
Dhx16
Mrps33
Ncbp3
Get1
Slc25a32
Dcaf13
Eefsec
Ndufb2
Vpreb1
Top3b
Mrm3
Glod4
Metrn
Antkmt
Nemf
Rhot1
Asns
Rpp30
Gtpbp2
Zmat5
Uqcr10
Tmem11
Dhrs7
Ddx47
Ccpg1os
Ccpg1
Cipc
Zfp729a
Naa15
Ctdp1
Brd3
H2ax
Cdkl4
Mcl1
Zc3hc1
Pde6d
Cops7b
Trmt44
Cep128
Ccdc77
Bub3
Srp68
Pcif1
Pten
Smg8
Rnf123
Mst1
Kbtbd7
Stpg3
Nelfb
Zfp870
Calm1
Peli1
Bud13
Rps21
Vps50
Hepacam2
Mrps15
Wnk1
Ptpn6
Grcc10
Tbrg1
2210016L21Rik
Stx18
Ubox5
Fastkd5
Map2k5
Pomp
Tmed10
Zar1l
Brca2
Nfkb1
Dnajc11
Shmt2
Ubxn1
Stx16
Poglut3
Agk
Taf5
Snrpd1
Cenps
Muc3
Mrps25
Mars1
Tsnaxip1
Ranbp10
Fra10ac1
H4c12
H2bc15
H2ac15
Aaas
Rab1a
Rabggtb
Klhdc4
Rbm17
Cdk9
Ythdf2
Tmem127
Ciao1
Gne
Wasf1
Cdc40
Ankrd46
Mfn2
Ccdc126
Terf2
Eif4ebp1
Pigg
Lcorl
Mettl15
Kif18a
Cnih4
Rab5c
H1f2
Gm3448
Gm3417
9030025P20Rik
BC107364
Scfd1
Tchp
Ptcd3
Polr1a
Fam53c
Ufl1
Cdkn2aipnl
Lars
Slc27a4
2700062C07Rik
Esr1
Fbxo15
Timm21
Ttc13
Arv1
Eif4a2
Sp1
Rabl6
Slc39a13
M6pr
Hnrnpa2b1
Cbx3
Ndufs4
Rad50
Gem
Lemd2
Clpp
Nbr1
Brca1
Nutf2
Ppih
Commd2
Pdcd1
Nfat5
Get4
Snrnp27
Cul2
Ep400
Trmo
Ube4a
Znrd1as
Znrd1
Iars
Inpp5b
Bcat1
Borcs7
Eps15
Rpl31
Rab30
Drg2
Bod1l
Cops8
Coq5
Exoc2
H2bc6
H1f4
Eif2b5
Kat7
Dnajc16
Casp9
Med4
Dpagt1
Kmt2e
Mettl25
Ccdc59
Yars
S100pbp
Srprb
Btg1
Tmem168
Mrps35
Bod1
9130401M01Rik
Naa60
Ifrd1
Dguok
Tmem43
Chchd4
Aurkaip1
Gtf2a1
Gfus
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
Zc3h6
Csnk1a1
Gmfb
Lancl2
Isy1
Rnf6
Ints4
Eif3g
1190007I07Rik
Rps6kb2
Sfi1
Spty2d1
Cops7a
Leng8
Prkacb
Tbck
Aimp1
Cdk5rap2
Prmt3
Sirt2
Nfkbib
Skp2
Lmbrd2
Pdia6
Srsf2
Mfsd11
Ulk2
Napepld
Nol10
Zfp691
Chpf2
Gm3435
Yars2
Btbd8
Dhx30
Dnajb9
Inpp5k
Abcf2
Rprd2
Tsfm
Gtf2h3
Eif2b1
Slc35a1
Eif2b3
H4c3
H1f6
Ccnl1
Atp5g2
Dnttip2
Dmap1
Sars
Cluh
Vta1
Taco1
Mphosph10
Mcee
Ints14
Pxk
Rbsn
Snapc3
2610001J05Rik
Psmd12
Vamp1
Trmt12
Ccn4
Man1b1
Aarsd1
Stim2
Fam219b
H2bc21
H2ac21
H2ac20
Polr2m
Dnajb12
Trdmt1
Ppp1r15b
Ncdn
AU040320
Cep120
Rps8
Nelfa
Trmt10a
Mttp
Smn1
Rps19bp1
Rnf220
Ttll11
Vcpkmt
Ogfr
Wdr61
Ciao3
Tspoap1
Atf4
Epc1
Retsat
Elmod3
Fam193a
Wdr4
Wbp2
Exo5
Zfp661
Mrps5
Cd274
Ahcyl1
Map3k4
Taf11
Anks1
Ldah
Cnot10
Cwc27
Thap4
Atg4b
Adam17
Nbas
Pdcd7
Rps27l
Oscar
Ndufa3
Vwa8
G3bp1
Togaram1
Klhl28
Trmt5
Slc38a6
Nop16
Higd2a
Zbtb17
Lrif1
Sec22b
Ptrhd1
Cenpo
Fbxw8
Mrps7
Gga3
Nup54
Nudt15
Rad1
Brix1
Mrpl58
Ptcd2
Mrps27
Pcbd2
Nmt1
Kif13b
H3c11
H2bc22
H2ac22
H1f5
Rfc4
Srrd
Hps4
Slc4a2
Cdk5
Zfp317
Zzef1
Cyb5d2
Zfp748
H4c4
Gspt1
Pex3
Adat2
Tut1
Zfp706
Kpnb1
Snrpc
Thrap3
Tmem94
Ints9
Hmbox1
Coa8
Bag5
Dph2
B4galt2
Atp6v0b
Taar7a
Taar6
Dmac1
Tob1
Arf6
Dgat1
Med7
Trpc4ap
Cd44
Rpl29
Zfp335
Prox2
Dlst
Ndufv1
Zbtb45
Jrk
Kcnt1
Actb
Taf12
Cited2
Gabpb2
Ppp6c
Taf1d
4931406C07Rik
Mtmr2
Slc33a1
Alg1
Bms1
Zfyve1
Tmem242
Ints3
Brf1
Zdhhc3
Exosc7
Mkrn3
Pa2g4
Mterf4
Ddost
Adck1
Nsrp1
Ndufb8
Zc3h4
Ubqln4
Lamtor2
Sfxn5
Uchl5
Ro60
Brpf1
Zbtb21
Gtf2f2
Abcc5
Zfp46
Fcmr
Mat2a
Znfx1
Tkfc
Ddb1
Ndufaf5
Esf1
Dcaf10
Scnm1
Lysmd1
Trak2
Prpf4
Cdc26
Cpox
H3c10
H2bc13
H2ac13
Tarbp2
Map3k12
Prmt5
Ndufa10
Zfp738
Ndc1
H4c9
H2bc11
H2ac11
Hnrnpab
Srsf1
P4hb
Wdr45b
Mpzl3
Brms1
B4gat1
Stc2
Tiparp
Ndfip1
Rbm33
Coq9
Ciapin1
Rpl27a
Haspin
Mtrex
Dhx29
Elp6
Nufip2
Cnot4
Tmem245
Tomm22
Gtf2b
Ndufs7
Rps27rt
Rps27
Rab13
Knl1
Slc16a1
Bcl2l13
Zbtb11
Hilpda
Bola3
Man2c1
Wdr59
Gas2
Rps12
Hnrnpa3
Atp6v1h
Rad18
Ube2v1
Tpgs1
Cdiptos
Cdipt
Madcam1
Foxk2
Zfp207
Ints5
1810009A15Rik
Gpn3
Fam216a
Rps24
Polr3a
Pnisr
Hacd2
Rdx
Ppp1r12c
Coq2
Vps4a
Idh3b
Fan1
Larp4
Adprh
Myc
Hus1
Mlst8
Ap2s1
Wdr34
Nudcd3
Ddx39b
Tab1
Ccnd3
Rps7
Mnat1
Napg
Atxn2l
Itpr1
Taf8
Dlg4
Acadvl
Lef1
H4f16
H2aj
Eif5
Ndufa9
Akap3
Med17
Timm44
Cacybp
Parp2
Chd1l
Sohlh1
Chka
Ube2d3
Kmt2a
Nsa2
Gfm2
Tbp
Psmb1
Dusp12
Rsl24d1
H4c11
H2bc3
H3c3
Eif4e2
Secisbp2l
Mthfd2
Rpl13
Usp16
Gbe1
Cox7a2
Clp1
Zcwpw2
Azi2
Dcaf5
Atxn1l
Nip7
Cog8
Atad5
Srfbp1
Acsf3
1110038F14Rik
Spink5
Gars
Cct4
Snx18
Ndufs3
Kbtbd4
Vdac2
Ankrd40
Chordc1
Dido1
Gid8
Zfp91
Lpxn
Klhdc2
Ddx56
Zfp740
Csad
Atxn7l2
Smim11
Pex11b
Snrnp200
1810024B03Rik
Tex2
Rabggta
Nek9
Rtn2
Coil
Rrp1b
Hsf2bp
Tubd1
Rps6kb1
Mycbp2
Iqsec3
H4c17
Galk2
Cops2
Pdia3
Catsper2
Zdhhc1
Snrpa1
Trim7
Rint1
Pus7
Lman2
Nmnat1
Lzic
Prkcsh
Ccdc151
Syt3
H2bc12
H2ac12
Pigl
Ncor1
Snrpd3
Gucd1
Psmc6
Nfil3
Sar1b
Tfeb
Edem2
Xpnpep3
St13
Sugt1
Ndufab1
Park7
Rbbp5
Mrps10
Mrpl42
Ipo11
Kmt5b
9530077C05Rik
Psmg3
Tmem262
Gosr1
Vps51
Sf3b2
Gal3st3
Jtb
C1qbp
Trub1
Tpr
Odr4
Slc39a9
Erh
H3c13
H2bc18
Sppl2a
Kansl2
Arid4b
Cwc25
Pafah2
Tsc22d2
Vcpip1
Heatr6
Cnot8
Rars2
Orc3
Txnrd2
Comt
Hinfp
Rbm48
Pex1
Tmem250-ps
Tonsl
Snrpf
Rbm39
Sde2
Egr2
Usp30
Tmem260
Kif5a
Dctn2
Usp35
Kctd21
Pou2af1
Speer4e
Mpi
Zfp143
Notch2
Rab33b
Sgms1
Taf2
Zhx1
Cdk8
Trmu
Stoml2
Gapdh
Mtf2
Pbld2
Hnrnph3
Tatdn3
Nsl1
Mrpl4
Cpped1
Zfp513
Rpl34-ps1
Rpl34
Ndufaf1
H3f3c
Apobec3
Psma1
Exd2
Camk4
Zfp383
Zfp27
Aasdh
Zfp959
Pcbp2
Tmem147
H3f3b
Dnaja1
Zc3h10
Rpl41
Pkm
Dpy19l4
Mob1b
Mrpl40
Hira
Exoc6b
Smarcal1
Rpl36al
Mgat2