ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX236483 | ES cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◣ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Kpna1
Il31ra
Cldn34d
Olfr806
Vmn2r102
Dchs2
Sspn
Gtf3c6
Eapp
Aadacl2fm1
Drg2
Ube2j2
H2bc4
H2ac6
Taf12
Smim17
Dcp1a
Wwox
Sfi1
Csf2ra
H3c6
Ap1g1
BC107364
Mrpl39
Tex14
Ifna13
Tti2
H4c14
Sirt4
Abhd6
Txnip
H2bc6
H4c4
H4c6
H1f3
Rbm17
H2bc12
H2ac12
Uba2
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
Dnttip2
H4c8
H3c8
H2ac10
Cacng2
Agk
Alyref2
Rdm1
Atp6v1h
H3c13
H2bc18
Tmem107
Mrpl44
Zfp143
H2ax
Tmem270
Fyco1
Smg8
Slc29a1
Mymx
Hdhd3
Sema4b
Ccdc83
H1f2
Ndufs7
H3c15
H3c14
H2ac19
H2ac18
Trp53rkb
Scnn1g
Mybl2
Mrpl1
Raf1
Ep400
Dmap1
Ndufc2
Rbpj
Irgc1
Fbxo9
Cilk1
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Ints12
Gstcd
Npas4
Utp3
Rps19bp1
Pafah2
Cryzl2
H4c9
H2bc11
H2ac11
Eif4e2
Ndufaf5
Esf1
Klhl20
Hsd17b11
Ints10
Tph2
Sf3a3
Mybpc3
Jph2
Nme1
Ap3s2
Pipox
Megf8
Gm5820
Psmd2
Spp1
Nuf2
Lrrc59
Sntb2
Med23
Rnf125
H4c3
H1f6
Ndufs3
Kbtbd4
Ppil3
Nif3l1
Spats1
Cpsf1
Dcaf5
Irak2
Fam149b
Ecd
Ntn5
Mtf2
Palb2
Dctn5
Tnrc6b
Ints1
Ccdc107
Cltc
Scrib
Gins3
Opa1
Trmt44
Nsa2
Gfm2
Ppp1r10
Mrps18b
Tpm1
H4c11
Zfp609
Rab33b
Rbm34
Bcl2l1
Tnks1bp1
Vps28
Gdf3
Ppid
Ncam1
Dhx16
1190007I07Rik
Dhx8
Poldip3
Gm3776
Cep85
Slc33a1
Tmem262
Vps51
Mlf2
Sec24d
Rint1
Pus7
Jam2
Adnp
Mrpl21
Ighmbp2
Dhx30
Mrps21
Etl4
Rimbp3
Sox2
Chgb
Ndufaf1
H3f3c
Zyg11a
Scarf1
Rilp
Rubcn
Fyttd1
Hrh2
Sde2
Kdm6b
Capns1
Aaas
H2bc3
H3c3
Tmem101
Snrpe
Gna15
H2ac4
Ptpn6
Grcc10
Ppp1r11
Lyzl6
H3c10
H2bc14
Cdkn2aipnl
Snrpc
Chrnb2
Zbtb37
Hmgxb4
Cacnb3
Sost
Atp5k
Mettl25
Ccdc59
Edc4
Atad2b
H4c12
H2bc15
H2ac15
Cdk5rap1
Stx18
Ttc25
Pou5f1
Kcnk9
Zfp638
Polr2j
Tafa5
Gbx1
Rptor
Mterf1b
Psmg3
Gpatch8
Slc39a3
Pigc
4930558K02Rik
Mrps18c
Helq
Nos3
Svop
Trp53rka
Trmu
Gjc1
Eps15l1
Det1
Msh4
Mtg1
Ttc14
Ddx55
Tubg1
Retreg3
Zfp13
Top1mt
Atg16l1
Ddx56
Nol10
Wdr36
Tekt2
Adprhl2
Mrps15
Cdiptos
Cdipt
Lypla1
Tex19.1
Tkfc
Ddb1
Cdc16
Cbx7
Fam169a
Plxdc1
Arf4
Lrp6
Cipc
Atp6v0d1
Agrp
Arid5b
Golga7b
Ren2
Ren1
H3c7
H2bc9
Zcwpw2
Azi2
Mrps28
Ifi30
Ppp1ccb
Ppp1cc
Surf6
Chd8
Aqp8
Gramd4
Ints5
1810009A15Rik
Yipf2
Timm29
Snx18
Sec22b
Ybey
Mcm3ap
Zmym1
Pigm
Crym
Abca14
Znfx1
Ttc4
Cast
Twistnb
Disp3
Rac3
Cntn2
Ndufb8
Ndufa9
Akap3
Srp68
Fbxl22
Tsfm
Triml2
Morf4l1
Tbcd
Rpl27
Usp30
Gstt2
Npy1r
Hgfac
H2bc13
H2ac13
Rad54l2
Tchp
Zfp532
Necap1
Ciao3
Zbtb45
H4c17
Dffb
Cep104
Sphk2
Rpl18
Fam83e
Rrm1
Spry1
Hsd11b2
Anapc5
Nup54
Dus1l
Xrcc5
Rabggta
Josd2
Aspdh
Cenpp
Fes
Fitm2
Chordc1
Sod2
Taco1
Comtd1
A430057M04Rik
Pou2f2
Nceh1
Ephb1
Paxip1
Nutf2
B4galt7
Kbtbd6
Lima1
Faf1
Arhgef12
Gstm6
Cobl
Ccdc88a
Rpl5
Arcn1
Ints4
Zfp113
Ropn1l
Ift46
Rbm28
Wdr18
Tas1r3
Trir
Get3
Gne
Tars2
Tmem221
Naa35
Ubc
Psmd3
Pex3
Adat2
Slc36a1
Tob2
Dus2
Ddx28
Htt
Dusp12
Angptl6
Fam177a2
Fam177a
Mc5r
Epn1
Rapgef1
Slc15a1
Abca3
Abca17
Gpx1
Phactr4
Def6
Ankrd35
Setd5
Gpr19
Mrps33
Mnat1
Zfp710
Zfp979
Nanog
Epp13
Bfsp1
Gabpb2
Med27
Sdad1
Mrpl35
Zc3hc1
Man2b2
Med4
Sec13
Crocc
Mtmr6
Lsg1
Lhfpl5
H4f16
H2aj
Slc9a1
Tmed9
Hint3
Acp6
A930018P22Rik
Tmem95
Kctd11
L1td1
Errfi1
Rab1a
Zfp598
Ing1
Dnajc11
Ccdc174
Fam220a
Zfp57
Gm5544
Pvr
Banp
Ssbp1
Bms1
Acp2
Snrpd1
Psd
Fbxl15
Tnfsf13
Tomm7
Uqcrc1
Spata24
Gm3448
Gm3417
9030025P20Rik
Kctd5
Dpy19l4
Jtb
Pspn
Alkbh7
Galk2
Cops2
Trip4
Vps18
Pde6d
Cops7b
Gstm1
Pomt1
Ung
Alkbh2
Tdgf1
Gp1bb
Sar1b
Eif3g
Afmid
Tk1
Liph
Pigu
Timm50
Hemk1
6430571L13Rik
Mterf4
Dtd1
Esyt2
Htra2
Dqx1
Aup1
Get1
Snw1
Vpreb1
Top3b
Gatad2b
Cnot10
Ift22
Sgca
Spic
Nt5dc2
Ctdsp1
Kdm5b
Parl
Nfatc4
Naglu
Dppa5a
Rhot1
Stx16
Riok1
Cage1
Eif5a
Ndufv1
Sec23a
Gemin2
Mrpl28
1700008O03Rik
Enpp3
Ccdc110
Rpl3
Dync1i2
Piezo1
Krr1
Tmem242
1700092M07Rik
Fntb
Wdr74
Mrpl58
Eif2b3
Dstyk
Tmem191c
Sulf2
Fam166b
H4c2
H4c1
H3c1
H1f1
Pkm
Celf2
Fndc3b
2700062C07Rik
Pxk
Txn2
Tmem208
Lrrc29
Smug1
Casq1
Zfp981
Olfr1499
Mtmr10
Eps15
Exosc6
Cox7a2
Bloc1s4
Git1
Ankrd13b
Gcnt2
B4galt3
Wdr24
Alpl
Ppp6c
Arl8b
Poglut3
Fra10ac1
Dennd6b
Cwc25
Kbtbd7
Smim8
Rtca
Dbt
Hoxb13
Sgk1
Rnf216
Thumpd3
Vdac1
Klhdc4
Zranb1
Ssr2
Mllt6
Lefty2
Cdk20
Apol9b
Ints3
Cr1l
Atad3a
Plekhm3
Naxe
Kdm1a
Pdss1
Gjb3
Cacng3
Psmd7
Mterf1a
Clk4
BC049762
Ccar1
Chd9
Armc7
Flnb
Camk2b
Zc3h10
Rpl41
Aacs
Zscan25
Mphosph10
Mcee
Napg
Mta2
H2bc1
H2ac1
Nfkbie
Zbtb40
Myo10
Srrt
Zscan22
Tmem151b
Atp5g3
Pfdn5
Ddx20
Sptbn1
Acp5
Jund
Iqcn
Sppl2a
Trmt1
Nacc1
Rpl38
Caprin2
Ppip5k2
Gin1
Wdr90
Psmf1
Ubiad1
Mtor
Cebpe
Tsc22d1
Pdss2
Arl14ep
Cct8
Dhx33
Mrps2
1700007K13Rik
Wbp1
Ino80b
Gemin6
Utp6
Upk3bl
Epb41l4a
Ccr7
Kmt2d
Aftph
Polr1b
Ptpru
R3hcc1
Bloc1s5
Pycard
Dctpp1
Dact3
Wtap
Rbm14
Gm21992
Isy1
Hus1
Med11
Stil
Zscan12
Plvap
Usp37
Cnot9
S100a14
Epas1
Cnmd
H3c11
H2bc22
H2ac22
Atp5g2
Mif
Rnf187
Scfd1
Msra
Sf3b2
Gal3st3
2210016L21Rik
Psmd6
Vps33a
Zfp660
Zcchc4
Ttll3
Plekhb1
Elf3
Cyp2w1
1700020L24Rik
Slc2a1
Mrpl30
Mitd1
Zbtb17
Plpp5
Srarp
H3c2
Nfat5
Uspl1
Mok
Serpina3i
Samd5
Qrfpr
Gm15517
Dhrs7b
Cabp7
Pcbp2
Rfx7
Mkrn2
Asah1
Plekhf2
Ruvbl1
Aym1
Zfp207
Aasdh
Snrpd3
Gucd1
Dcaf10
Anapc10
Abce1
Fmnl3
Pex12
Ap2b1
Pml
Them6
Grtp1
Dmtn
Cirbp
Tle3
Luc7l
Rbl2
Snrnp27
Ikzf5
Acadsb
Ptpn23
Nvl
Ndufc1
Polq
Slc39a6
Elp2
Zcchc3
6820408C15Rik
Aurkc
9530077C05Rik
Anln
Ilf2
Map2k7
Plcd3
Acbd4
Tnpo3
Mrps31
Psmc2
Dnajc2
Otud7b
Rbsn
Specc1
Sema3b
Pstk
Ppp1r8
Hif3a
Ogt
Inhbe
Ifitm1
Acsm3
Ablim2
Atp6v0c
Csnk1a1
Amdhd2
Ankrd40
Dido1
Champ1
Gid8
Rrp1
Rrp15
Tefm
Hif1an
Impdh2
Clcn3
Pgghg
Zfp738
Slc43a1
Bag6
Apom
Zfp141
Emp2
Tulp1
Slc22a14
Ptprj
H1f5
Calm1
Phf12
Ubxn1
Gtf3c3
Tmem115
Btbd8
Ptpa
Crat
Orc5
Nsmce4a
Mib2
Atn1
Ptcd1
Cpsf4
Arpc3
Pld2
Etfbkmt
Mcm5
Ralgapb
Arhgap27
Nufip2
5730455P16Rik
Timm44
Zfp827
Cpped1
Commd2
Parp2
Dst
Mob3c
Gaa
Pld3
2310022A10Rik
Nhp2
Zfp980
Tor4a
Tmprss9
Hvcn1
Gspt1
Srp19
Taf5
Tnfrsf12a
Thoc6
Hcfc1r1
Haspin
Psmg1
Cradd
Nob1
Irf9
Ctc1
Exoc3l4
Ints6
Stat3
Pnp
Ndufs4
Cenps
Tmed5
Ccdc18
Tma16
Espl1
Tfdp2
Myg1
Ipo8
Tspan32
Stmn3
Gna13
Dusp13
Wdr31
Tmed4
Neurod4
Kcnh1
Fstl5
Fgf4
Nemf
Dstn
Fem1b
Mrpl12
Rbm4b
Tpgs1
Phc1
Zfp280b
Nufip1
Gpalpp1
Dgka
Zmynd19
Calm2
Tab1
Kat6a
Pxn
Mob1b
Rfesd
Nudt15
Stk11
Sidt2
Vamp1
Flywch1
Mrpl34
Dda1
Abhd8
Krtap5-5
Cox8b
Adora3
Rps3a1
Hspa4
Arrdc3
Zfp821
Ist1
Rnf123
Mst1
Dynlt1b
Tnpo1
Pnisr
Rps2
Rnf151
Ndufb10
Nip7
Cog8
Micu2
Wdr61
Lrwd1
Alkbh4
Ypel5
Arel1
Mcoln1
E2f3
Appl2
Ddost
Fbxo46
Bhmg1
Sumf1
Vps13d
Fcf1
Ldlr
Fkbpl
Atf6b
Inhbb
Dlx3
Fscn1
Cluh
Zfp668
Zfp646
Timm22
Adipor2
Cox17
Faap20
Cds2
Gtf2h2
Saal1
Saa3
Ppm1f
Commd4
Stra8
Pdlim2
Pde4c
Gm3336
Chek1
Klf2
Rabl6
Mff
Pold3
Ccny
Golga1
Ppih
Rae1
Klhdc8b
Ccdc71
Ssrp1
P2rx3
Thoc5
Ints7
Dtl
Atp6v0a1
Aar2
Sos1
Ddx24
Hook2
Scn5a
Cntnap2
Adra2b
Ranbp2
Med17
Thoc1
Yars
S100pbp
Slc35b2
Zfp770
Oscar
Ndufa3
Camk1d
Elovl6
Elovl3
Cd300ld3
H2bc21
H2ac21
H2ac20
LOC547349
Pemt
Hinfp
Vps11
Cables2
Gprc5b
Mfsd10
Lsm11
Sh2b1