ChIP-Atlas: Target genes

Potential target genes for CPSF3

Query protein: CPSF3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX8018230 | 293
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
CPSF3's Target genes

◢ CPSF3: Average

◢ SRX8018228: 293

◢ SRX8018229: 293

◣ SRX8018230: 293

◢ SRX8018231: 293

◢ SRX10448664: HeLa

◢ SRX10448665: HeLa

◢ SRX10448666: HeLa

◢ SRX10448667: HeLa

◢ SRX5441330: HeLa

◢ SRX5441331: HeLa

◢ SRX5441334: HeLa

◢ SRX5441335: HeLa

◢ SRX9237243: K-562

◢ SRX9237244: K-562

◢ SRX9237245: K-562

◢ SRX9237246: K-562

◢ SRX8945051: U2OS

◢ SRX8945057: U2OS

◢ CPSF3: STRING

H4C15
H4C14
H3C15
H3C14
H2AC19
H2AC18
DUX4
POLR2J3
H2AZ1
DNAJB14
COL23A1
CIRBP
FAM174C
EFNA2
KMT2A
ENAH
MORC3
VPS52
RPS18
B3GALT4
TLCD1
RPL23A
RAB34
NEK8
H2BC21
H2AC21
H2AC20
WDR37
IDI1
H3-3A
IRF2BP2
RRP36
MEA1
KLHDC3
CTDSP1
FRG2C
ZC3H10
RPL41
ESYT1
GH1
CSHL1
H2BC5
H1-4
SCRIB
MORF4L1
ATP6V0C
AMDHD2
RCOR3
VEZF1
ZNF34
RPL8
H4C2
H3C2
H2AC4
H4C1
H4C9
H2BC11
H2AC11
KLF12
EGLN1
C6orf226
COX20
SECISBP2
CKS2
CTNNB1
TARS3
KIF27
PPP3CB
RHBDL1
WDR24
STUB1
JMJD8
HNRNPU
VPS28
RANBP6
KIAA2026
PIP4K2B
PRRC2B
DESI2
H1-2
H3C3
CHD2
ABL2
MMP24OS
MMP24-AS1-EDEM2
FRG2
TMEM230
PCNA
PYCR2
TRAPPC8
POGZ
AKT3
HMGN1
PRSS27
RNASEK
C17orf49
BCL6B
ACTL10
NECAB3
FBXL3
LMBR1
ZWILCH
SNAPC5
RPL4
HMGN2
EPN1
ZBTB2
H3C1
H1-1
SYNRG
H3C13
H2BC18
SRSF11
TBC1D13
H4C12
H4C11
H2BC14
H2AC14
ZNF398
SETD5
RAB4A
GATAD2B
IBA57
MEMO1
AGK
DEDD
VPS9D1
TNRC18
LOC100129484
FAM118A
RAD54L
POLG2
DDX5
PARP1
ZNF581
ZNF580
CCDC106
HIPK1
ZNF513
SNX17
EIF2B4
GTPBP3
ANO8
H4C3
H1-6
PPP1CC
ADARB1
RPS5
NCOA7
EDC4
KMT2C
CLK3
CUL1
UBP1
PCDH9
TPTEP2-CSNK1E
EYA4
QSOX1
CYB561D1
ATXN7L2
NOXA1
TTC5
ID2
ZFAND6
PANK3
EZH2
BRWD1
ZBTB26
RABGAP1
NFKBIA
AKAP8
C15orf39
MAP3K21
AP2S1
ARHGAP35
AKT2
EIF2D
FAM177A1
ZBTB20
YBX1
MRPS16
DNAJC9
HNRNPF
RRNAD1
ISG20L2
DRAP1
C11orf68
RUFY2
NUDT4B
CDC42BPA
HSPG2
CTNNA1
SVBP
ERMAP
GTPBP6
BHLHA9
MAN2C1
HYI
SPIN1
SP3
HECTD1
TFAP4
ACBD3
DYRK1B
PDCD2
TAF10
RRP8
ILK
TPP1
B3GALNT2
CMTM7
BRAF
SP1
PHF23
GABARAP
DVL2
NUB1
RPL17-C18orf32
RPL17
C18orf32
FPGS
FNBP1
TFAP2A
OTUD7B
DPY19L4
SSX2IP
H2BC12
H2AC12
VANGL2
MAP3K2
SLC25A10
MRPL12
NAXE
GPATCH4
RAVER2
ZNF768
ZNF747
DPH7
RRM2
GDPGP1
CIB1
USP21
UFC1
PPOX
RASA4B
ARHGEF11
STAU1
COMMD3-BMI1
COMMD3
BMI1
SLC25A53
FAM199X
SKIDA1
MLLT10
MSL3
NOTCH2NLB
CCDC88A
TGDS
GPR180
CCSAP
ASH1L
LEKR1
NCAM2
ESR2
MRPL2
KLC4
CUL7
UBE2D2
FBXO11
DONSON
TRABD
DSG2
SMIM19
SLC20A2
NUCKS1
SCAMP3
FAM189B
HIVEP1
EPHX1
MKRN1
JAK1
CIZ1
THAP11
NUTF2
CENPT
ARID3B
UBE2J2
KANSL1L
RNF11
RPEL1
CATSPERE
ADSS2
ZMYM4
SRCAP
LOC730183
STMP1
MCL1
SPOPL
PCBD2
UBE2M
CHMP2A
NKIRAS1
RAD9A
PPP1CA
TBC1D10C
NR1D2
NR2C2
PRRT2
MAZ
PAGR1
MVP
SMYD2
DDX59
SATB1
NFAT5
ITGB3BP
EFCAB7
PHACTR2
SMARCD2
ATP11B
OPN3
CHML
ZBTB18
NOTCH1
PIN4
EFCAB2
KANSL1
LUC7L2
MSX2
CDC42EP4
WIZ
PABPN1
HDHD5
CECR2
KMT5B
GTF2IRD2B
ZNF341
TP53BP2
NPIPB9
PEX7
ITGB1
GALNT11
URB2
TAF5L
UBA3
ARL6IP5
EIF3L
ANKRD54
REV3L
ANKRD50
GPAA1
EXOSC4
REPIN1
AGO3
NCOA2
ZNF48
TSEN15
USP39
TMEM150A
RNF181
C2orf68
PRPF40B
SNX11
CBX1
PHF19
USF3
SCRN1
LRRC37A3
PEAK3
OAZ1
ADNP
MKRN2OS
MKRN2
CHD1L
PRKAB2
PRKAG2
ZNF70
VPREB3
C7orf26
STC2
RWDD3
SLC22A23
H4C5
H3C4
H2BC7
H2AC7
H4C4
H3C10
H2BC13
H2AC13
ATXN2
UNC5A
TATDN2
SUMF2
SLAIN1
RAD54L2
THAP9
SEC31A
BACH1
NT5C2
SYT14
KDM3B
KCNIP2
TLK1
DISC1
LRRFIP2
TBXAS1
HIPK2
SAMD1
C19orf67
ZNF862
CLCN5
THRB
SOD2
DHX9
ZNF213
NRAS
ZBTB37
CHAF1B
WDR48
SCN11A
C21orf91
DENND4B
PPP4R2
MSI2
TACC1
MRPL40
HIRA
HOXA3
UBA2
TIGD1
EIF4E2
SPRY2
GAREM1
TMEM68
TGS1
USP12
ABCB10
JAGN1
THAP12
GVQW3
ANKRD36C
ZNF397
PACS1
NEU1
GPC4
PHYKPL
GLRX2
CASC3
EPS15
ANP32B
ATXN7
NAA10
ARHGAP4
RBX1
H2BC15
H2AC15
MTF2
MIER1
DNAI4
TUBB2A
BMP2K
ANKRD28
DNAJC6
UGT1A4
UGT1A3
HSPE1-MOB4
HSPE1
HSPD1
KCNN1
ZNF445
SLC35D1
TRAM2
STX18
DSTYK
HPRT1
SDCCAG8
CEP170
TRDMT1
FNDC3A
INPP5E
UFSP1
ACHE
DBN1
LPGAT1
PPFIA4
TXLNA
DNAJB12
AP1S2
EPM2A
DEGS1
LRIG2
LAMC1
DYNLL2
PHF21B
PTMA
STAG1
USP34
DIDO1
ACBD6
GCLC
MPP5
SESN1
PIAS1
HMGB1
ATXN2L
NBPF1
ZNF652
FAM53C
CDC25C
B4GALT1
POMZP3
PHIP
CDC42
LPAR3
HECTD4
PIK3R1
KANSL3
FER1L5
CMTM3
C15orf61
PBX3
CYREN
TRIM24
GREB1L
RILPL1
SETD6
ZNF76
PHC1
BCAP29
PURA
PLPPR3
C18orf21
PFN2
RBBP8
UBE2V1
RPLP0
GCN1
DENND2B
N4BP3
PITRM1
KCNB2
PRR7
PRKRA
PJVK
ZBTB17
B4GALT6
FAH
RAD23A
CALR
IGF1R
UBE2Z
EXOC2
MIB1
ARHGAP10
SLC27A4
NPIPB6
RFK
SNAP47
JMJD4
UNK
H3-3B
SGPL1
MYBL1
TCAF1
PKP4
CCDC148
KEAP1
ERICH2
SRSF4
ARHGEF12
NUDT4
TGIF2-RAB5IF
TGIF2
H2BC6
SLC39A4
TM2D3
CPSF1
PXK
ZMYND11
ZBTB6
RC3H2
TCTE3
ERMARD
ZNF740
PSEN2
CSAD
TPGS2
APBB2
ZNF865
ZNF524
FIZ1
RNF220
BTBD1
CD276
IQSEC1
RCN2
H2AZ2
PSTK
DDHD1
TLN1
CREB3
ZBTB38
SRRM3
CAPN7
RBM15
PGBD5
PAFAH1B2
STARD4
MAX
LATS1
RALB
ARL8B
WRNIP1
MYLK4
WDR17
MID2
SQSTM1
MGAT4B
SBF2
GOLGA6L4
MACROD1
AFAP1
STON2
DTD1
LMO7
GALNT2
RYR2
FHOD3
PACSIN3
ARFGAP2
TSC1
GFI1B
DSP
CREBRF
TBC1D5
PEX3
ADAT2
SRD5A3
SOWAHC
SEPTIN10
ZNF207
C17orf75
NOTCH2NLA
FOXD3
PTPN14
JUP
NOVA1
RALGAPA1
C19orf48
RPL26
KRBA2
LOC105372440
ACP4
RASA4
MPC2
DCAF6
STUM
TRIM3
TIMM10B
ARFIP2
THEM4
KMT2E
TGM1
RABGGTA
DNAH14
MNX1
HOXB9
GPRIN1
BPHL
E2F3
RFX1
POLR3GL
LIX1L
ANKRD34A
PTPN4
EBAG9
RNF138
GPBP1
RANBP17
ZBTB44
DYNC1LI2
TMEM132A
SMIM13
PCBP2
FAXDC2
CNOT8
BPTF
TAB2
PAQR3
STRN
CRTAP
PTPRU
MECR
TLE1
DCAF1
FAM131A
PNRC1
PHF10
COG2
ATF1
SERTAD2
ATXN7L3
SS18L2
SEC22C
NKTR
SDC4
ADPGK
DYNC1LI1
NME4
DECR2
NOTCH2NLC
FAM207A
ZFYVE9
ANKRD18B
EPB41
CNIH1
SPACA6
CDC73
PARP16
BHLHE40
TARBP1
TRIM44
ZNF697
PLEKHH3
CNTNAP1
CCR10
ARSG
ASPSCR1
IMPACT
ERO1A
SLC16A6
RXYLT1
TMED9
B4GALT7
SPTAN1
CDK13
RNF139
LSS
FBXO30
GET4
PATJ
CCDC38
AMDHD1
RBM26
RNF135
SMARCB1
PRKCQ
CEP68
YPEL1
KCNH1
SYNCRIP
FN1
ZKSCAN2
GAA
HLCS
SLC5A6
CAD
ATRAID
GATA2
TTC21B
HOXD9
HOXD8
DCBLD1
SRXN1
UTRN
PLD4
RUVBL1
EEFSEC
TSPAN10
NPLOC4
GOLGA1
TAOK1
MSRB2
HDLBP
UBE2L3
CRIM1
RIMBP3C
RIMBP3B
SLC17A5
FNBP1L
TMEM223
TMEM179B
ATF3
PRRC2A
AIF1
ARSB
PTEN
KLLN
DGKH
IQGAP1
ZNF644
GOLGA6L10
BRPF1
ATP1B1
KAT6A
SLC44A1
POLG
RNF38
SRR
SMG6
SLC44A3
H1-7
ZMAT1
ID3
SRF
CDC5L
CLN5
PAFAH1B1
SENP8
MYO9A
SUSD5
CCDC92B
H2BC4
H2AC6
WDR27
C6orf120
COA6
DNAJC25-GNG10
DNAJC25
GTF2H2C_2
FBXW2
GTF2H2
KLHL25
RMC1
LYST
RASAL2
UIMC1
FBXL4
OSBPL6
MAPK8IP3
PNMA1
ROM1
EML3
B3GAT3
HES1
SLC2A11
DNAJB2
AKAP13
VDAC3
DTX2
RAPH1
LHX4
MECP2
C3orf80
UBE2N
RBSN
NCBP3
FAM3C
CPOX
CLASP2
RAB43
PDE4DIP
COX5A
SPTSSA
NEK7
TTC23
LRRC28
AHCYL1
CHRNA5
COL6A1
LBR
TMEM250
SLC6A9
INSIG1
OTX1
NT5DC1
EIF4G1
TTLL11
ACADM
ZNF609
LRP11
PSG5
TYMP
SCO2
ODF3B
LMNB1
RNF214
PCSK7
NUP93
ATP2A2
RCBTB1
ACVR1C
SSBP2
USP33
PGBD1
VPS4A
EAPP
AK1
ZBTB10
XYLB
MAP2K7
LHX9
C1orf53
ABI2
RGMA
CEP85L
TVP23B
FZD1
TMCC1
SHC1
PYGO2
PBXIP1
LOC101928120
TRIM65
MRPL38
COMT
TXNRD2
KRAS
DOCK7
NPTN
ACTN2
DUSP14
BRPF3
GRM2
YPEL3
TBX6
LRRC8A
KYAT1
MMAA
LYPLA1
RPL6
CSRNP2
MYOZ3
UAP1L1
MAN1B1
LCN12
FBXW5
C8G
PTPN11
ANKRD36
PHGDH
RHEB
SAPCD2
RMDN2
LARP4B
CDC7
SLC48A1
KLF9
MTHFS
FOXP1
OAT
ARRDC3
INTS9
HMBOX1
STK40
KIF13A
ROCK2
HDAC1
FGGY
SYNE2
GMNN
SIRT7
PCYT2
MAFG
NOXO1
GFER
TIGD3
SYNGR3
ING5
MLLT1
TIRAP
WDTC1
PSKH1
NRN1L
DENND10
PLEKHF2
TTC7A
MCFD2
LNPEP
SYN3
RRP1B
HSF2BP
DPP8
TULP4
SIK2
PLEKHO2
RPL7
RDH10
BCKDK
GDI1
FAM50A
ATP6AP1
KAT8
TRAF4
IKZF4
PKN3
ZC3H4
DCUN1D4
CNPY1
FASN
CXADR
EDEM1
RNF19A
MAPKAP1
SEMA7A
CNN3
INTS12
GSTCD
ASAP3