ChIP-Atlas: Target genes

Potential target genes for CPSF3

Query protein: CPSF3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5441331 | HeLa
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
CPSF3's Target genes

◢ CPSF3: Average

◢ SRX8018228: 293

◢ SRX8018229: 293

◢ SRX8018230: 293

◢ SRX8018231: 293

◢ SRX10448664: HeLa

◢ SRX10448665: HeLa

◢ SRX10448666: HeLa

◢ SRX10448667: HeLa

◢ SRX5441330: HeLa

◣ SRX5441331: HeLa

◢ SRX5441334: HeLa

◢ SRX5441335: HeLa

◢ SRX9237243: K-562

◢ SRX9237244: K-562

◢ SRX9237245: K-562

◢ SRX9237246: K-562

◢ SRX8945051: U2OS

◢ SRX8945057: U2OS

◢ CPSF3: STRING

RABL2B
ZNF335
RABL2A
TSN
SRD5A1
NSUN2
MAPKAPK5
DYNC1LI2
NVL
CACTIN
ICE1
NUP85
PSMD12
MRPS7
MIF4GD
GGA3
POLR3F
DZANK1
VDAC2
GOSR2
S1PR4
NCLN
REXO1
OAZ3
C19orf48
HSPA9
NNAT
BLCAP
NME6
IPO13
POLR2E
GPX4
SUCLG1
TAOK3
SUDS3
UBE2I
CAPRIN1
EXOSC5
BCKDHA
SLC35B1
ZNF576
IRGQ
FAM187A
EFTUD2
CCDC103
RWDD1
MRPS5
ACTR10
RBBP5
COX7A2L
VTI1B
PSMD1
DCTN1
CDC73
PES1
SEC61B
COMMD1
CCT4
SART3
ISCU
RABGGTB
HADHB
HADHA
UPF2
LYRM4
FARS2
TSNAX
PSMG2
CEP76
FARSB
NDUFA4
PDAP1
BUD31
STAM
MRPL11
PI4KB
SUPV3L1
NUP205
STAM2
SKP1
PNO1
MTRNR2L1
USP1
RPL21
ZRANB2
IER3
FLOT1
PAK1IP1
C6orf52
ATP5MG
PHF23
GABARAP
DVL2
SELENOF
HS2ST1
GOLGA5
VPS52
RPS18
B3GALT4
VARS1
GADD45GIP1
HSPA1B
MYC
RPL26
KRBA2
TAF9
RAD17
AK6
ANAPC7
PTGES2
ZWILCH
SNAPC5
RPL4
EIF2S3
RPS27A
CLHC1
PDHX
APIP
NFKBIL1
DDX39B
ATP6V1G2
AXDND1
MTRNR2L8
SFI1
EIF4ENIF1
MRTO4
EMC1
SMC2
MAMDC2
PIN4
ZC3H10
RPL41
ESYT1
TTC8
RPL35A
LMLN
IQCG
TMED1
ZBTB37
TSSK4
TM9SF1
IPO4
RPS11
RPL13A
C6orf226
RPS23
ATP6AP1L
TM4SF1
WDR74
SLC3A2
VPS28
H4C14
H3C15
H3C14
H2AC19
H2AC18
PCBP1
ATP5F1E
PRELID3B
ADK
AP3M1
H4C15
RPL27A
DPH6
MAT2A
SF3B3
COG4
SCRIB
H2BC4
H2AC6
OR6B2
NDUFA10
RXYLT1
SUMF2
ATP6V0C
AMDHD2
BICRA
SYCE2
RBKS
BABAM2
NRAS
TRIM65
MRPL38
H4C12
H4C11
H2BC15
H2AC15
EIF4A2
RPL22L1
H2BC14
H2AC14
PTPN6
C12orf57
ATN1
RPS12
GLRX2
DENR
UFM1
STX5
XPNPEP3
ST13
DNAJB7
PEAK3
OAZ1
DGKZ
RPL17-C18orf32
RPL17
C18orf32
SHC1
PYGO2
PBXIP1
LOC101928120
FAM104A
C17orf80
C6orf47
BAG6
APOM
PACSIN3
ARFGAP2
MPDU1
LOC100996842
EIF4A1
CD68
MED1
CDK12
DDIT4
EDC4
RPS5
RNF225
PAF1
MED29
HDGF
MRPL24
GORAB
P4HB
ARHGDIA
DUX4
RPN1
PROSER1
NHLRC3
SYNRG
RBM39
PCBD2
ANKLE2
ALKBH5
MTRNR2L2
MSH3
DHFR
H4C3
H1-6
PTMA
RPL37
GTF3C4
DDX31
H1-2
H3C3
UBE2M
CHMP2A
MRPS16
DNAJC9
GET4
RPS2
RPL3L
RNF151
NDUFB10
H2BC21
H2AC21
H2AC20
RNASEK
C17orf49
BCL6B
H2BC5
H1-4
PRKAG1
EXOSC6
ABTB1
WDR46
RGL2
PFDN6
PRDX2
JUNB
MSH5
MPIG6B
LY6G6C
DDAH2
CLIC1
RPL12
LRSAM1
SIRT7
PCYT2
MAFG
LAMP1
INPP5E
RPS29
LRR1
SRSF11
LRRC40
ZNF34
RPL8
ZNF276
VPS9D1
TBCK
AIMP1
SYNGAP1
PHF1
CUTA
MRPL2
KLC4
CUL7
CIRBP
HNRNPA1
CBX5
NFE2
CMTR1
RPL7
RDH10
NDST2
CISD3
RPL3
POLG2
DDX5
CEP95
STK36
RNF25
FAM131A
ZCWPW1
PPP1R35
MEPCE
EPN1
PRRT2
MAZ
PAGR1
MVP
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
CNPY2
BNIP3
RIT1
TUBB
MDC1
RPL10
DNASE1L1
RGS14
LMAN2
VARS2
GTF2H4
RHBDL1
PRKRIP1
RHOT2
SPHK2
SPACA4
RPL18
FAM83E
RPS10-NUDT3
RPS10
MRI1
C19orf53
ID3
SURF6
NAPRT
MROH6
TRAP1
PFDN5
MYG1
ZBTB45
SLC27A5
ZNF581
ZNF580
CCDC106
FADD
NRIP1
TSC22D1
TTYH2
RPL38
BTBD10
TTC33
RAD23A
CALR
GPAA1
EXOSC4
ZNF585B
ZNF383
SGK1
SLC25A11
RNF167
PFN1
ENO3
PPP1R10
MRPS18B
ATAT1
MSH4
TIMM13
RPL19
CACNB1
RRP36
MEA1
CCDC34
POLDIP3
SMG5
TMEM79
SEC11C
H2AZ1
DNAJB14
WDR90
MCRIP2
FLYWCH1
RPL6
RICTOR
FOXD3
AGAP11
ADIRF
RPLP0
GCN1
EEF1A1
LOC105372440
ACP4
HMCES
HOXA3
RACK1
HOXA6
HOXA5
SLC39A13
MOV10
ARHGAP11A-SCG5
ARHGAP11A
MMP24OS
MMP24-AS1-EDEM2
EIF6
PIP4P1
OSGEP
APEX1
C19orf71
MRM1
DHRS11
RPL13
CPNE7
TMPPE
GLB1
CD320
ID1
RCOR3
CLUAP1
C16orf90
SECISBP2
CKS2
POLR2J3
ARF3
SPCS1
GLT8D1
HES7
ALOXE3
POLD1
NR1H2
ECI1
SF3A3
FUT11
CHCHD1
NAA10
ARHGAP4
SMIM22
ROGDI
DPH7
NOP53
TMSB10
VWA7
LRRC37A3
ACTB
VIM
H4C8
PPARA
MRPL34
DDA1
ABHD8
SLC35E3
ATXN2
CENPBD1
H4-16
H2AJ
TSEN54
LLGL2
CASKIN2
RECQL4
LRRC14
LRRC24
C8orf82
ELP5
CTDNEP1
STYXL1
MDH2
MOGS
MRPL53
SLC25A10
MRPL12
FTH1
BEST1
H3C13
H2BC18
TUBGCP6
HDAC10
WDR24
STUB1
JMJD8
GGA2
PRDM10
NAT10
JMJD7-PLA2G4B
JMJD7
CD79A
CELF1
TSKU
GP1BA
TRIP4
PCLAF
RHOB
STRIP1
POMZP3
COMT
TXNRD2
HCN2
ZMIZ2
PSMD5
GNG14
DHPS
SCAMP3
FAM189B
WDR6
NDUFAF3
DALRD3
FAM174C
CCAR2
C8orf58
H4C13
H3C11
H2AC16
H1-5
CYBA
SLC26A11
GPS2
EIF5A
TBC1D13
DBP
BAZ2A
ATP5F1B
TRIP6
SRRT
NDUFS3
KBTBD4
FAM180B
LDHC
NDUFS7
NUF2
MAP2K2
ARHGEF1
ABHD17A
PUF60
TMEM107
COMMD2
ARL4D
PNMA1
H4C2
H3C2
H2AC4
TOB1
CARD6
H4C9
H2BC11
H2AC11
MRPL40
HIRA
GTF2IRD2B
GTF2IRD2
ADPRHL1
SLC39A7
RXRB
RING1
HSD17B8
CRELD1
SIGMAR1
ARID3C
H4C1
H3C1
H1-1
NOP14
GRK4
SIX5
DMPK
DRAP1
C11orf68
LIFR
CDK11B
CDK11A
ACTL10
NECAB3
SELENOH
ABCB6
TSPAN10
NPLOC4
XRN1
NOP56
TFAP2A
IDH3B
TUBA1B
PDCD6
GNG3
BSCL2
ERCC1
LRP6
CS
DPY19L4
TCHP
C5orf24
TATDN3
NSL1
NPAS4
NUDT1
MRM2
MAD1L1
RCE1
NDUFA4L2
WDR70
NUP155
SHMT2
MAPK8IP3
TMEM43
CHCHD4
SCAP
PAIP1
CBX4
POLR2J
ARHGAP12
GRAMD2A
ZNF446
ZNF324
STOML2
PIGO
AURKAIP1
ISG20
GPN2
ZNF653
GAPDH
GFAP
ERGIC2
LBR
H2BC12
H2AC12
FLOT2
DHRS13
HNRNPU
ZNF341
RNF166
CTU2
ZFP36
PLEKHG2
CHD2
SDE2
C7orf26
TMEM250
PPIB
SNX22
ZNF770
TAOK2
PMF1-BGLAP
PMF1
TRIP13
BRD9
SDHA
CCDC127
AKAP8
NXF1
DNAJB12
ABCF1
KIF2C
CCDC138
TMEM267
FBXW9
VPS50
HEPACAM2
CTDSP1
MRPS34
EME2
NME3
THOC5
NFAT5
SPSB3
NCBP3
DIDO1
SMN2
SMN1
TRAPPC9
SHTN1
SCAMP5
SSBP1
CSNK1G1
ERCC6L2
MATR3
SRF
CUL9
PAOX
ECHS1
TAF12
SLC16A3
GOLM2
WDR47
TMEM39B
H4C5
H3C4
H2BC7
H2AC7
CHD8
TMSB4X
BCAP29
POLR2C
PCBP2
TUBA1C
EHMT1
SLC39A1
CRTC2
CREB3L4
C16orf46
PACS1
GBA
RAB5B
PMEL
CDK2
COX20
ZDHHC23
MARCHF6
RUVBL1
ASXL1
MTF2
EEFSEC
CCDC43
TOM1
SETD1A
ORAI3
PURA
ANKFY1
SPATA25
NEURL2
CTSA
HPS6
ARMH3
NELFA
GSTA4
URM1
ZSWIM1
CTNNB1
DSTYK
TOMM20
SMDT1
PHETA2
NAGA
GRB2
MYO18A
LPCAT1
CCDC86
HMGA1
THEM4
SMIM29
IREB2
TRMT2A
RANBP1
ZNF511
TUBGCP2
GADD45B
NME4
DECR2
TXN2
EIF2D
GPANK1
CSNK2B
SPATC1L
LY6G5B
GAA
MTIF2
RAB3IL1
ROPN1L
MEMO1
OTUD7B
TMED9
B4GALT7
TMEM262
SKA3
MRPL57
TLCD1
RPL23A
RAB34
NEK8
FHL3
PTCD1
CPSF4
LRRC59
TAF2
CDC5L
MDM4
RAC3
DCXR
SLC15A4
RMI1
HNRNPK
ADM
PHF2
TCF3
AHRR
OSMR
NOLC1
HAGHL
CCDC78
ANTKMT
METRN
ATG4D
NOP2
DRG2
TOMM6
PRICKLE4
FRS3
EXOC3
PDCL3
ILF2
NPR1
MAPKBP1
CYB561D1
ATXN7L2
RAD9A
PPP1CA
EIF3F
MRPS23
CYRIB
SLC39A4
ULK3
NAA80
IFRD2
HYAL3
HYAL1
SEMA4A
CPSF1
PCBP4
ABHD14B
ABHD14A-ACY1
ABHD14A
NDUFB2
CHD1L
PRKAB2
RPS28
NDUFA7
SLURP1
TRAF7
RAB26
KRT8
KRT18
PPIA
TRAF4
NT5C
TAS1R1
NOL9
UBE2H
TRIM37
FBF1
GPX1
WDR31
BSPRY
RPP40
ZNF286A
BRIX1
ZC3H12A
BHLHE40
NSFL1C
TGOLN2
KLHL12
TNFRSF12A
THOC6
HCFC1R1
CLDN6
HES3
JOSD2
ASPDH
ICMT
PPP1R1B
CLCN7
NEUROD2
SLC29A1
MYMX
GSTO2
TSFM
ZNF358
MCOLN1
TMEM139
CASP2
RNPS1
VEZF1
SNAP47
JMJD4
EAPP
MADD
CALM1
KLHL15
AGL
AFF4
SLC50A1
EFNA1
DPM3
ZNF76
BAX
CLPTM1L
CYB561
GATD3B
GATD3A
GNE
ZNF583
USP21
UFC1
PPOX
CSRNP2
RDH5
CD63
DCP1A
HASPIN
IRF9
SSX2IP
ANKRD13C
SCNN1A
LTBR
ENDOV
HMGB1
NOTCH2
EIF4H
USPL1
TDP2
ACOT13
SFXN4
ARL17B
SYT7
GABPB2
RPLP1
RIPK1
RSAD1
CHAD
WDR11
EPHB4
MAN2C1
H3C8
H2BC10
CCDC130
AKAP1
CEP350
SLC45A4
FOSL1
FIBP
CCDC85B
UPF3A
PABPN1
ABCF3
PDPK1
CEMP1
RPSA
RBL1
FKBP5
SNTB2
SIRT4
NOC3L
AGO3
SUGCT
MPLKIP
CD22
TMEM223
TMEM179B
CFD
GADD45A
ROM1
EML3
B3GAT3
ATAD2
RABIF
AMZ2
RPL27
IFI35
KDM6B
FAM162A
CCDC58
WASHC2A
TMEM170A
RPS26
PRSS8
HNRNPA1L2
CXorf38
RELA
PRDX1
CIAO3
CLDN15
NR4A1
FIS1
RGS20
ATP6V1H
TRIOBP
DNAJC25-GNG10
DNAJC25
ENOSF1
NAA60
NPY4R