ChIP-Atlas: Target genes

Potential target genes for CPSF3

Query protein: CPSF3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9237246 | K-562
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
CPSF3's Target genes

◢ CPSF3: Average

◢ SRX8018228: 293

◢ SRX8018229: 293

◢ SRX8018230: 293

◢ SRX8018231: 293

◢ SRX10448664: HeLa

◢ SRX10448665: HeLa

◢ SRX10448666: HeLa

◢ SRX10448667: HeLa

◢ SRX5441330: HeLa

◢ SRX5441331: HeLa

◢ SRX5441334: HeLa

◢ SRX5441335: HeLa

◢ SRX9237243: K-562

◢ SRX9237244: K-562

◢ SRX9237245: K-562

◣ SRX9237246: K-562

◢ SRX8945051: U2OS

◢ SRX8945057: U2OS

◢ CPSF3: STRING

FRG2C
MAMDC2
LOC102724770
DGCR6
USP29
ART1
SMIM14
FRG2
MTRNR2L1
HMGB1
ARL4D
CCDC200
DUX4
DEFA5
PHRF1
VPREB1
ZNF285
WDR74
STX5
SNX9
NOP14
GRK4
TMEM242
TOP1MT
MUC3A
COL23A1
ZNF335
ETDB
POLR3F
DZANK1
PDK2
MAPKAPK5
UGT1A4
UGT1A3
ZNF718
ZNF595
SPC25
G6PC2
LRRC6
SERPINB5
CDH11
MTRNR2L2
MSH3
DHFR
TSPYL2
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
CACTIN
BRWD1
NUP205
KAAG1
DCDC2
GAGE2B
TSN
TXNIP
GAGE2A
TSPAN19
LRRIQ1
IPO13
DRD4
KRTAP19-7
SLC35B1
RBBP5
DST
BEND6
BTNL9
UST
STX10
IER2
USP17L22
USP17L21
USP17L20
USP17L12
NXPE4
PRDX2
JUNB
NVL
FTH1
BEST1
USP17L19
USP17L18
USP17L17
USP17L11
FTL
RGS19
OPRL1
LKAAEAR1
H4C12
H4C11
H2BC14
H2AC14
PMP2
FABP9
PLA2G4A
VDAC2
LYRM4
FARS2
TSC1
GFI1B
H4C14
H3C15
H3C14
H2AC19
H2AC18
TAOK3
SUDS3
NFKB1
ADGRE5
PEX5
PAFAH2
MRPS7
MIF4GD
GGA3
ARHGAP39
FAM187A
EFTUD2
CCDC103
PSMG2
CEP76
TMIGD3
ADORA3
PAK1IP1
C6orf52
LIM2
C19orf84
RCC1
FOXD4L5
EAPP
TMEM106C
H4C15
PAXBP1
USP17L13
USP17L10
RPEL1
TAF12
TBCK
AIMP1
BSG
SPATC1L
ZNF576
IRGQ
HADHB
HADHA
KRTAP5-11
GAGE12G
GAGE12J
KBTBD11
C19orf48
CTSE
ICE1
PARP16
HNRNPA3
SSH1
RBL1
AFAP1
RGCC
NUP85
DEFB131B
ABCA6
RWDD1
UPF2
STAM2
H2BC21
H2AC21
H2AC20
SUCLG1
TRIM8
CNPY2
ITGAV
ZNF557
MBD3L3
NME6
H3C13
H2BC18
CHRNA1
H4C9
H2BC11
H2AC11
FRG1
POLR2E
GPX4
MRPL11
TOP3B
DEFB106B
DEFB106A
DEFB105B
DEFB105A
DEFB104B
DEFB104A
KCNV2
ZWILCH
SNAPC5
RPL4
H3C10
H2BC13
H2AC13
DNAJB12
EGR1
REXO1
UBC
POLR2J3
RALGAPB
PTGES2
SLAIN1
ATAD2
LSM10
EXOSC5
BCKDHA
FOXD4L4
OR10D3
SOAT2
IGFBP6
SMC2
H2BU1
H2AW
CLTCL1
TMEM225B
MAS1L
PPIAL4F
PPIAL4E
PPIAL4D
CALM2
MYC
NNAT
BLCAP
PDE4DIP
AURKAIP1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
TMEM35B
H4C3
H1-6
CYB561D1
ATXN7L2
OAZ3
SUPV3L1
LAIR2
RCOR3
RGSL1
HBQ1
HBA2
HBA1
USP17L15
RHEBL1
KMT2D
HBZ
HBM
HBE1
RPS26
RLN3
MXRA5
TEKT5
H2BC15
H2AC15
HRNR
FCMR
HMBS
DPAGT1
H2AX
RNF223
MARCHF6
STX18
NFKBIL1
DDX39B
ATP6V1G2
PSMD12
STPG3
FAM166A
TUBB4B
HBG1
HBD
STK32A
EGFLAM
C7orf33
HCN2
TSPOAP1
WIPF2
RNASEK
ALOX12
UBE2I
POLR3E
GFOD1
NUP214
LAIR1
CALN1
NCOA7
FAM155A
THAP7
PRRG4
PPIAL4H
PPIAL4G
DNAJC12
SIRT4
SLC3A2
ARHGEF12
TLCD5
KIF2C
C1QTNF8
GSTA4
STK38L
CNKSR3
TMEM222
MSR1
H2AB3
H2AB2
H2AB1
LZTR1
ZC3H10
RPL41
ESYT1
GH1
CSHL1
RABL2B
VPS52
RPS18
B3GALT4
C6orf226
RABL2A
PHF23
GABARAP
DVL2
PGK1
SRD5A1
NSUN2
H2BC4
H2AC6
EDC4
VPS28
DYNC1LI2
RPL17-C18orf32
RPL17
C18orf32
VTI1B
SYCE2
RPL26
KRBA2
H2AZ1
DNAJB14
UBE2M
CHMP2A
VEZF1
COX20
IER3
FLOT1
SCRIB
SYNGAP1
PHF1
CUTA
SUMF2
PRRT2
MAZ
H2BC5
H1-4
SYNRG
NRAS
PPP1R10
MRPS18B
ATAT1
GNG14
POLG2
DDX5
CEP95
DHPS
MPDU1
LOC100996842
EIF4A1
CD68
S1PR4
NCLN
ATP6V0C
AMDHD2
RRP36
MEA1
HSPA9
MRPS16
DNAJC9
MRI1
C19orf53
H1-2
CAPRIN1
H3C3
ZNF34
RPL8
NDUFAF3
DALRD3
ID3
MRPL2
KLC4
CUL7
GOSR2
H4C2
H3C2
H2AC4
NAT10
FAM131A
EPN1
MTRNR2L8
CIRBP
PAGR1
SECISBP2
CKS2
RIT1
AKAP8
H4C1
MSH4
FAM174C
PACSIN3
ARFGAP2
EIF4A2
CHD2
H4-16
H2AJ
DCTN1
VARS1
PTPN6
C12orf57
ATN1
ZBTB37
IFITM3
IFITM1
INPP5E
H3C1
H1-1
CTDSP1
RPL22L1
MRPS5
ATP5F1E
RPS11
C6orf47
BAG6
APOM
H2BC12
H2AC12
MVP
DDIT4
IFITM2
RAD23A
CALR
SLC35E3
ABTB1
RHBDL1
TLCD1
RPL23A
RAB34
NEK8
PTMA
CDC73
ACTR10
RHOB
JMJD7-PLA2G4B
JMJD7
COX7A2L
ZNF581
ZNF580
CCDC106
RPS2
RPL3L
RNF151
NDUFB10
PSMD1
PRKAG1
TSSK4
WDR24
STUB1
JMJD8
HNRNPA1
CBX5
RPLP0
GCN1
SNX16
GGA2
SOX15
HES7
ALOXE3
SLC38A2
C17orf49
BCL6B
EEF1A1
TSNAX
SEC61B
COMMD1
CCT4
STAM
PFDN5
MYG1
GPAA1
EXOSC4
TUBB
MDC1
RPL13A
CXorf38
PCBP1
MSH5
MPIG6B
LY6G6C
DDAH2
CLIC1
SCAMP3
FAM189B
GADD45B
RPL27A
SART3
ISCU
RPS27A
CLHC1
P4HB
IER5L
SIRT7
PCYT2
MAFG
NAA10
ARHGAP4
RPS23
ATP6AP1L
PRKRIP1
SKP1
NFE2
PI4KB
RABGGTB
ADM
KMT5B
MOGS
WDR37
IDI1
MRM1
DHRS11
SLC39A7
RXRB
RING1
HSD17B8
DPH7
SRSF11
ARHGDIA
TMEM107
NADSYN1
DHCR7
USP1
PDAP1
BUD31
SHC1
PYGO2
PBXIP1
LOC101928120
RABL6
CCDC183
PES1
RELA
TMSB4X
MRPL40
HIRA
GPN2
H4C6
RPL13
ZNF653
MAT2A
NDUFA4
ZBTB45
WDR6
PDE4A
MRPL53
SLC27A5
FAM228B
CPNE7
RPL35A
LMLN
IQCG
DAPK3
SGK1
TP53I3
SF3B6
POMZP3
CDK11B
CDK11A
TBK1
ZRANB2
RPL21
CCDC34
NUDT1
MRM2
MAD1L1
SNAP47
JMJD4
FLOT2
DHRS13
ADK
EIF2S3
FARSB
HMCES
ATP5MG
UCKL1
IRF2BP2
H4C5
H3C4
H2BC7
H2AC7
EPN2
TM9SF1
IPO4
TMEM230
PCNA
KMT2A
GRAMD2A
NOP53
E2F3
VAMP2
H3C6
SFI1
EIF4ENIF1
HDGF
TUSC2
RASSF1
SH3BGRL3
DONSON
TAF9
RAD17
AK6
TIMM13
FLYWCH1
HYAL2
TMEM132A
SELENOF
HS2ST1
MMP24OS
MMP24-AS1-EDEM2
EIF6
ZFP36L1
GET4
FUT11
CHCHD1
EFNA2
ZNF446
ZNF324
NDST2
H4C7
H3C7
H2BC9
MAPK8IP3
MOV10
PEAK3
OAZ1
PSMG1
MAML1
ZNF276
VPS9D1
MID1IP1
H3C12
H2BC17
H2AC17
ZNF628
NAT14
COX18
CCDC24
H4C4
C5orf24
SSC5D
TOM1
GPANK1
CSNK2B
MT2A
SIT1
CCDC107
ARHGEF39
SLC25A11
RNF167
PFN1
ENO3
GTF2A2
PNO1
NANOS1
PIN4
SLC25A10
MRPL12
SIX5
DMPK
RPL12
LRSAM1
PDHX
GAPDH
APIP
HMGN2
WDR90
MCRIP2
MRPL24
NOLC1
HSPA1B
ADGRA1
LOC105372440
ACP4
ACTL10
TMSB10
IKBKG
G6PD
TM4SF1
AXDND1
WDR46
RGL2
PFDN6
ID1
CDH24
ZNF48
DYRK1B
NECAB3
CAPNS1
INTS5
GANAB
RPS5
RPS28
NDUFA7
H2BC8
H2AC8
RECQL4
LRRC14
TRIM37
LRRC24
C8orf82
BAZ2A
STAG1
GADD45GIP1
CD79A
ZFX
SETD1A
ORAI3
ARHGEF1
CYRIB
WBP1
INO80B
AVPI1
IGF2BP3
VWA7
NPM3
FGF8
PCBD2
RPS29
SURF6
CDK16
NXF1
CISD3
THAP9
SEC31A
SCFD1
MDP1
CHMP4A
TAF10
RRP8
ILK
EXOSC6
VARS2
GTF2H4
SLC50A1
EFNA1
TPP1
TUBGCP6
HDAC10
PIP4K2B
PNMA1
TNFRSF12A
THOC6
HCFC1R1
CLDN6
PHLDA1
ZNF513
SLC39A4
TRIM65
RPL10
CCDC138
RPL3
PDCD2L
GMPPB
AMIGO3
RPL37
ANAPC7
FOSL1
FIBP
CCDC85B
MAN2C1
TEDC2
DRAP1
C11orf68
GOLGA5
UQCC3
LBHD1
PCBP4
ABHD14B
ABHD14A-ACY1
ABHD14A
FBF1
ZNF771
H4C8
SELENOH
MRPL38
CSKMT
C11orf98
RPL35
ARPC5L
CD320
NELFB
POLD1
NR1H2
ATP5F1B
HAGHL
CCDC78
ANTKMT
RCE1
SPHK2
RXYLT1
NKIRAS1
TMED1
GSTO2
SPACA4
RPL18
FAM83E
UNK
H3-3B
CEBPB
XRN1
TARBP2
MAP3K12
MRPL28
CDC42EP1
MRTO4
EMC1
LDHC
DNASE1L1
EIF1
RPS15A
MRPS34
EME2
SPOUT1
RHOT2
KLHL11
FADS2
FADS1
TSEN54
LLGL2
MTA2
SNAPC4
BAG2
UBTF
NOP56
SNX14
TMEM223
TMEM179B
SNX17
EIF2B4
METRN
HAX1
ECI1
STYX
DPM3
NME3
MT1M
MT1E
MAPKBP1
PIP5KL1
DPM2
BICRA
TUT1
SP3
UPF3A
NAPRT
MROH6
YJU2
NRIP1
ZGLP1
TSC22D1
FDX2
IMPDH2
H3-3A
ALLC
TTC8
MAF1
C7orf26
PWP2
LOC102724159
ARF3
LAMP1
CASKIN2
HPDL
P2RY11
EIF3G
INPP5K
WDR38
TYMP
SCO2
ODF3B
CELF1
MLLT6
TFAP2A
BTBD18
GLRX2
UXT
ELK1
MATR3
WDR97
DPH6
WDR45
PRAF2
OGFOD2
ARL6IP4
TTC33
MST1
GATD3B
GATD3A
RPS12
GAS2L1
COASY
FNBP1
ROPN1L
MLX
PPAN-P2RY11
PPAN
ULK3
OR6B2
NDUFA10
CDKN1C
PRELID3B
SRSF4
LMNB1
RBM4
RILP
MED1
CDK12
TRIP6
SRRT
CTNNAL1
PROCA1
USP21
UFC1
PPOX
RPL7
RDH10
TOB2
GTF3C4
DDX31
HOXA3
MUC1
NDUFS3
KBTBD4
FAM180B
THOC5
IDH3B
FAM104A
C17orf80
RNF225
ZNF35
LARP1
ZBTB26
RABGAP1
DUSP2
ASTL
ZNRD2
FAM89B
EHBP1L1
VPS4A
TRABD
ARID5B
SLC39A1
CRTC2
CREB3L4
GPS2
EIF5A
IGF1R
TTYH2
RPL38
PABPN1
ICA1L
RBKS
BABAM2
AGO3
RPN1
DENR
TMEM109
SLC35A2
PIM2
ZBTB12
EHMT2
C2
KIF27
DYNLL1
ABCB6
FADD
ANAPC4
ISL2
SLC25A39
NAA80
IFRD2
HYAL3
WDR81
RAB40C
BCAP29
ATXN2
RPL6
TAOK2