ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX104410 | ES cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◣ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Zfpm1
Slc44a2
Map2k4
Tsga10
Klhl36
Mfge8
Zdhhc20
Dok4
Tbc1d16
Ccdc40
Angel1
Tnfaip8
Mfap3l
Nkd1
Psen2
Pcgf5
Nrbp2
Spata2l
Lrrfip1
Kazn
Plxnd1
2310022B05Rik
Abtb1
Dennd4c
Gm2a
Acsl1
Trrap
Znrf3
Xylt2
Txndc5
Pdp1
Pknox1
Ccsap
Cpm
Eif2ak4
Usp12
B4galt5
Degs1
Marf1
Cers5
Garem1
Cmtm4
Rassf4
Acer3
Tpmt
Kdm1b
Dlc1
Slc8a2
Arfgap3
Nxn
Atox1
Phf23
Pole4
Orai1
Smurf1
Sesn1
Cep57l1
Rad51ap2
Prpf40b
Adpgk
G3bp2
Uso1
Plag1
Ccdc112
Tspan17
Cadm4
Sema3f
Tmem123
Tpst2
Iffo2
Asap3
Fzr1
5031439G07Rik
Slc19a2
Glrx3
Sspn
Slc8b1
Zc3h12a
Sp1
Asmt
Gdpgp1
Cib1
Gatad2a
Trappc2l
Galns
Anapc4
Usp3
Vps26a
Acads
Snx8
Napepld
Ppp2r5c
Fbxo43
Homer3
Pip4k2b
Prodh
Pak1
Vgll4
Raly
Ldlrap1
Dusp11
Hpcal1
Slc12a4
Larp1b
Saraf
Tbc1d14
Chaf1b
Cdc42se2
Pdk1
Micall2
Slc29a4
Twsg1
Add3
Ctdsp2
Ogfod3
Hexdc
Tmtc2
Csgalnact2
Zbtb2
Bcam
Xpr1
Rab22a
Zfp28
Spsb1
Tspan14
Hebp1
Slc25a15
Oasl1
Ccdc9
Litaf
Ripk2
Arhgef3
Esd
Ing5
Acadm
Pofut2
Traf5
Mapk8
Anxa11
Gpr155
Nmt2
Aacs
Xpc
Lsm3
Ankrd50
Qsox1
Ell
Garnl3
Vkorc1l1
Snx22
Pim1
Pitx3
Dynlt1b
Tnip2
Mesd
Tmem169
Pecr
Eef2kmt
Pex10
Dars
Sh2b3
Rell1
Bicdl1
Kctd6
Tmem64
Gpr157
Atl2
Trim21
Gxylt1
Prdx3
Sertad2
Frat2
Hs6st1
Jund
Klf16
Vav2
Cmip
Tmub2
Afg3l2
Rab43
Yars
S100pbp
Nepro
4921524J17Rik
Sarm1
Pwwp3a
Snx21
Ctnnbip1
Id3
Lss
Tmem158
Lnpep
Scarb1
Copg2
Glt28d2
Brpf1
Slc2a13
Dynlt1a
Fnbp1
Fgfr3
Fam210b
Arrdc1
Gins2
Nup107
Tmem87b
Spryd7
Sgtb
Nln
Pkd1
Pias1
Prex1
Nfe2l2
Zbtb37
Cmtm6
Bcap31
Abcd1
Crocc
Mios
Papolg
Dnm3
Gk5
Slc4a11
Rhpn2
Prpsap2
Inpp5a
Clybl
Paqr3
Lonp1
Catsperd
Wipi1
Dnpep
Dop1b
Dera
Ntmt1
Rab39
Mnd1
Helb
Zhx1
Urb1
Gja3
Pou3f1
Baiap2l1
Osbp2
Mtrf1l
Ola1
Lamc1
Ccdc82
Rbis
Dynlt1f
Dynlt1c
Plcd1
Cpne3
Sp4
Gcnt1
Fah
Gng12
Fez2
Shcbp1l
Tom1
Setmar
Notch1
Plcd3
Acbd4
Llgl2
Ldlrad3
Mindy2
Ascc2
Cyld
Mast3
Ctnnal1
Crmp1
Spata13
Bhlha15
Erc1
Clic4
Cpt2
Usp28
Tctn1
Gpc5
Abcb9
Rbbp6
Med26
Ppp2r3a
Slc38a10
Chmp5
Bag1
Trappc4
Rps25
Mapk9
Pgbd5
Avpi1
Tmem220
Cep55
Ern1
Sdhc
Mpz
Gpbp1
Rab11fip1
Mfsd14a
Opn3
Zfp746
Tbc1d2
1110008P14Rik
Atp1b3
Tppp
Nrtn
Fbxl21
Agpat2
Tram2
Syn2
Sntg2
Brd3os
Bri3
Mpc2
Dcaf6
Plekho2
Grsf1
Slco4a1
Cep70
Cox19
Impa2
Stx1a
Mex3d
Rxylt1
Hddc2
Dipk2a
Cactin
Tmem221
Ing2
Blvrb
Megf6
Tec
Trp53bp2
Tmem41a
Atp7b
Alg11
Frmd6
Rrbp1
Ndrg2
Myo6
Ssh3
Spire2
Slc22a21
Brat1
Smg1
Slc22a5
Hk1
Casp9
Fbxo31
Acy1
Pcyox1
Sowahc
Septin10
Rab3d
Pnpla3
Celf6
Adap2
Mboat2
Sec23a
Acer2
Sugct
Mplkip
Rnaset2b
Rnaset2a
Fam76a
Plk3
Csnk1g2
Lims1
Zfp78
Plrg1
Fancc
Nt5dc3
Kremen1
Ppargc1b
Wdr20
Otud1
Avl9
Adh5
Inpp4a
Ywhab
Sh3bp4
Slc29a3
Nadk
Ppfibp1
Eepd1
Mphosph10
Mcee
Adss
Ak7
Clcn3
Habp4
Sergef
Btbd2
Optn
Fbxo5
Mgst3
Polr1d
Lnx2
Rnf2
Ube2g1
Golga5
Plekhg5
Tmem132c
Gpc3
H6pd
Nt5c3
Pqlc3
Capzb
Limk1
Lonrf1
Fam219a
Dnaic1
Tmed6
Ahsa2
Itprid2
Cyb5r1
Akap7
Polr1e
Spa17
Siae
Znfx1
Txnrd3
Syt14
Prkar1b
Dnaaf5
Inpp5f
Lin7b
Anxa5
1810062G17Rik
Osbpl9
Foxn2
Rc3h1
Fhod3
Prrc1
Slc37a4
Vcl
Ubr3
Heatr1
Tbc1d23
9430038I01Rik
Cdc34
Tmem50b
Camsap1
Setx
Rassf3
Actr5
Ebag9
Arhgap29
Rabep2
Pter
Manea
Ep400
Hspg2
Agps
Nbeal1
Ap3d1
Nfkbie
Zfp983
Dhdds
Ogfrl1
Rpl31
Mbd2
Zfp664
Ccdc92
Ppfia4
Rrm2b
Phf10
Ankrd10
Arrb2
Wrn
Purg
Tmem240
Abhd18
Slc19a1
Brf1
Xpnpep1
Uqcrq
Sdc1
C1ql1
Eea1
Mertk
Xkr8
Klc3
Tmem192
Micu1
Ctbs
Atg14
Tarsl2
Gdpd5
Arhgef17
Senp8
Myo9a
Hps6
Man1c1
Phc2
Pop7
Orai3
Strada
Ap3m1
Adk
Skap2
Ccdc85c
Hic2
Acot7
Saysd1
Sox12
Amz2
Epb41l2
Trip10
Shank3
Fzd9
A930018P22Rik
Nod2
Kcnq3
Tm2d2
Adam9
Lsm11
Trappc9
Pbx2
Hmox2
Mcm9
Aprt
Hspa2
Txn1
Fbrsl1
Smox
Pgpep1
Mybl2
Ipo5
Zdhhc2
Slc25a40
Dbf4
Pxn
Stk32c
Ralgapa2
Usp33
Serinc5
Scyl2
Coro1b
Edem1
Zfand1
Castor1
Usp20
BC005624
Drap1
AI837181
Dhx35
Klhl26
Gigyf2
Med16
Atp23
Prr12
Ost4
Ginm1
Tgif2
Dusp3
Rras
Wwtr1
Tfam
Stim2
Pard6g
Jph1
Foxi3
Rnft1
Eloa
Fiz1
Cers4
Zfp524
Mapk13
Trnau1ap
Gpbp1l1
Rhbdf2
Isyna1
Gamt
Eml4
Col5a1
Pias3
Tspan15
Idua
Dgkq
Zfp868
Caprin2
Dnaja2
Snap29
Pi4ka
Atp8b3
Mxi1
Mlf2
Cul7
Myo10
Dsel
Wdr17
Rock1
Rap1gap
Efna3
Arhgef19
Klf11
Ulk1
Wnk2
Shmt1
Wwc2
Ankrd24
Cyhr1
Kifc2
Sipa1
Myh9
Sart3
Iscu
Ninj1
Snx25
Aunip
Mtch2
Pygo2
Pdcl
Adipor2
Ralgds
Prxl2c
Cdk4
Mknk1
Dio3
Brwd1
St3gal1
Axin1
Mtx1
Aip
Tmem134
Sumo3
Abcc4
Fosl2
Pcid2
Cul4a
Lrig1
Zfp318
Yif1b
Myadm
Tmcc1
Tmem126b
Mzt1
Bora
Zfr2
Ptprn2
Epb41l5
Cgn
Pcgf3
Prkra
Tmem59
Tceanc2
Cdkn2d
Rassf8
Tent4b
Trim3
Clcn2
Usp45
Ttc38
Slain2
Ptpn4
Gng8
Slc41a3
Nphp3
Bach1
Snx1
Inafm1
Zfp53
Ncapg
Acvr2b
Il17d
Tpi1
H1f4
H2bc6
Fbxo11
Tle6
Pa2g4
Iqgap1
Gdf6
Bag3
Lrrc27
Usp7
Pgm2
E2f1
Abhd17a
Srebf2
Chid1
Dgkd
Smim20
Tmem177
B4galnt3
Pbld2
Hnrnph3
Ahcyl1
Birc6
Ppp1cb
Por
Sqle
Dennd4a
Nova2
Stom
Prxl2b
Anxa7
Cbfa2t2
Snx6
Stard5
Rex1bd
Ppie
Nkx6-1
Aco1
Tmem86a
Pawr
Sh3bp2
Prr5
Nectin2
Ppp1ccb
Ppp1cc
Gtdc1
Crim1
Zfp516
Nup93
Pacs1
Pcnx4
Gcc1
Raver2
Lrrc3
Hcn2
Fsip1
Etnk2
Sipa1l2
Mxra7
Magi3
Fam177a2
Fam177a
Trim62
Map2k2
Psmc6
Armc5
9130023H24Rik
Map3k14
Smim7
Fam120a
Tbl2
Srd5a1
Nsun2
Pygl
Slc25a1
Neu3
Gls2
Cdh15
Nampt
Kank2
Prkcd
Asb1
Fbxo21
Bcl9
Zfp791
Mob3a
Izumo4
Inpp5k
Slc27a1
Sh2d3c
Lrrc63
Lcp1
Fam20b
Elmo3
Lipt2
Gabrb3
Tpt1
Fbxl15
Nckap5l
Mpp7
Ccser2
Irx2
Ppp1r21
Scpep1
Lrpap1
Hspa12a
Tspan9
Tmeff1
Slc6a3
Psmd12
Cyrib
Mllt10
Kdm2b
Coa7
Stard9
Sbk2
Ccne1
Trp53i13
Tpcn1
P2ry2
Iqcd
Gm12500
Ampd2
Efr3b
Fth1
Vps37c
Tbc1d17
Akt1s1
Rbpms
Cyth1
Arhgap17
Slc17a5
Nbeal2
Cap1
Mphosph6
Stk3
Zfand2b
Marchf2
Nudt7
Ell3
1700030J22Rik
Mafk
Qrich1
Rnf149
Bnip3
Fnip2
Cdk10
Ikbip
Apaf1
Dennd2c
Sypl
Nabp1
Cdkn2aip
Ikzf5
Acadsb
Marchf3
Bpnt2
Gmps
Stx7
Gm10509
Jcad
Fam241a
Xylt1
Slc4a8
Exosc9
Eda
Alg6
Kif1c
Inca1
Megf9
Pmm1
Usp43
Svip
Rasl12
Fbxl3
Fam193a
Polk
Cert1
Zfp507
Rnf31
Psme2
Cd59a
Dnajc21
Cacfd1
Fkbp3
Hlf
Bspry
Aph1b
C2cd4c
Bard1
Tedc2
Atg10
Cnn3
Rab2a
Polr2d
Rwdd3
Ppp4r4
Phldb3
Kiz
Sar1a
Ppif
Npc2
Isca2
Abhd17c
Tmem120b
Pdlim5
Ttc7
Ugp2
Scyl1
Specc1
Slc25a30
Rffl
Lrrc42
Hspb11
Cd38
Mief1
Mtch1
Ilvbl
Spcs3
Cdk20
Creb3l2
Psmb2
Otub1
Vps4a
Rmi2
Sgcb
Paqr8
Igsf3
Bbc3
Zfp512
Rhoq
Mtmr12
Ndrg1
Cfap20
Epb41
Mia3
Kcnh4
Morc3
Abhd11
Rnf38
Atp11b
Slc25a39
Limk2
Slc39a6
Elp2
Ggps1
Arid4b
Dtd2
Serpini1
Pdcd10
Orc4
Mbd5
Rapgef6
Cbl
B4galt1
Hpf1
Eif1ax
Scaf4
Ppp3ca
Lars2
Rpp40
Rngtt
Reep6
Rbm11
Pcsk4
Flt4
Erich2
Ccnh
Apcdd1
Atp13a3
Psmg1
Osbpl1a
Cyth3
Dock6
Ncapg2
Rab11fip5
LOC114841036
Fkbp2
Pus7l
Irak4
Carm1
Mfn1
Styx
Paqr5
Mlxip
Gpatch8
Nub1
Stk24
Pdxdc1
Mpv17l
Klf3
Cbln3
Acvr1b
Scube1
Rusc1
Pfkp
Rasa2
Stn1
Slc1a4
Tcf19
Cchcr1
Snrpd3
Gucd1
Uba3
Ilrun
Pcbp3
Rspry1
Psme3ip1
Itsn1
Cryzl1
Twf2
Map4k2
Itpka
Klhl21
Micu2
E2f3
Eif4ebp2
Lap3
Fam234a
Smarcd2
Pus7
Fam221a
Utf1
Pbx1
Mif
Anapc10
Abce1
Stxbp3
Kbtbd3
Aasdhppt
Myo1d
Kri1
Zbtb7b