ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX735282 | Unclassified
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◣ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Fyco1
Chac1
Calcoco1
Ddx23
9430015G10Rik
Phf12
Scrib
Nudt13
Sspn
Cotl1
Prcc
Nr4a1
Pprc1
Kif2c
Nop14
Grk4
Fbxl18
Dusp2
Ncln
Hsph1
Ap2m1
Htra2
Usp48
Hspa5
Banp
Phb
Tnf
Sharpin
Maf1
Ccl1
Mrpl19
Clpb
Dync1i2
Proser1
Nhlrc3
Vmn2r4
Usp5
Cdca3
Asmt
Snx17
Eif2b4
Dhx33
Phlda1
Fastkd1
Chmp4b
Unk
Mtg1
Arl14ep
Clptm1l
Tmed2
Mrpl44
Psat1
Cpsf1
St3gal2
Rptor
Naa38
Cyb5d1
Trap1
Il2
Wdr70
Tmem101
Ifrd2
Cnot1
Dffb
Cep104
Rcc1l
Krr1
Nedd8
Gmpr2
Dffa
B4galt7
Trp53rkb
Nabp1
Sepsecs
Rpl3
Chchd6
Phf20l1
Sphk2
Rpl18
Timm13
Cwc22
Rpia
Prmt6
Mrpl12
Bicd2
Mrpl39
Ap1g1
Poldip3
5730455P16Rik
Sympk
Foxa3
Gtf3c6
C87436
Ncbp2
0610012G03Rik
Stk25
Opa1
Slc35b4
H4c14
Pigu
Btrc
Atp5o
Nprl2
Cyb561d2
Plaa
Max
Pigq
Rel
Eapp
Trip4
Usp31
Chmp6
Jak2
Vrk1
Actr10
Hspa8
R3hcc1l
Ankle2
Atf6
Ndufc2
Alkbh8
Med6
Scaf1
Mrpl20
Foxj3
Frg2f1
Rdh14
Ssrp1
N4bp2l2
Gatb
Mmachc
Ccdc163
Tbcd
Odc1
Ormdl3
Nup153
Ube3c
Fam227b
Dtwd1
Tmem115
Zfyve19
Dnajc17
Phf13
Dcp1a
Herpud1
Ap5s1
Commd9
Ctu1
Crebl2
Nme1
Secisbp2
Tmem214
Zfp189
Mrpl50
Tex14
Pemt
Katnal1
Oasl1
Trib3
Mapkapk5
Acp2
Atg101
Mrpl21
Ighmbp2
Sec61a1
Tyw3
Cryz
Smarca4
Mrpl1
Dcps
Zfp369
Rbl2
Tmed9
Wdr36
Rps20
Mff
Psmd7
Klhdc4
Calm1
Zfp637
Invs
Erp44
Cstf1
Aurka
Guf1
Slc7a11
Zfp36l1
Snw1
Gsk3a
Clec16a
Eef1a1
Gtf3c3
Pfdn5
Eefsec
Tcof1
Ube2j2
Stau1
Kmt2d
Zmat5
Uqcr10
Med27
Rexo2
Wdr25
Wars
Zfp729a
Ccp110
Rsad1
Ppp2r5b
Mrps33
Cnot2
Snx27
Dhx16
Pabpc1
Ptp4a2
Abcb8
Srp19
Rpp30
Gid4
Gtpbp2
Rad23b
Uqcrh
Lrrc41
H3c14
H3c15
H2ac19
H2ac18
Ctdp1
Asns
Lrrc59
Brca2
Pcbp1
Psmb2
Marchf5
Cpeb3
Trmt44
Tmem11
Capn15
Cep128
Arid1a
Ccdc126
Kbtbd7
Ppih
Rab1a
Get1
Rhot1
Aaas
Zbtb37
Top3b
Gm3448
Gm3417
Pcif1
9030025P20Rik
Mrps15
Tspan4
Rabac1
Polr2l
Mrm3
Glod4
Ints4
Peli1
Bud13
Dus1l
Map1lc3b
Rps21
Dhrs7
Ccpg1os
Ccpg1
Ddx47
Ankrd46
Brd3
Fam53c
Cipc
Grcc10
Agk
Ccdc77
Wasf1
Cdc40
Zfat
Terf2
Lemd2
Rnf123
Ncbp3
Psmb5
Smg8
Srp68
Mcl1
Tbrg1
Poglut3
Lcorl
Cdk9
Tchp
Slc25a32
Dcaf13
Stx18
Rab5c
Gem
H4c12
Pten
Map2k5
Wnk1
Kat7
Cdkn2aipnl
Cenps
Stx16
Lars
Antkmt
Naa15
Slc39a13
Nutf2
Dnajc11
Ubxn1
Pomp
Nbr1
Brca1
M6pr
Mrps25
H2ax
Dguok
Taf5
Zc3hc1
Mars1
Ep400
Exoc2
Bub3
Gne
Mfn2
Nfkb1
Tmem127
Ciao1
Mettl15
Ulk2
Borcs7
Cops8
Pigg
Cnih4
Nelfb
Iars
H1f4
Sp1
Nfat5
Eif2b5
Ufl1
Med4
Vps50
Pdia6
Scfd1
2210016L21Rik
Bod1
Slc27a4
Ptcd3
Polr1a
Cops7a
Ints14
Ubox5
Fastkd5
Dpagt1
2700062C07Rik
Naa60
Fbxo15
Timm21
Sfi1
Rabl6
Tsnaxip1
Ranbp10
Rnf6
Ttc13
Arv1
Shmt2
Tmed10
Snrpd1
Inpp5b
Btg1
Rbm17
Tmem43
Chchd4
Tsfm
Snrnp27
Eps15
Dhx30
Commd2
Skp2
Lmbrd2
Zbtb17
Sirt2
Nfkbib
H4c18
Gtf2a1
Get4
Fra10ac1
Nol10
Pxk
Znrd1as
Znrd1
Eif4ebp1
Bod1l
Srrd
Hps4
Ppp1r15b
Ube4a
Rab30
Hnrnpa2b1
Cbx3
H2bc21
H2ac21
H2ac20
Drg2
Ptrhd1
Cenpo
Ythdf2
Bcat1
H1f2
Mettl25
Ccdc59
Dmap1
Coq5
Ints9
Hmbox1
Eif2b3
Cluh
Yars
S100pbp
Mrps35
Ldah
Wdr61
9130401M01Rik
Vamp1
Trmt12
Adck1
Aurkaip1
Ciao3
Rprd2
Wdr4
Pdcd1
Ifrd1
Gmfb
Ncdn
AU040320
Cnot10
Kmt2e
Zc3h6
Retsat
Elmod3
Spty2d1
Lancl2
Trmt10a
Mttp
Map3k4
Gfus
Cdk5rap2
Csnk1a1
Nelfa
Rad50
Clpp
Zfp661
Eif3g
Kpnb1
Fam193a
Nup54
Cul2
Ndufs4
Leng8
Rps27l
Rpl31
Tbck
Aimp1
Nudt15
Nop16
Higd2a
Napepld
Rps8
Pdcd7
Btbd8
Smn1
Ubqln4
Lamtor2
Inpp5k
Slc35a1
Mrpl58
Trmo
2610001J05Rik
Gtf2h3
Eif2b1
Dnajb9
Chpf2
Lrif1
Trdmt1
Mphosph10
Mcee
Nmt1
Srsf2
Mfsd11
Dnttip2
Dnajc16
Tmem94
Man1b1
Zdhhc3
Exosc7
Gas2
Srprb
Psmd12
Taco1
Tut1
Aarsd1
Zzef1
Cyb5d2
Gspt1
Thrap3
Zfyve1
Cdk5
Ndc1
Tomm22
Fam219b
Atp5g2
Zc3h4
Bms1
Pa2g4
Zfp335
Cep120
Epc1
Ndufb8
Sfxn5
Ttll11
Ogfr
Coa8
Bag5
1190007I07Rik
Rps19bp1
Fbxw8
Taf11
Exo5
Nbas
Dgat1
Ahcyl1
Isy1
Wdr59
Srek1ip1
Cwc27
Wbp2
Exoc7
Thap4
Atg4b
Ndufa3
Ccn4
Zbtb21
Prmt3
Vwa8
Tcte3
Gm3435
G3bp1
Coq9
Ciapin1
Cnot4
Mtrex
Dhx29
Trmt5
Slc38a6
Prkacb
Zfp691
Fan1
Atf4
Eif5
Rfc4
Haspin
Kif13b
Cd274
Arf6
Cited2
Gtf2b
Vta1
Timm44
Klhdc2
Man2c1
Abcf2
Mrps7
Gga3
H4c3
Znfx1
Zfp207
Trpc4ap
Tarbp2
Tmem242
Rad1
Brix1
Ccnl1
Nufip2
Srsf1
Snrpc
Rbsn
Ptcd2
Mrps27
Mkrn3
Wdr34
Rps12
Med7
Alg1
Tatdn3
Nsl1
Itpr1
Zbtb45
Polr2m
Ppp6c
Ndufaf5
Esf1
Dnajb12
Mtmr2
Uchl5
Ro60
Ints3
Dlst
Gtf2f2
Ndufv1
Ddost
Jrk
H3c11
Nsrp1
Gabpb2
Slc33a1
Brf1
Vcpkmt
Atp6v0b
Abcc5
Zfp46
Usp16
Dcaf10
Cd44
Rnf220
Zfp738
Ndufa10
Acsf3
Rabggta
Cpox
Taf1d
4931406C07Rik
Wdr45b
Brpf1
Prpf4
Cdc26
H4c11
H3c3
Rab33b
Chka
Cct4
Ndufs3
Kbtbd4
Ankrd40
Elp6
Mat2a
Ddb1
Snrpd3
Gucd1
Rpl35a
Iqcg
Sec22b
Ranbp6
Mpzl3
Rrp1b
Actb
H4c9
H2bc13
H2ac13
Hnrnpab
Ndfip1
Knl1
Bcl2l13
Psmg3
Gosr1
Togaram1
Klhl28
Rars2
Orc3
Pcbd2
Edem2
Nek9
B4gat1
Vdac2
Zbtb11
Hacd2
Tmem245
Atxn7l2
Tmem260
Cdiptos
Cdipt
Tpgs1
Ndufab1
Lef1
Slc16a1
P4hb
Vps51
Heatr6
Rad18
Zfp317
Hinfp
Psma1
Prkcsh
Ccdc151
Zfp748
Spink5
H4c4
Rps27rt
Rab13
Pex3
Adat2
Tfeb
Foxk2
Zfp706
Ppp1r12c
Xrra1
Spcs2
Dmac1
Tob1
H4bc24
H2bc23
H2ac24
H2ac23
Adprh
Hnrnpa3
Atxn1l
Rpl29
Mterf4
Ap2s1
Polr3a
Rsl24d1
Ndufa9
Notch2
Rdx
Rps7
Atxn2l
Cacybp
H3c13
H2bc18
Atp6v1h
Tab1
Rplp1
Cox7a2
Trak2
Taf8
Fbxo48
Iqsec3
Acadvl
Pcbp2
Eif3d
Mrpl4
Scnm1
Lysmd1
Rpl34-ps1
Rpl34
Srfbp1
Zdhhc1
Tmem248
Mthfd2
Myc
Snrpa1
Prmt5
Gnb2
Smim11
Zpbp
Syt3
Zbtb49
Lyar
Rps29
Chordc1
Rpl13
Kmt2a
Mocs1
Pex11b
Tubd1
Rps6kb1
Fahd2a
Zmynd12
Ppcs
Rfx2
Tiparp
Egr2
Galk2
Cops2
Gars
Snx18
Rbm33
Pole3
4933430I17Rik
Nmnat1
Lzic
Rbbp5
Pou2af1
Ubc
H2bc12
H2ac12
Pdia3
Catsper2
Dido1
Gid8
Bola3
Sar1b
Lman2
Rint1
Tpr
Odr4
Coil
Mrps10
Ipo11
Ttc4
Usp30
Hilpda
Nploc4
Rpl27a
Xpnpep3
St13
Tmem250-ps
Ndufs7
Pigl
Ncor1
Adrm1
Pnisr
Nfil3
Vcpip1
Usp35
Kctd21
Dctn2
Txnrd2
Comt
Ipo13
Idh3b
Slc39a9
Erh
Snrpf
Sppl2a
Gpn3
Fam216a
Epn1
Nudt9
Fancd2
Emc3
Rbm48
Pex1
Pex14
Nudcd3
Dnlz
Rbm39
Sde2
Ggps1
Arid4b
Sass6
Fbxw2
Cwc25
Mnat1
Taf2
Cpped1
Zhx1
Stoml2
Trmu
Zfp383
Tti2
Larp4
Dpy19l4
Aasdh
Champ1
Smarcal1
Napg
Coq2
Tsc22d2
Ints5
Parp2
Mrps23
Chd1l
Sdf2l1
Mdh1b
Fastkd2
Dnaja1
Mtf2
Ddx39b
Med17
Sgms1
Rpl28
Dusp12
Tmem147
Exd2
Fut8
Zcwpw2
Azi2
Secisbp2l
Gbe1
Mob1b
Mrpl40
Hira
Sf3a3
Nup155
Tbp
Prr14l
Clp1
Aldh18a1
Slain1
H3f3b
Adnp
Mterf1b
Eif4e2
Ube2d3
Susd6
Rpl21
Fbxw11
Nip7
Cog8
Exoc6b
Atad5
Nsa2
Gfm2
Ccz1
Gabpa
Atp5j
Cbll1
Ncl
Ddx56
Dhodh
Zfp740
Rpl36al
Mgat2
Snrnp200
1810024B03Rik
Zscan12
Mtx3
Ints12
Gstcd
Rps19
Tefm
Eef1akmt4-ece2
Eef1akmt4
Alg3
Tex2
1110038F14Rik
Mrpl42
C030006K11Rik
Gapdh
Washc4
Mettl9
Tor1aip2
Tor1aip1
Utp14b
Acsl3
Ccdc174
Siah2
Nudt5
Cdc123
Polr1b
Triap1
Gatc
Serbp1
Pafah2
Ippk
1110004F10Rik
C1qbp
Tars2
Trub1
Sugt1
Sil1
Tonsl
Chchd1
H4c17
Kmt5b
Kansl2
Srrm2
Mapkbp1
Rbm25
Adprhl2
Dtd2
Fam149b
Ecd
Sf3b2
Ndufa6
Jtb
Cnot8
Dimt1
Trappc8
Minpp1
Wdr53
Fbxo45
Shq1
Rnf113a2
Ubb
Srsf5
Eef2
9530077C05Rik
Lgals8
Naxe
Pex12
Gtf3c4
Ddx31
Enc1
Smndc1
Mtx1
Tbc1d7
Tbl1xr1
Tmem222
Ndufaf1
Cdk8
Bub1b
Ubac2
Heatr5a
Irf2bp1
Rpl23a
Pbld2
Hnrnph3