ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9144817 | 3T3-L1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◣ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Errfi1
Polr2a
Arf6
Ier3
Flot1
Cxcl1
Mt1
Egr1
Zyx
Eif1
Id3
Cwc22
Dusp1
Vcl
Actg1
Fos
Atf4
Sdc4
Ddx5
Cep95
Klf7
Actb
Junb
Mat2a
Hspa8
Fth1
Hnrnpa2b1
Cbx3
Mt2
H4c18
Mdm2
Ier2
Ppp1r10
Mrps18b
Ptp4a1
Btg2
Id1
Nfkbiz
Vdr
Cebpd
Tsc22d1
Nr4a1
Sik1
Zfand5
Raly
Eef1a1
Cited2
Tuba1c
Coq10b
Ppia
Palld
Thbs1
Emd
Ptgs2
Dusp5
Adamts1
H4c3
Rgs2
Dstn
Srsf5
Myl12a
Zfp36
Ubb
Ubc
Eapp
Cebpb
Itga5
Ccl2
Sgk1
Fn1
Ccl7
Fam53c
Myh9
Vim
H3c14
H3c15
H2ac19
H2ac18
Ccn1
Nfkbia
Cdkn1a
Ccnl1
Btg1
H3c11
Col4a2
Col4a1
Litaf
H3f3b
Ctnnb1
Poldip3
Pdlim5
Tpt1
Tmem123
Acta2
Rap1b
H4c14
Ifrd1
Hspa5
BC005537
Itgb1
Herpud1
Cdc42
Srsf7
Ppp1r12a
Sqstm1
Prnp
Prn
Tra2a
Mcl1
Dnajb4
Gtf3c6
Ppp1r15a
Plekha4
H4f16
Clec2d
Uap1
Cirbp
Stat3
Rnf19b
H2-L
H2-D1
Tpm4
Slc38a2
H4c4
Serpine1
Srsf3
Rplp0
Jun
Pdlim7
Pakap
Rhob
Cfl1
Ywhaz
Lcn2
Crem
Fstl1
Egr2
Fus
Plk2
Rheb
Ddit4
H3c2
Calu
1810013L24Rik
Ube3b
Kctd10
Slc25a3
Amn1
Lmna
Srsf6
F3
Elovl5
Tiparp
Top1
H3c4
Dnaja1
Cpeb2
Zfp36l1
Tmsb4x
Msrb3
Cald1
Fubp1
Filip1l
Spindoc
Dnajb1
Ier5
Slc35e3
Tada3
Arpc4
Fosb
Glrx
Klf6
Lima1
Tob1
Rras
Phlda3
Rnf34
Ddx3x
H4c9
Rbks
Babam2
Rpl10
Txnip
Ftl1
Wdr1
H3c6
Csrnp1
Hsp90aa1
Arl4d
Rsrc2
Kntc1
Kmt2e
Atp6v0c
Rab7
Nabp1
Egr3
Efcab2
Zfp36l2
Taf13
Cstf3
Rpl3
Timp2
Chchd2
Fkbp5
Actr3
Selenop
Hif1a
B2m
Oat
Nfat5
Yeats4
Slc25a4
Hnrnph1
Wsb1
Rnft1
Klf2
H4c17
Irs2
Gadd45g
Sptan1
Pitpna
Aff4
Esyt2
Mob3a
Izumo4
Rbm39
Nagk
Pnrc1
Cct2
Prkar1a
Rgl1
Arpc5
Rsu1
Hsp90ab1
Lrrc8a
Pkd1
Rpl10a
Tpm1
Gpx4
Pabpc1
Sik2
Zfp869
Adnp2
Sfpq
Smim10l1
Slc2a1
Niban2
Rps20
Rab11b
Btaf1
Mbnl1
Sart3
Iscu
Ell2
Hspa9
Opa3
H3c10
Aars
Mafk
Ncl
Nfe2l2
S100a10
Rhoj
Ptpn2
Rpl9
Lias
Ptma
Aff1
Ints6
Ppp1r2
Cnn2
Fosl2
Gem
Sub1
Larp4
Srsf2
Mfsd11
Ctsl
Ugdh
Maff
Slc3a2
Eef2
Sox9
Etf1
Ctnnd1
Rnd3
Srf
Chac1
Tuba1a
Odc1
Usp38
Hipk3
Sf3b1
Gapdh
Cltc
Homer1
Ranbp2
Gm3448
Gm3417
Tcte3
Ermard
Eif4g2
Zfp644
Ube2h
Id2
Calm1
Resf1
Ppp2cb
Cdk12
AW549877
Eif4a1
Bach1
Pcif1
Ywhag
H2-K1
Nup62
Il4i1b
Atf5
Prrc2a
Ubald1
Slc35a4
Apbb3
Mknk2
Dgat1
Prdx1
Calr
Ero1a
Ahnak
Txndc11
Golph3
Gpx1
Jak1
Hnrnpab
Tob2
Pdk4
Arglu1
Znfx1
Trib1
Tra2b
Mideas
Tmem175
Gak
Asns
Myl6
Slc25a25
Tmed5
Ccdc18
Sbf2
Ulk2
Eif5
Serinc3
Parva
Erdr1
Map3k6
Pole4
Trib3
Sp1
Urgcp
Kdm7a
Uhmk1
Fermt2
Pfn1
Malsu1
Klf9
Zeb1
Rabgef1
Sra1
Hdlbp
Saraf
Eprs
Atf3
Hexim2
Ddx39b
Por
Zfc3h1
Thap2
Zfp1
Csnk1a1
H4c1
Arf4
Tpp2
Ube2j1
Rasa3
Arih1
Scaf1
Alyref2
Sesn2
Cul1
Coro1c
Zfp655
Cry2
Ifi211
Rps6
Ppard
Rnf10
Tcf25
Pak2
Dock9
Lpp
Slc25a5
Ercc5
Ndel1
Hspa4
Zmat1
Pafah1b2
Sik3
Eif2s2
H1f4
Nptn
Irf2bp2
Gsto1
B3gnt2
Tubb6
Rybp
Calm2
Aven
Nars
Rbm3
Fgfr1
Pgap2
Nup98
Eif3c
Srrm2
Ankrd11
Sat1
Epc1
Flcn
Slc7a1
Gls
Aplp2
Selenok
Nfil3
Mlxip
H4c8
Zc3h12a
H3c13
H2bc18
Usp16
St7
Glul
Son
Gart
Tmem87b
Rpl12
Lrsam1
Gadd45b
Pdha1
Birc3
Phc2
Zfp330
Zfp143
Pim3
Gpat4
Med21
Il6
Rps27rt
Rab13
Cdc37l1
Fosl1
Rock2
Adrm1
Zswim6
Thbd
Cd44
Enah
Rab21
Nr4a2
Baiap2
Hnrnpc
Rpl19
Pik3r1
Hmga2
Rpl22l1
Xrcc4
Tmem167
Hmgcr
Bclaf1
Lrrc58
Ptms
Rbbp6
Taf1d
4931406C07Rik
Lamp2
Zfp963
Rrn3
Rpl15
Nkiras1
Dhrs9
Pcbp1
Insig1
Myc
Plekho2
Mnt
Mapk1
Slc39a14
Prune2
Pafah1b1
Hnrnpdl
Fmc1
Rpsa
Enoph1
Uspl1
Cap1
Morc2a
Sipa1l1
Setd5
Adprh
Mapkapk2
Igfbp7
Hsd17b12
Paxip1
Arf1
Slc7a5
Flna
Cd248
Peak1
Hmg20a
Hexim1
Id4
Ubr5
Itprip
Taf4
Rpl17
Bcl7b
Rcn2
Ccng1
Abracl
Hnrnpa1
Cbx5
Wbp11
BC049715
Angptl4
Wnk1
Tceal8
Ep300
Cst3
Fasn
Arl2bp
Srxn1
Agbl5
Twf1
Frs2
Pkm
Bri3
Pcf11
Pskh1
Mob4
Nfkb2
Tnfaip2
Hsd17b7
Csf1
Rps12
Cul3
Rsrp1
Zfp207
Caprin1
Tspyl2
Slc9a1
Pcnp
Tnfrsf1b
Sertad1
Lox
Serbp1
Trp53inp1
Sipa1l2
Nrbp1
Rccd1
Pdcd6ip
Dot1l
Camk2d
Wdr26
Adpgk
Sugct
Mplkip
Tuba1b
Piezo1
Hnrnpa0
Rab22a
Kctd5
Brwd1
Ccnl2
Hnrnpa3
Ahctf1
Plec
Tax1bp1
Cldn12
Serpinh1
Bag3
Slbp
Rab43
Csde1
Dhx9
D5Ertd579e
H2bc4
H2ac6
Ets2
Kif5b
Elk4
Dcbld2
Ttpal
Cxcl5
Zbtb37
Eif3a
Arpc2
Fam76a
Acyp2
Styxl1
Mdh2
Brd4
Mtch1
Gorasp2
Usp53
Nufip2
Rpl38
Zfp131
Adnp
Trip6
Arhgap23
Ddx59
Eif4g1
Rnf19a
Actn4
Tatdn2
Csrnp2
Mocs3
Dpm1
Tanc1
Actn1
Zbtb16
Atp2a2
Nsun6
Arl5b
Stk40
Socs3
Ccnt1
Creb1
Zfp568
Patl1
Ctnna1
Mrpl33
Gramd1a
Txnrd1
Phlda1
Pdss2
Cpsf6
Cyth2
Itgav
Ddx50
Cbx4
Arhgap10
Mbnl2
H3c3
Gars
Oaz1
Exoc5
Ap5m1
Hspe1
Hspd1
Kctd18
H2bc3
Mpp7
H3f3a
Arl8a
Ilf2
Zfp706
Clk1
Zfp948
Rfx3
E4f1
Ppp1r15b
Net1
Heg1
H2bc21
H2ac21
H2ac20
Sp3
Crk
Rpl24
Trp53inp2
Map4k3
Rmi1
Hnrnpk
Arl8b
Rps10
Nrbf2
Hmgb2
Zc3h15
Etnk1
Foxk1
Ldha
Mthfd2
Bcl6
Pitrm1
Smg5
Dnaja2
Tpst2
Med14
Zcrb1
Pphln1
Nars2
Pbld2
Hnrnph3
Phf20l1
Brd1
Zfp866
Rab5if
Azin1
Tyw1
Sbds
Skp1
Ctdsp1
Mapre1
Gmeb2
Ucp2
Strap
Atp6v0d1
Ptpn23
Ddit3
Rpl23
Trim39
Rfx1
Raph1
Axin1
Cttnbp2nl
Rpl18a
Il6st
Fkbp1a
Chrac1
Cul5
Ppp2ca
Znrf1
Ccny
Ndufs1
Eef1b2
Usp36
Dnajb2
Helz2
Txnl1
Twist2
Senp2
Frmd6
Tpcn2
Ccdc107
Ddx17
Rexo2
Eif4h
Lims1
Map4k4
Unk
Vegfa
Gstp1
Fam53a
Usp7
Ube2d3
Lonp1
Catsperd
Syap1
Knl1
Pih1d1
Aldh16a1
Relb
Tank
Bzw1
Osmr
Anxa1
Yaf2
Zfp868
Srsf1
Luc7l2
Cdr2l
Ptpn11
Fndc3b
Fau
Mrpl49
Psme3
Setd2
Rbm15b
Polr2m
Topors
Smim27
Capza2
Atp13a3
Rft1
Ptx3
Tm9sf3
Med13
Tmed10
Srrd
Hps4
Galnt2
Tnc
Flnc
Fscn1
Alas1
Ccnyl1
Fdx1
Usp32
Rhoc
Csnk1g2
Psmd14
Mylip
Noct
Epc2
Atxn2
Rpl27a
Rab8a
Ap1g1
Slc10a7
Rbmxl1
Midn
Pcna
Cnbp
Fbxo4
Utp4
Derpc
Chtf8
Tm9sf4
Ssu72
Trim24
Slc25a33
Npm1
Hmgn1
Tgfbr3
Snapc1
Fam133b
Dusp11
Vamp2
Smad1
Rnf111
Cops3
Khdc4
Vapa
Plin4
Map3k20
Pdcl3
Per1
Cct8
Seh1l
4930453N24Rik
Rrbp1
Hmgxb3
Zfr
Zc3h6
Rps3a1
Pigl
Ncor1
Rplp1
Jpt1
Vps37a
Cnot7
Nsd3
Aen
Tmem120a
Phykpl
Chuk
Atp6v1h
Slc20a1
Cebpg
Myo1e
Susd6
Atl2
Nedd9
Bcl2l13
Ythdf3
Mrps18a
Anxa5
1810062G17Rik
Pom121
Kpna1
Mpc2
Dcaf6
Arpc1b
Zrsr2
Pdrg1
Pja2
Abl1
Map2k2
H1f3
Nsrp1
Eif4ebp1
Pdp1
Arf3
Lgr4
Twsg1
H3c7
Dynll1
H2bc9
Ube2d2a
Rabgap1
Steap2
Gpatch2l
H1f0
Birc6
Hnrnpm
Arid5a
Cox18
Tle4
Tmsb10
Rab1a
Rps23
Gtf2a2
Lamc1
Med13l
G3bp1
Rraga
Nrip1
Rnf214
Pcsk7
Map1lc3a
Atl3
Bdnf
Acbd3
Grcc10
Arl15
Rps28
Ndufa7
Gnai3
Slc35e1
D8Ertd738e
Rab14
Zfp281
Cdc42ep4
H1f2
Aacs
Stk24
Gtf2b
Lin7c
Wls
Atxn7l3b
Rbbp7
Neurl4
2810408A11Rik
Wdfy1
Dnm1l
Trappc6b
Rlim
Lmod1
Marchf7
Taf15
Rrp8
Ilk
Tgfbr1
Bcar1
Lix1l
Serinc1
Kpna4
Ptges3
Csrp1
Erap1
Abtb2
9530077C05Rik
Pnp
Anln
Mettl23
Lta4h
Dazap2
Arcn1
Stk35
Zswim7
Ttc19
Npepps
Gprc5b
Selenot
Ubn1
Glyr1
Smurf2
Gxylt1
Serpinb6a
Btf3
Ripk1
Myo1d
Naif1
Mmadhc
Trir
Zfp236
Mfsd5
Snu13
Elavl1
Prdm10
Atp13a1
Ppm1a
Rps8
Gng12
Nt5c2
Tmem116
Erp29
Mrpl17
Timmdc1
Fabp4
Col1a1
Tmem248
Zfp62
Spag9
Zfp623
Ext1
Bid
Nkrf
Tcaf1
Agpat4
Slc5a3