ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620287 | NIH/3T3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◣ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Sspn
Pgk1
Errfi1
Egr1
Actg1
Ccn1
Thbs1
Serpine1
Actb
Ccn2
Plk2
Ubc
Dusp1
Ptgs2
Nr4a1
F3
Flnc
Dusp5
Oasl1
Fos
Asmt
Lox
Vim
Phlda1
Vmn2r4
Gm13285
Gm13290
Gm13289
Gm13288
Ier5
Gadd45g
Sgk1
Ier2
Prkca
Fn1
Ifrd1
Btg2
Msmo1
Junb
Acta2
Fosl2
Ier3
Id3
Zc3h6
Trib1
Myh9
Id1
Frmd6
Klf6
Zfand5
H3f3b
Actr3
Csf1
Eif1
Ccnl1
Cdca7
Mat2a
Dnajb4
Fubp1
Jun
Rnft1
Tob1
Mmaa
Itga5
Vcl
Lbh
Ddx1
Plcb1
Sfi1
Nrbp1
Fer
Hmgcr
Mt2
Mcl1
Mtdh
Tpm1
Egr2
Tubb6
Rel
Flad1
Ncbp2
0610012G03Rik
Palld
Sf3b1
Rps6
Itgb1
Esyt2
Uhrf1bp1l
Atf4
Camk2d
Arpc2
Rheb
Cdkn2aipnl
Rnd3
Rraga
Noct
Klf7
Rnf11
Ccdc88a
Mideas
Gm13275
Zfp207
Ahnak
Egr3
Ttc4
Kansl2
Prss23
Btg1
Srxn1
Klf10
Taf1d
4931406C07Rik
Mtf2
Calm2
Gm13287
Fads2
Gm3448
Gm3417
9030025P20Rik
Rtn4
Tjp2
Phlda3
Arc
Dgat1
Tnfrsf12a
Wtip
Tcte3
Ermard
Zscan21
Epb41l2
Cldn12
Tada1
Wdr1
Jmjd1c
Lurap1l
Cltc
S100a6
Nabp1
Ywhag
Mterf1b
Zfat
Gm3435
Top1
Lmna
Tnc
Polr2a
H3c14
H3c15
H4f16
H2ac19
H2ac18
H4c3
H4c18
H4c14
Cxcl1
Cwc22
Ddx5
Cep95
H1f2
Mt1
H4c4
H3c6
Fth1
H1f4
Eapp
Eef1a1
Hnrnpa2b1
Cbx3
H3c13
H2bc18
H3c11
Fyco1
Srsf7
Ppp1r10
Hspa8
Hspa5
Arf6
Rpl3
H2bc6
Mrps18b
Ctnnb1
Nfkbia
Tsc22d1
Ppia
Ubb
Slc35e3
H4c17
Poldip3
Raly
H2bc21
H2ac21
H2ac20
Fam53c
Gtf3c6
Mdm2
Ddit4
Sp1
Cited2
Ftl1
H4c9
Srsf2
Mfsd11
Zyx
Adamts1
H4c8
Chac1
H3c4
Calm1
Fus
Zfp36l1
Rplp0
Sdc4
Cebpd
Sqstm1
H3c10
Slc38a2
Herpud1
Nfkbiz
H3c2
Cirbp
Tpt1
Pnrc1
Prdx1
Unk
H1f3
Ulk2
Scrib
Ppp1r12a
BC005537
Znfx1
Txnip
Zfp36l2
Flot1
Cebpb
Calcoco1
Tuba1c
Uspl1
Srsf5
Odc1
Efcab2
Clec2d
Yeats4
Cdkn1a
Nfat5
Ptp4a1
Pcif1
Rps29
Tuba1a
Sik1
Rbm39
Litaf
H2bc4
H2ac6
H2ax
Srsf6
Dnaja1
Ap1g1
Rps20
Hsp90aa1
Dnajb1
Ddx3x
Pcbp1
Srsf3
Slc25a4
Nudt13
Tuba1b
Slc3a2
Epc1
Tti2
Ddx23
Rhob
Tiparp
Hsp90ab1
H4c11
Tmem123
Banp
Nup62
Il4i1b
Atf5
Timp2
Ints6
Myl12a
B2m
Hnrnph1
Cdc42
Ywhaz
Rgs2
Serinc3
Rptor
Ccl7
Pabpc1
Gorasp2
9430015G10Rik
Zfp869
Gpx1
Eif5
Snx17
Eif2b4
Ccl2
Mrpl44
1810013L24Rik
Taf4
Tra2a
Gtf2b
Pole4
Dync1i2
Cnot1
Zfp36
Dstn
Larp4
Napepld
Rsrp1
Insig1
Eif4a1
H4c1
Smim10l1
Cdk12
Kmt2e
Ncl
Rsrc2
Kntc1
Selenop
Rap1b
Stat3
H3c7
Zfp963
Pdlim5
Emd
Sde2
Coq10b
H2bc13
H2ac13
Aaas
Erdr1
H2-L
H2-D1
Tmsb4x
Phf12
Tmed2
Urgcp
Setd5
Ep400
Hmgb2
Tex14
Amn1
Nfe2l2
Zfp1
Hnrnpab
Hexim2
Chmp4b
H2bc12
H2ac12
Hif1a
Gapdh
Ndufs7
Resf1
Zfp868
Ddit3
Pkd1
Prcc
Crem
Col1a1
Retsat
Elmod3
Ppp1r15a
Plekha4
Mknk2
Slc25a3
H1f0
Zfp143
Zfp655
Wsb1
Rdm1
Tob2
Cxcl5
Gem
Trib3
Rps12
Nufip2
Zbtb37
Eif3a
Mettl25
Ccdc59
H4c2
Eif3c
Eif4g2
Cfl1
Crebzf
Ppp1r2
Gls
Irf1
Opa1
Baiap2
Kmt5b
Adnp
Glul
Slbp
Tra2b
Rpl10a
H4bc24
H2bc23
H2ac24
H2ac23
Pprc1
Pdlim7
Chchd2
Csrnp2
Fam227b
Dtwd1
Usp48
Son
Gart
Snx5
Mgme1
Ugdh
Tmsb10
Map2k2
Wnk1
Sec61a1
Pdss2
Trp53rkb
Rabgef1
Bach1
Arrdc2
Ctsl
Rnf19b
Atp2a2
Ldha
Slc9a1
Cpsf1
Sptan1
Birc2
Raf1
Grcc10
H2bc15
H2ac15
Eef2
Ptpn2
Csnk1a1
Chrac1
Hmox1
Srsf1
Hnrnpa1
H3c3
Cbx5
Zfp866
Ndel1
Fstl1
Morf4l1
Ddx59
Ptms
Sp3
G3bp1
Map1lc3b
Sfpq
Gtf2a1
Piezo1
Calr
Slc39a10
Ep300
Rock2
Nfyc
Homer1
Kctd5
Ubxn1
Arl14ep
Pcna
Txnl1
Sod1
Eif2b5
Gsto1
Klf2
Ddx39b
Slc2a1
Mbnl1
Txn1
Arntl
Nsrp1
9530077C05Rik
Nedd8
Gmpr2
Pim3
Arih1
Sub1
Dynll1
H4c12
Cpeb2
Taf13
Phb
Hmgn2
Adprh
Pcnp
H2-K1
Gadd45a
Pknox1
Pbld2
Hnrnph3
Dusp2
Vegfa
Aff4
Hipk3
Atp6v1h
Gadd45b
Sppl2a
Ufl1
Selenot
Htra2
Zfp637
Galk2
Wbp4
Elf1
Cops2
Gabpb2
Fasn
Sepsecs
Eif4e2
Sned1
Hdlbp
Lrrc8a
Polr2m
Col4a2
Col4a1
Slc5a3
Mrps6
Rpl9
Lias
Tmem175
Slc25a32
Gak
Dcaf13
Rab5if
Rps3a1
Ets2
Vdr
Pten
H2bc9
Chmp6
Nsfl1c
Hexim1
Npm1
Hnrnpa3
Prrc2a
Parva
Map2k4
Ube2j2
S100a10
Rab11b
Ppm1a
Mtg1
Ifi211
Adpgk
Rpl17
Sik2
Letm2
Ubald1
Gpx4
Rmi1
Hnrnpk
Pigl
Ncor1
Atp6v0c
Pafah1b1
Atf1
Scaf1
Rfx3
Hspa4
Dusp11
Ppp6c
Ptma
Ap2m1
Ranbp2
Cct8
Tbcd
Ndfip1
Ccng1
Sharpin
Maf1
Sec62
Dpy19l4
Wdr70
Mmadhc
Rabl6
Arl8b
Psmd7
Pnp
Kat7
Eci1
N4bp2l2
Btaf1
Rab1a
Lrif1
Brwd1
Adnp2
Tut7
P4ha1
Mrpl19
Dcp1a
Spindoc
Atp5g2
Rps27rt
Rab13
Zcwpw2
Rnf10
Oat
Cct2
Azi2
Socs3
Paxip1
Tmem87b
Clk1
Cox20
Rbks
Babam2
Tcf25
Fbxl3
Cap1
Rpl41
Saraf
Hspa9
Aacs
Rfc4
Jak1
Mterf1a
Gars
Calu
Tab1
Angptl4
Nop14
Grk4
Jund
Rab7
Trmt44
Ddb1
Rps8
Btrc
Ncln
Crebl2
Uhmk1
Phf20l1
Ndufa9
Rab33b
Ctdp1
Ankrd11
Ttc41
Hsp90b1
Elk4
Anln
St3gal2
Ywhae
Filip1l
Smg5
Fam43a
Arl15
Rrn3
Rdh14
Mrpl39
Chka
Tubb4b
Atf6
Srrm2
Ndufs4
Ppp1ccb
Ppp1cc
G3bp2
Knl1
Cct4
Rnf34
Snx18
Rpl5
Serbp1
Dffa
Degs1
Gstp1
Fem1b
Irs2
Fitm2
Stau1
Luc7l
Cul1
Notch2
Secisbp2l
Gmfb
Fosb
Ccnt1
Arf1
Cotl1
Pitpna
Adrm1
Sugct
Mplkip
H3f3a
Rpl38
Puf60
Rplp1
Lrp6
AW549877
Rprd2
Cd164
Prnp
Prn
Med6
Arf4
Amdhd2
Zdhhc1
Ndufaf5
Esf1
Anapc5
Srp19
Nubp1
Nrf1
Tsnaxip1
Ranbp10
Ilf2
Sox9
Relb
Ppp4r3b
Pdia3
Catsper2
Nme1
Mif
Aven
Ing1
Mylip
Ero1a
Atg10
Tbc1d13
Klhl24
Tada3
Arpc4
Mapkbp1
H2bc8
H2ac8
Gas1
Ube2d3
Prkar1a
Kif2c
Pdcd7
Kat6a
Twf1
Ppp2cb
Rras
Cald1
Atp5g3
Fbxl18
Trmo
Alyref2
Jpt1
Slc12a4
Tmf1
Susd6
Washc4
Rbl2
Rad54l2
Csgalnact2
Pkm
Ndufb8
Lgals1
Plec
Gm13279
Gm13278
Pigq
Ahcyl1
Tmem248
Terf2
Lima1
Trdmt1
Tpm4
Cnbp
Birc6
Atp5o
Rab43
Lnpep
Zfp959
Snrpd3
Gucd1
Gatb
Dnajb12
Zfp644
Aff1
Trir
Ier5l
Bcl7b
Gmeb2
Peli1
Cenps
Rpl23
Gspt1
Flcn
Smg8
Rbm3
Kpnb1
Eprs
Zswim6
Pigu
Gnas
Rbm33
Oga
Mthfd2
Arl4d
Usp16
Ankrd17
Usp38
Ube2h
Psmb2
Rcn2
Hnrnpdl
Chordc1
Rpl13
Malsu1
Dennd6a
Tm9sf3
Drg2
Cpsf6
Nars
Mapk1ip1l
Copb1
Zc3h11a
Zbed6
Caprin1
Bclaf1
Arl2bp
Pomp
Ndufs3
Kbtbd4
Ahctf1
Seh1l
Ifrd2
Dip2b
Ube3b
Kctd10
Get4
Slc16a1
Ppp2r3a
Hnrnpm
Rgl1
Hmgn1
Fmc1
Arpc5
Zc3h4
Zfp706
Zmat1
Ppp1cb
Aasdh
Bcl2l13
Rubcn
Rab21
Polg2
Ube2z
Marf1
Trap1
Nsun6
Arl5b
Dhx33
Slc7a1
Krr1
E4f1
Slc7a5
Mapk1
Ccdc107
Mff
Hnrnpc
Pskh1
Eif4ebp1
Cul5
Enc1
Trim39
Marchf5
Cpeb3
Nagk
Ube2l3
Tpp2
Pim1
Zfp119b
Sun2
Pold3
Tsfm
Arid5a
Snrpc
Rpl15
Nkiras1
Vamp2
Rbm17
Oaz1
Dnttip2
Csrnp1
Bud13
Caprin2
Lemd2
Pradc1
Get1
Cct7
2610001J05Rik
Csde1
Tmem39a
Sart3
Rbbp6
Iscu
Dars
Nptn
Ddx17
Srcap
Smad1
Psmd12
Fam193a
Dhx16
Pdk4
Niban2
Wtap
Usp53
Txndc11
Birc3
Srek1
Smarca4
Matr3
Lrrc58
Ell2
Cd248
Creb1
Tmem11
Tmed5
Rpl22l1
Frs2
Cstf3
Ccdc18
Smarca5
Ggps1
Arid4b
Fscn1
Plag1
Ube2v2
Serinc1
Trp53inp1
Lcn2
Crk
Mtmr10
Por
Plekho2
Dnaja2
Ube2g1
Hsph1
Trp53rka
Tax1bp1
Rnf111
Map3k6
Fastkd1
Ubap2l
Nup153
Aars
4933434E20Rik
Tmem183a
Ppp2ca
N6amt1
Pafah1b2
Mrpl21
Ighmbp2
Blmh
Trrap
Ssbp1
Mmp2
Timm13
Pdp1
Dynll2
Rpia
Proser1
Nhlrc3
Mob1a
Kctd20
Ifng
Azin1
Mfsd14a
Clptm1l
Med13
Naa38
Cyb5d1
Ube2d2a
Rpl10
Rab22a
Clk4
BC049762
Tm2d1
Pakap
Sbf2
Rtn3
Fermt2
Bri3
Hbp1
Rhot1
Mtmr2
Rps23
Med7
Lonp1
Catsperd
Dhx9
Rnf7
Luc7l2
Gtf3c3
Paip2
Dmap1
Dido1
Stx16