ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9144815 | 3T3-L1
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◣ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Polr2a
Eif1
Cxcl1
Klf7
Mt2
Zyx
Dusp5
Ddx5
Cep95
Errfi1
Hnrnpa2b1
Cbx3
Mat2a
Hspa8
Mt1
Raly
Atf4
Nfkbiz
Zfand5
Dusp1
Cwc22
H3f3b
Cebpd
Actg1
Vcl
Fos
Tob1
Tuba1c
Fth1
Id3
Dstn
Junb
Ppia
Dnajb1
Tpt1
Sdc4
Ier3
Flot1
Srsf7
Fam53c
Ppp1r10
Mrps18b
Egr1
Slc35e3
Sik1
Emd
Ubb
Nfkbia
Adamts1
Coq10b
Ftl1
Id1
Arf6
Ptp4a1
Vim
Cdkn1a
Palld
Mdm2
Btg1
Cirbp
Ier2
Cebpb
Tsc22d1
Sqstm1
Dnaja1
Cfl1
H4c3
Top1
Eef1a1
Thbs1
Zfp36l2
Oat
H3c14
H3c15
H2ac19
H2ac18
Ctnnb1
Hspa5
Rgs2
H4c18
Ywhaz
Btg2
Serpine1
Litaf
Mcl1
Zfp36
Crem
Ets2
Rplp0
Egr2
Myl12a
Actb
Slc25a4
Ubc
Pdlim5
Rnf19b
H4f16
Timp2
Tiparp
Tmem123
Clec2d
Rabgef1
Ifrd1
Fosb
Fus
Itgb1
Lmna
Ddit4
Itga5
Cited2
Ddx3x
1810013L24Rik
Serinc3
Stat3
Acta2
Csrnp2
H2-L
H2-D1
Rap1b
Atp2a2
Nabp1
Srsf5
Ppp1r12a
Wsb1
Ulk2
Arl4d
B2m
Hif1a
Phlda3
Hsp90aa1
Rhob
Mknk2
Rnf34
BC005537
H1f4
H2bc6
H3c11
Hnrnpab
Cpeb2
Ccnl1
Ugdh
Pnrc1
Tpm1
Zfp36l1
Ccn1
Sgk1
Eif4a1
Plk2
Rnft1
Pdlim7
Egr3
Selenop
Gpx1
Rps29
Hipk3
Gnas
Ccl7
Col4a2
Col4a1
Pim3
Ccl2
Arih1
Dnajb4
Nr4a1
Srsf3
Tra2a
Ppp1r2
Tubb6
Jun
Actr3
Zswim6
Odc1
Fstl1
Homer1
H4c14
Taf13
Amn1
Filip1l
Ell2
Srsf2
Mfsd11
Srsf6
Kmt2e
Larp4
Hsp90ab1
Slc25a3
Klf6
Eapp
Slc2a1
Fermt2
Tmem175
Gak
H3f3a
Myh9
Pcif1
Gadd45g
Vdr
H2ax
Prdx1
Gls
Tmsb4x
Tra2b
Ndel1
Col1a1
Piezo1
Ldha
Map3k6
Pakap
Rbm39
Dynll1
Gstp1
Bach1
Setd5
Rbm3
Gem
Sptan1
Gpat4
Ints6
Pabpc1
Rheb
Cdr2l
Slc38a2
Irf1
Ube2h
Pkd1
H2-K1
Tpm4
Fubp1
Herpud1
Plec
Aplp2
Parva
Creb1
Socs3
Spindoc
H4c9
Ptgs2
Ppp1r15a
Plekha4
Baiap2
Rock2
Rpl3
H3c10
Taf4
Poldip3
Sod1
Gadd45b
Gpx4
Phlda1
Slc3a2
Plekho2
Rab5if
Sp1
Ppard
Tuba1b
Slbp
Fscn1
Ptms
Slc5a3
Mrps6
Calm2
Gtf2b
Chchd2
Igfbp7
Cdc42
Cdk12
Map7d1
Ccng1
Rab7
Calm1
Zfp869
Hnrnph1
Myl6
Gsto1
H4c4
Ddit3
Jak1
Cd248
Fkbp5
Rsrc2
Kntc1
Rsrp1
Csrnp1
Niban2
Lima1
Sat1
H3c4
Btaf1
Id2
Elovl5
H3c6
Efcab2
Map2k4
Atf3
Arrdc2
Hmox1
Nup62
Il4i1b
Atf5
Cstf3
Zfp143
Gapdh
Lbh
Aff1
Irs2
Zfp644
Glul
Eef2
Lrrc8a
Tada3
Arpc4
Ctsl
Slc6a8
Proser3
Hspb6
Calr
Fasn
Fn1
Sf3b1
Arf4
Cbx4
Vasn
Csf1
Arid5a
Pcna
Sub1
Prrc2a
Hspa4
Aff4
Csnk1a1
Erdr1
Tmsb10
Pcf11
Tmed5
Ccdc18
Bcl10
Txnip
Rps20
Sox9
Serpina3g
Hmgcr
Ube3b
Kctd10
Chka
Irf2bp2
Ncl
Rps12
Mob3a
Izumo4
Hexim1
Uap1
Ppp2cb
Hdlbp
Calu
Rras
Peli1
Hnrnpdl
Rybp
Enoph1
Ing1
Rrbp1
H1f2
Ankrd11
Mapkapk2
Ptpn2
Med13
H4c8
Lgals1
Pitpna
Zfp1
Slc9a1
Ier5l
Etf1
Chd4
Nfat5
Sde2
Klf2
Ywhag
Opa3
Malsu1
Fosl2
Esyt2
H4c1
Cltc
Relb
Caprin2
Plk3
Sfpq
Wdr1
Eif5
Slc7a5
Insig1
Socs1
Tomm34
Prkar1a
Golph3
Nt5c2
Scaf1
Gas1
Trp53inp2
Nedd9
Rhoj
Jpt1
Rpl19
B3gnt2
Ccnyl1
Trib1
Dgat1
Ier5
Ppm1a
Ubald1
Srf
Eif4g2
Cul1
Ube2d2a
Znrf1
Zfp963
Txndc11
Nfkb2
Cnn2
Efnb2
Gmeb2
Cald1
Map1lc3a
Midn
S100a10
Ifi211
Eif4g1
Rnd3
Ero1a
Nptn
Cap1
Smad1
Usp38
Apbb2
Lgr4
Tuba1a
Mylip
Rgl1
Arpc5
Klhl21
Znfx1
Rpl22l1
Dcbld2
Hnrnpa0
Dot1l
Wnk1
Oaz1
H3c13
H2bc18
Eprs
Pafah1b2
Sik3
Sik2
Smim14
Gorasp2
Rpl10a
Sned1
Pfn1
Spry2
Med14
Epc1
Pafah1b1
Ube2j1
Paxip1
Phc2
Birc3
Msrb3
Bzw1
Nrip1
Mbnl1
Id4
Ifnar1
Zfp655
Slc16a1
Azin1
H3c2
Hnrnpa1
Cbx5
Dlgap4
Glrx
Tgfbr3
Nrbf2
Retsat
Elmod3
G3bp1
Nfe2l1
Wbp11
BC049715
Ctnnd1
Clic4
Jdp2
Hnrnpa3
Clk1
Ucp2
Zmat1
Shld2
Glud1
Slc39a10
Vegfa
Hexim2
Wbp4
Elf1
Cct2
Tmem87b
Ranbp2
Kpna4
Ppp2ca
Tnfrsf1b
Mafk
Eif3c
Snx5
Mgme1
Pdss2
Slc25a25
Nfe2l2
Rpl10
Vamp2
Ubn1
Glyr1
Rasa3
Ube2v2
Kdm7a
Slc25a5
Atp6v0c
Pgghg
Zc3h12a
Nufip2
Rfx3
Son
Gart
Lims1
Klf9
Slc25a33
Hnrnpc
Cacna2d1
Morc2a
Zfc3h1
Thap2
Pdrg1
Ptpn12
Gadd45a
Cul3
Fndc3b
Dgat2
Tob2
Adnp2
Prnp
Prn
Ccdc85b
Gtf2a1
Noct
Rnf10
Rbks
Babam2
Ube2s
Rhou
Ubr5
Txn1
Maff
Pskh1
Coro1c
Rsu1
Marcksl1
Arl15
Serbp1
Pdia3
Catsper2
Bcl7b
Rpl9
Lias
Aacs
Lcn2
Fgfr1
Psme4
Ext1
Zbtb37
Nsun6
Arl5b
Tpp2
Lpp
Tax1bp1
Ptma
Slc12a4
Rasl11a
Pnp
Smim10l1
Pcnp
Arpc2
Serp1
Eif2a
Twist2
Klf4
Cd164
Smarca5
Serpinh1
Srrm2
Mapk1
Tbc1d13
Slc35a4
Apbb3
H2bc4
H2ac6
Resf1
Tcf25
Ttpal
Dhx9
Mphosph9
2810006K23Rik
D5Ertd579e
Zrsr2
Slc1a5
Flna
H2bc21
H2ac21
H2ac20
Map2k2
Rab43
Tnrc6c
Selenot
Nrbp1
Slc10a7
Rbmxl1
Ndfip1
Secisbp2l
Cnbp
Sbf2
Tti2
Txnl1
Sart3
Iscu
Pole4
Rpl41
Pxn
Trim39
Pitrm1
Cpeb4
Dnaja2
Bcar1
Rraga
Lamp2
Rnf214
Pcsk7
Aldoa
Tpst1
Tmem165
Trp53inp1
Fbxo30
Inpp5a
Bcl2l13
Rpl24
Pik3r1
Yeats4
Rbbp7
Ppp1ccb
Ppp1cc
Dock9
Rab21
Shc1
Cks1b
Kmt5b
Dipk2a
Acly
Ddx39b
Zc3h15
Rcn2
Nxf1
Ddx59
P4hb
Rbm12
Cpne1
Brd1
Atp1b3
Zswim4
Zfp868
Ankrd17
Snu13
Frs2
Tyw1
Sbds
Gclc
Tubb4b
Ubap2l
4933434E20Rik
Impdh2
Lrif1
Cpsf6
Wdfy1
Tagln2
Srsf1
Twf1
Arl2bp
Bag3
Gramd1a
Slc39a14
Metrnl
Simc1
Rplp1
Cox5a
Skp1
Snapc1
Tacc1
Rrp8
Ilk
Ahnak
Nfil3
Vamp3
Glipr2
Zfp236
Sertad1
Pim1
Plpp3
Sipa1l2
Pcbp1
Srxn1
Sesn2
Ahctf1
Taok1
Mlxip
Rbm14
Gm21992
Acap2
Stk40
Sp3
Pdha1
Bag2
P4ha1
Rrn3
Hnrnpm
Prpsap2
Csgalnact2
Mideas
Amd2
Amd1
Dynll2
Fam53a
Cyth2
Actn4
Napa
Osmr
Ep300
Vdac2
Grasp
Gm3448
Gm3417
Tcte3
Ermard
Uspl1
Irf2bpl
Atp13a3
Traf7
Rbbp6
Phf20l1
Nsd3
Myc
Ptpn11
Ddx50
Kansl1l
Zfp281
Wdr26
Alas1
Tax1bp3
Emc6
Frmd6
Cry2
Mettl23
Lox
Por
Selenok
Rpl23
Rnf19a
Pja2
Rela
Myo1e
Trir
Sod2
Itprip
Nagk
Snai1
Rab11b
Nckap5l
Flvcr1
Tut7
Elk4
Nr4a2
H1f0
Stau1
Msx1
Sugct
Mplkip
Cdkn2aip
Tm2d2
Adam9
Dpep1
Cct8
Mthfd2
Aars
Etnk1
Map3k14
Foxk1
Higd1a
Mlf2
Wls
Prmt5
Styxl1
Mdh2
Herc2
Ubxn6
Enah
Large1
Hdgfl2
Birc6
Mnt
Polg2
Pgap2
Nup98
Ndufs1
Eef1b2
Ric1
Atl2
Rps2
Drap1
AI837181
Ercc5
H4c17
Sra1
Ube2a
Nt5dc3
Plag1
D3Ertd751e
Rps27rt
Rab13
Rpl7a
Med22
Zcchc24
Ptx3
Rpsa
Itgav
Rasl11b
Rpl12
Lrsam1
Zfp948
Tceal8
Rdm1
Ccnt1
Ube2d3
Kdm3a
Mapre1
Fam117a
Ppp6c
Ttc41
Hsp90b1
Rpl17
Nampt
Zswim7
Ttc19
Tpcn2
Tpi1
Strap
Actr2
Bnip3
Susd6
Spty2d1
Rrm2b
Prune2
Smad7
Rnf216
Uba6
Mmp2
Pias1
Tnfaip2
Ift172
Angptl4
Chd1
Unc5b
Sorbs1
Birc2
Slc7a1
Tomm20
Qk
Csnk1d
Ifi204
Ahsa2
Chac1
F3
Flcn
E4f1
Smurf2
Mettl26
Naif1
5031439G07Rik
Ccnl2
Usp12
Polr3d
Rhoc
Huwe1
Bmt2
Aven
Usp16
Arglu1
Ppp2r2a
Psmd5
Colec12
Ndufs7
Ccdc107
Rps27a
Clhc1
Tia1
Ranbp9
Mbnl2
Chmp4b
Degs1
Ppp1cb
Ube2l3
Arl6ip1
Hmgn2
Ccdc88a
Sun2
Nsrp1
Tpm3
Tcta
Rhoa
Caprin1
Fdx1
Txnrd1
Tlk2
Lmo4
Oxr1
Tgfbr1
Vcam1
Nr2f6
Carhsp1
Npm1
Knl1
Hmgn1
Tpst2
Spag9
Ctnna1
Abtb2
Saraf
Bri3
Osbpl11
Tmed2
Taf1d
4931406C07Rik
Khdc4
Med26
Elavl1
Dusp16
Cdkn2b
Kif5b
Map4k3
Luzp1
Tigd2
Hprt
Rtn3
Abl1
Nudt4
Morf4l2
Ipmk
Hgsnat
Pabpc4
Pgrmc1
Ranbp3
Ppp1r3c
Rnpep
Sh2b3
Foxo3
Bclaf1
Serpinb6a
Ripk1
Ccm2
Plxna1
Arf1
Arpc1b
Rccd1
Ifitm2
Tmem199
Poldip2
Hmga2
Ptges3
Eml4
Katna1
Raf1
Zcwpw1
Sacm1l
Mepce
Cfl2
Ppp1r18
Rmi1
Hnrnpk
Mocs3
Dpm1
Snai2
Plekhh2
Glcci1
Pbld2
Hnrnph3
Rps9
Dhx15