ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620289 | NIH/3T3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◣ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Sspn
Pgk1
Oasl1
Asmt
Gas1
Gm13285
Gm13290
Gm13289
Vmn2r4
Ddit4
Cpsf1
H3c14
H3c15
Lrp6
H3c13
H2bc18
Rnf187
Klf7
H2bc21
H2ac21
H2ac20
Uchl5
Ro60
Pten
H3c11
Zfp36l2
Hexim2
Lox
Gm13288
Nfat5
Arl8b
H3c6
Gm13287
Cenpu
Tab1
H3c3
Champ1
Zfand5
Kpnb1
Pknox1
H4c1
H3c1
Msmo1
Lrriq3
Fpgt
Trdmt1
H3c2
H2bc15
H2ac15
Cltc
Trp53rkb
Col6a2
Mettl25
Ccdc59
Crebzf
Ccdc88a
Rubcn
Fyttd1
Rad54l2
Enc1
Lats2
Klf6
Mrpl44
Pdgfc
Adamts1
Ccng1
H3c7
Eps15
Otud7b
Unk
H4c3
Hmgcr
Cebpb
Zfp143
Rdh14
H3c4
Tmem256
Nlgn2
Tle1
Actg1
Zfat
Nsun6
Arl5b
Hoxd8
Atf4
H3c10
Stx16
Ugt1a6b
H2ac19
H2ac18
Errfi1
Dhx8
Cited2
Hdlbp
Mterf1a
Septin2
Man2b2
Ywhah
Mterf1b
Slc33a1
Mtf2
Gm13277
D030056L22Rik
Scd2
Plk2
Ankrd40
Arfgap2
Ifnz
Dock7
Uspl1
Aaas
Fra10ac1
Ssh2
Pigc
4930558K02Rik
Tmem17
Hmgcs1
H1f2
Gtf2i
Mrpl39
Usp30
Tmem242
Cep135
Gm13275
Pkd2
H4c14
H1f4
Gm13279
Gm13278
H2ac4
H2bc12
H2ac12
Rnf6
Eef1a1
Gm3448
Gm3417
9030025P20Rik
Zc3h6
Srsf1
Calm1
Aacs
Atn1
Srsf7
Tcea1
Btbd8
Ncam1
Dmap1
Foxj3
Frg2f1
Csf1
Ctnnb1
Rab33b
H3c8
Cyp51
Il6ra
Ccnl1
Gorasp2
Ndel1
Ifi211
Smg8
Mmaa
Ndufs7
H2bc6
Rps8
Ccn2
Shisa4
Dtd1
Cebpd
H4c11
Slc39a13
Wdr27
1600012H06Rik
Gm13286
H4c18
Trp53rka
Ncbp2
0610012G03Rik
Mmadhc
Arf1
Trim28
Tab2
Zyg11b
Ubc
Sf3b4
Zfhx4
Morf4l1
Ep300
Top1
Galk2
Cops2
Ube2f
Mtap
Trabd2b
Eef2
Fosl2
Chordc1
H2bc22
H2ac22
Nup54
Rbm6
Zcrb1
Pphln1
Usp47
Erlec1
Asb3
Rps17
Jmjd7
AW549877
Them4
Trib1
Mettl9
Heatr5a
Erbb2
H2bc13
H2ac13
Cox20
Top3b
Gm13276
Dr1
Ciao3
Abhd1
Psmd3
2310022B05Rik
Mtdh
Ubtd2
Arid1a
Rbx1
Lpar1
H1f0
Txnl1
Fem1b
Pfdn5
Camk1
Zfp512
Trim65
4931408C20Rik
H4f16
Tuba1a
Sp3
Txn1
Atxn7l3b
Ssbp2
Actb
Rdm1
Nfyc
Rrn3
Zfp959
Zfp41
Fn1
Fam227b
Dtwd1
Ppp1r15b
Rnf11
Ago1
Pdk4
H2bc11
H2ac11
Tob1
Atp5g2
Rraga
Rps27a
Clhc1
Myo10
Gars
Dhx16
Ropn1l
Rcn2
Nfkbil1
Atp6v1g2
Fam120b
Faap20
Tgfbr3
Tmem131
Rhou
Ube2g2
Metap1d
Mrps2
Ppp1r12a
Polr2m
Insr
B3gntl1
Eml1
Hnrnph1
Raf1
Haspin
Pdzrn3
Btg1
Mapkbp1
Col1a2
Ing5
H4c4
Ptn
Dph1
Mbnl1
Slc25a32
Dcaf13
Aasdh
Ccdc107
Srp68
Rgl2
Wls
Kansl3
Nabp1
Arl14ep
Ppp2cb
Cacnb3
Mtmr14
Prcd
Sfi1
Rps29
Ap1g1
Rhob
Resf1
Eif4e2
Bms1
Mideas
Utp3
Cldn12
Sem1
Gm13272
Pcdh18
Ulk2
Adprhl2
Tle6
Anapc4
Phax
Aldh7a1
Bnc2
Efcab2
Eefsec
Eif5
Bbs5
Cr1l
H4c9
Sppl2a
Dpy19l4
Elp1
Abitram
Nsf
Poldip3
H4c8
Znfx1
Dnajc19
Ppp1r9b
Rps27l
Rpl31
Rps3
Lss
Ywhaz
Zfp710
Pdss2
Pdcd6ip
Heatr6
Zfp827
Eef1g
Cpq
Ddx5
Cep95
Timp2
Eci1
Pdia3
Catsper2
Traf7
Thrb
Kansl2
Adrm1
Endov
Rapgef3
Efemp1
Larp4
Wdr70
Ube2g1
Ttc4
Wdr25
Wars
H2bc7
H2ac7
Pcbp1
Nsrp1
Adprh
Srp19
Mapk1ip1l
Mnd1
Acat2
H2bc9
Hbp1
Cav1
Alad
Sco2
F3
Vegfa
Pex2
Tle4
Hif1a
Eif4g2
Ets1
H2bc14
Trpm7
Mrpl21
Ighmbp2
Ythdf2
Zfp213
Fbxo7
Sqle
Nudt1
Cd164
Hnrnpdl
Psma6
Tssk6
Ndufa13
Bcar3
H4c12
H2bc8
H2ac8
Agk
Tpk1
Insig2
Zdhhc17
Taf15
Mapk14
C2cd5
Rps3a1
Setbp1
Steap1
Htra2
Idi1
Sf3a3
Cav2
Efcab14
Taf4
Zc3h4
Fam32a
Cdkn2aipnl
Eif4h
Crlf3
Ptprg
Atf1
Irf2bpl
Ylpm1
H2bc4
H2ac6
Wac
Lrp11
Rpl21
Rnaset2b
Rnaset2a
Klhdc2
Tcte3
Ermard
Csrnp2
Dclre1b
Ap4b1
Tef
Rbm39
Nelfb
Fzd1
Polr2a
H3f3b
Cxcl1
Eif1
Cwc22
Mat2a
Mt1
Fth1
Eapp
Hnrnpa2b1
Cbx3
Junb
Fyco1
Ppp1r10
Hspa8
Ier3
Mt2
Hspa5
Arf6
Rpl3
Mrps18b
Nfkbia
Dusp1
Egr1
Tsc22d1
Ppia
Ubb
Slc35e3
H4c17
Raly
Vim
Mcl1
Id3
Nr4a1
Fam53c
Gtf3c6
Mdm2
Sp1
Ier2
Ftl1
Srsf2
Mfsd11
Ifrd1
Thbs1
Zyx
Dusp5
Vcl
Chac1
Fus
Zfp36l1
Rplp0
Sdc4
Sqstm1
Slc38a2
Herpud1
Nfkbiz
Cirbp
Btg2
Tpt1
Pnrc1
Prdx1
H1f3
Id1
Scrib
BC005537
Dnajb4
Ccn1
Fos
Txnip
Flot1
Calcoco1
Tuba1c
Srsf5
Odc1
Clec2d
Yeats4
Cdkn1a
Ptp4a1
Pcif1
Sik1
Litaf
Sgk1
Fubp1
Tpm1
H2ax
Srsf6
Dnaja1
Serpine1
Rps20
Hsp90aa1
Dnajb1
Ddx3x
Srsf3
Slc25a4
Palld
Nudt13
Tuba1b
Slc3a2
Ptgs2
Epc1
Tti2
Ddx23
Tiparp
Hsp90ab1
Tmem123
Banp
Nup62
Il4i1b
Atf5
Ints6
Myl12a
B2m
Cdc42
Rgs2
Serinc3
Rptor
Ccl7
Pabpc1
9430015G10Rik
Zfp869
Gpx1
Phlda1
Snx17
Eif2b4
Ccl2
1810013L24Rik
Tra2a
Gtf2b
Calm2
Pole4
Dync1i2
Cnot1
Zfp36
Dstn
Napepld
Rsrp1
Insig1
Eif4a1
Itgb1
Smim10l1
Lmna
Cdk12
Kmt2e
Ncl
Rsrc2
Kntc1
Ier5
Selenop
Rap1b
Stat3
Zfp963
Phlda3
Pdlim5
Emd
Itga5
Sde2
Gm3435
Coq10b
Erdr1
H2-L
H2-D1
Tmsb4x
Myh9
Phf12
Tmed2
Urgcp
Setd5
Ep400
Hmgb2
Tex14
Amn1
Nfe2l2
Zfp1
Hnrnpab
Chmp4b
Gapdh
Esyt2
Zfp868
Ddit3
Pkd1
Prcc
Jun
Crem
Col1a1
Retsat
Elmod3
Ppp1r15a
Plekha4
Mknk2
Slc25a3
Zfp655
Wsb1
Tob2
Cxcl5
Gem
Trib3
Rps12
Nufip2
Zbtb37
Rnft1
Actr3
Eif3a
H4c2
Eif3c
Cfl1
Ppp1r2
Gls
Irf1
Opa1
Baiap2
Kmt5b
Adnp
Ywhag
Glul
Slbp
Dgat1
Tra2b
Rpl10a
H4bc24
H2bc23
H2ac24
H2ac23
Pprc1
Pdlim7
Chchd2
Rheb
Usp48
Son
Gart
Snx5
Mgme1
Egr2
Ugdh
Tmsb10
Map2k2
Wnk1
Sec61a1
Gadd45g
Rabgef1
Bach1
Arrdc2
Ctsl
Rnf19b
Atp2a2
Ldha
Slc9a1
Zfp207
Sptan1
Birc2
Grcc10
Ptpn2
Csnk1a1
Chrac1
Hmox1
Hnrnpa1
Cbx5
Zfp866
Fstl1
Ddx59
Ptms
Lbh
G3bp1
Map1lc3b
Sfpq
Gtf2a1
Piezo1
Calr
Slc39a10
Rock2
Homer1
Kctd5
Ubxn1
Pcna
Sod1
Eif2b5
Gsto1
Klf2
Ddx39b
Slc2a1
Arntl
9530077C05Rik
Nedd8
Gmpr2
Pim3
Arih1
Sub1
Dynll1
Cpeb2
Taf13
Phb
Hmgn2
Pcnp
H2-K1
Gadd45a
Pbld2
Hnrnph3
Ahnak
Dusp2
Aff4
Hipk3
Atp6v1h
Gadd45b
Sf3b1
Ufl1
Selenot
Zfp637
Wbp4
Elf1
Acta2
Gabpb2
Fasn
Sepsecs
Sned1
Frmd6
Lrrc8a
Col4a2
Col4a1
Slc5a3
Mrps6
Rpl9
Lias
Tmem175
Gak
Rab5if
Ets2
Vdr
Chmp6
Nsfl1c
Hexim1
Npm1
Hnrnpa3
Prrc2a
Parva
Map2k4
Ube2j2
S100a10
Rab11b
Ppm1a
Mtg1
Adpgk
Rpl17
Sik2
Letm2
Ubald1
Gpx4
Rmi1
Hnrnpk
Pigl
Ncor1
Atp6v0c
Pafah1b1
Scaf1
Rfx3
Hspa4
Dusp11
Ppp6c
Ptma
Ap2m1
Ranbp2
Cct8
Tbcd
Ndfip1
Sharpin
Maf1
Sec62
Rabl6
Psmd7
Pnp
Kat7
N4bp2l2
Btaf1
Rab1a
Lrif1
Brwd1
Adnp2
Tut7
P4ha1
Mrpl19
Dcp1a
Spindoc
Rps27rt
Rab13
Zcwpw2
Rnf10
Oat
Cct2
Azi2
Socs3
Paxip1
Tmem87b
Clk1
Rbks
Babam2
Tcf25
Fbxl3
Cap1
Rpl41
Saraf
Hspa9
Rfc4
Jak1
Calu
Rps6
Angptl4
Nop14
Grk4
Jund
Rab7
Trmt44
Ddb1
Btrc
Ncln
Crebl2
Uhmk1
Phf20l1
Ndufa9
Ctdp1
Ankrd11
Ttc41
Hsp90b1
Elk4
Anln
St3gal2
Ywhae
Filip1l
Smg5
Fam43a
Arl15
Chka
Tubb4b
Atf6
Srrm2
Ndufs4
Ppp1ccb
Ppp1cc
G3bp2
Egr3
Knl1
Cct4
Rnf34
Snx18
Rpl5
Serbp1
Dffa
Degs1
Gstp1
Irs2
Fitm2
Stau1
Luc7l
Cul1
Notch2
Secisbp2l
Gmfb
Fosb
Ccnt1
Cotl1
Pitpna
Sugct
Mplkip
H3f3a
Rpl38
Puf60
Rplp1
Rprd2
Prnp
Prn
Med6
Arf4
Amdhd2
Zdhhc1
Ndufaf5
Esf1
Anapc5
Nubp1
Nrf1
Tsnaxip1
Ranbp10
Ilf2
Sox9
Relb
Ppp4r3b
Nme1
Mif
Aven
Ing1
Mylip
Ero1a
Atg10
Tbc1d13
Klhl24
Tada3
Arpc4
Ube2d3
Prkar1a
Kif2c
Pdcd7
Kat6a
Twf1
Rras
Cald1
Atp5g3
Fbxl18
Trmo
Tubb6
Alyref2
Jpt1
Slc12a4
Tmf1
Susd6
Washc4
Rbl2
Csgalnact2
Pkm
Ndufb8
Lgals1
Plec
Pigq
Ahcyl1
Tmem248
Terf2
Lima1
Tpm4
Cnbp
Birc6
Atp5o
Rab43
Lnpep
Snrpd3
Gucd1
Gatb
Dnajb12
Zfp644
Aff1
Trir
Ier5l
Bcl7b
Gmeb2
Peli1
Cenps
Rpl23
Gspt1
Flcn
Rbm3