ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX735310 | Th2 Cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◣ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Suz12
Rps29
Flad1
Sfi1
Fyco1
Il2ra
Asmt
Sspn
Socs1
Gm3448
Gm3417
9030025P20Rik
Nabp1
Mcl1
Cdkn2aipnl
Scrib
9430015G10Rik
H4f16
Zcwpw2
Azi2
Cdk17
Pknox1
Fmnl3
Kif2c
Mrpl44
Oasl1
Mterf1b
St3gal2
Ccin
Ddx23
Dpy19l4
Fam3c
Rpia
Mterf1a
Usp48
Rbm17
Ahcyl1
Nprl2
Cyb561d2
Spns1
Ppard
Snrpd3
Gucd1
2610001J05Rik
Fbxo15
Timm21
Gatb
Tcte3
Gm3435
Dffa
Tmem115
Ermard
Taf1c
Gtf3c6
Atp5o
Vps18
Snx18
Rad54l2
Dnajc11
Ythdf2
Wbp2
Btg1
Ankrd44
Sar1b
Ifrd1
Tex14
Mgat5b
Zfat
Ctdp1
Rangap1
Cltc
Ago2
Dhx8
Il24
Ppdpf
Lrwd1
Alkbh4
Calcoco1
Ddah2
Trp53rkb
Banp
Rbm4b
Ap1g1
Wasf1
Cdc40
Exoc2
Pds5b
Ctnnb1
Ppp1r3b
Dip2b
Rnaseh1
Itk
Slc27a4
Ddx20
F2rl2
Nme1
Med27
Il7r
Islr2
Pafah2
Epc1
H4c11
Pigl
Ncor1
Irak2
Nyx
Phf12
Haspin
Vti1b
Adnp
Dusp2
Med23
Chordc1
Rubcn
H1f2
Eapp
Crebl2
Nudt13
Sik2
Snrpa1
Tsnaxip1
Ranbp10
Ccpg1os
Ccpg1
Map4k5
Atl1
Rdm1
Zfp637
Sharpin
Maf1
Zfp91
Lpxn
H1f3
Prcc
Cenps
Palb2
Dctn5
Ubqln4
Lamtor2
Tnfaip3
Faap20
Krr1
Gorasp2
Olfr525
Clec2d
Chmp4b
Pprc1
Pcnp
Tmem39a
Batf
Ndufs3
Kbtbd4
Fhit
Gm13285
Tmsb4x
Gm13290
Gm13289
Treml2
Ly9
Wdr43
Clpb
Rplp0
Rai1
Calm1
Tmem11
Exosc6
Nedd8
Gmpr2
Tcea1
Zscan22
Lilrb4a
Pank4
Mettl25
Ccdc59
Id2
Pa2g4
Rpp30
Fbxo46
Rexo2
Bola3
Slc36a1
Atp5d
Tob2
Smarcal1
H4c4
H1f4
Nsfl1c
Slc33a1
Polr3b
Trmt2a
Ranbp1
D030056L22Rik
Ablim1
H4c3
Nsmce1
Taf10
Polr2a
H3c14
H3c15
H2ac19
H2ac18
H3f3b
H4c18
H4c14
Cxcl1
Eif1
Cwc22
Errfi1
Actb
Ddx5
Cep95
Atf4
Mat2a
Mt1
Ubc
Actg1
H3c6
Klf7
Fth1
Eef1a1
Hnrnpa2b1
Cbx3
H3c13
H2bc18
H3c11
Junb
Tob1
Srsf7
Ppp1r10
Hspa8
Ier3
Mt2
Zfand5
Hspa5
Arf6
Rpl3
H2bc6
Mrps18b
Pgk1
Nfkbia
Dusp1
Egr1
Tsc22d1
Ppia
Ubb
Slc35e3
H4c17
Poldip3
Raly
Vim
H2bc21
H2ac21
H2ac20
Id3
Nr4a1
Fam53c
Mdm2
Ddit4
Sp1
Ier2
Cited2
Ftl1
H4c9
Srsf2
Mfsd11
Thbs1
Zyx
Adamts1
H4c8
Dusp5
Vcl
Chac1
H3c4
Fus
Zfp36l1
Sdc4
Cebpd
Sqstm1
H3c10
Slc38a2
Herpud1
Nfkbiz
H3c2
Cirbp
Btg2
Tpt1
Pnrc1
Ccnl1
Prdx1
Unk
Id1
Ulk2
Ppp1r12a
BC005537
Dnajb4
Ccn1
Fos
Znfx1
Txnip
Zfp36l2
Vmn2r4
Flot1
Cebpb
Tuba1c
Uspl1
Srsf5
Odc1
Efcab2
Yeats4
Cdkn1a
Nfat5
Ptp4a1
Pcif1
Plk2
Tuba1a
Sik1
Rbm39
Litaf
Sgk1
Fubp1
Tpm1
H2bc4
H2ac6
H2ax
Srsf6
Dnaja1
Serpine1
Rps20
Hsp90aa1
Dnajb1
Ddx3x
Pcbp1
Srsf3
Slc25a4
Palld
Tuba1b
Slc3a2
Ptgs2
Tti2
Rhob
Tiparp
Hsp90ab1
Tmem123
Nup62
Il4i1b
Atf5
Timp2
Ints6
Myl12a
B2m
Hnrnph1
Cdc42
Ywhaz
Rgs2
Serinc3
Rptor
Ccl7
Pabpc1
Fn1
Klf6
Zfp869
Gpx1
Eif5
Phlda1
Snx17
Eif2b4
Ccl2
1810013L24Rik
Taf4
Tra2a
Gtf2b
Calm2
Pole4
Dync1i2
Cnot1
Zfp36
Dstn
Larp4
Napepld
Rsrp1
Insig1
Eif4a1
H4c1
Itgb1
Smim10l1
Lmna
Cdk12
Kmt2e
Ncl
Rsrc2
Kntc1
Ier5
Selenop
Rap1b
Stat3
H3c7
Zfp963
Phlda3
Pdlim5
Emd
Itga5
Sde2
Coq10b
H2bc13
H2ac13
Aaas
Erdr1
H2-L
H2-D1
Myh9
Tmed2
Csf1
Urgcp
Setd5
Ep400
Hmgb2
Amn1
Nfe2l2
Zfp1
Hnrnpab
Hexim2
H2bc12
H2ac12
Hif1a
Gapdh
Esyt2
Zc3h6
Ndufs7
Resf1
Zfp868
Ddit3
Pkd1
Jun
Crem
Col1a1
Retsat
Elmod3
Ppp1r15a
Plekha4
Mknk2
Slc25a3
H1f0
Zfp143
Zfp655
F3
Wsb1
Cxcl5
Gem
Trib3
Rps12
Nufip2
Zbtb37
Rnft1
Actr3
Eif3a
H4c2
Eif3c
Eif4g2
Cfl1
Crebzf
Ppp1r2
Gls
Irf1
Opa1
Baiap2
Kmt5b
Ywhag
Glul
Slbp
Dgat1
Tra2b
Rpl10a
H4bc24
H2bc23
H2ac24
H2ac23
Pdlim7
Chchd2
Csrnp2
Rheb
Fam227b
Dtwd1
Son
Gart
Snx5
Mgme1
Egr2
Ugdh
Tmsb10
Map2k2
Wnk1
Sec61a1
Gadd45g
Pdss2
Rabgef1
Bach1
Arrdc2
Ctsl
Rnf19b
Mtf2
Atp2a2
Ldha
Slc9a1
Cpsf1
Zfp207
Sptan1
Birc2
Raf1
Grcc10
H2bc15
H2ac15
Eef2
Ptpn2
Csnk1a1
Chrac1
Hmox1
Srsf1
Hnrnpa1
H3c3
Cbx5
Zfp866
Ndel1
Top1
Fstl1
Morf4l1
Ddx59
Ptms
Sp3
Lbh
G3bp1
Map1lc3b
Sfpq
Gtf2a1
Piezo1
Calr
Slc39a10
Ep300
Rock2
Nfyc
Homer1
Kctd5
Ubxn1
Arl14ep
Pcna
Txnl1
Sod1
Eif2b5
Gsto1
Klf2
Ddx39b
Slc2a1
Mbnl1
Txn1
Arntl
Nsrp1
9530077C05Rik
Pim3
Arih1
Sub1
Dynll1
H4c12
Cpeb2
Taf13
Phb
Hmgn2
Adprh
H2-K1
Gadd45a
Pbld2
Hnrnph3
Ahnak
Vegfa
Aff4
Hipk3
Atp6v1h
Gadd45b
Sppl2a
Sf3b1
Ufl1
Selenot
Htra2
Ccdc88a
Galk2
Wbp4
Gm13288
Elf1
Acta2
Cops2
Gm13287
Gabpb2
Fasn
Sepsecs
Eif4e2
Sned1
Frmd6
Hdlbp
Lrrc8a
Polr2m
Col4a2
Col4a1
Slc5a3
Mrps6
Rpl9
Lias
Tmem175
Slc25a32
Gak
Dcaf13
Rab5if
Rps3a1
Ets2
Vdr
Pten
H2bc9
Mmaa
Chmp6
Hexim1
Npm1
Hnrnpa3
Prrc2a
Parva
Map2k4
Ube2j2
S100a10
Rab11b
Ppm1a
Mtg1
Ifi211
Adpgk
Rpl17
Fosl2
Letm2
Ubald1
Ncbp2
Gpx4
0610012G03Rik
Rmi1
Hnrnpk
Kansl2
Atp6v0c
Pafah1b1
Atf1
Scaf1
Lox
Rfx3
Hspa4
Dusp11
Ppp6c
Ptma
Ap2m1
Ranbp2
Cct8
Tbcd
Ndfip1
Ccng1
Sec62
Wdr70
Mmadhc
Hmgcr
Rabl6
Arl8b
Psmd7
Pnp
Kat7
Eci1
N4bp2l2
Btaf1
Rab1a
Lrif1
Brwd1
Adnp2
Tut7
P4ha1
Mrpl19
Dcp1a
Spindoc
Atp5g2
Rps27rt
Rab13
Rnf10
Oat
Cct2
Socs3
Paxip1
Tmem87b
Clk1
Cox20
Rbks
Babam2
Tcf25
Fbxl3
Cap1
Rpl41
Saraf
Hspa9
Aacs
Rfc4
Jak1
Gars
Calu
Rps6
Tab1
Angptl4
Nop14
Grk4
Jund
Rab7
Trmt44
Ddb1
Rps8
Btrc
Ncln
Trib1
Uhmk1
Phf20l1
Ndufa9
Rab33b
Ankrd11
Ttc41
Hsp90b1
Elk4
Anln
Ywhae
Filip1l
Smg5
Fam43a
Arl15
Rrn3
Rdh14
Mrpl39
Chka
Tubb4b
Atf6
Srrm2
Ndufs4
Ppp1ccb
Ppp1cc
G3bp2
Egr3
Knl1
Gm13275
Cct4
Rnf34
Rpl5
Serbp1
Degs1
Gstp1
Fem1b
Irs2
Fitm2
Stau1
Luc7l
Cul1
Notch2
Secisbp2l
Gmfb
Fosb
Ccnt1
Arf1
Cotl1
Pitpna
Adrm1
Sugct
Mplkip
H3f3a
Rpl38
Puf60
Rplp1
Lrp6
AW549877
Rprd2
Cd164
Prnp
Prn
Med6
Arf4
Amdhd2
Zdhhc1
Ndufaf5
Esf1
Anapc5
Srp19
Nubp1
Nrf1
Ilf2
Sox9
Relb
Ppp4r3b
Pdia3
Catsper2
Mif
Aven
Ing1
Mylip
Ero1a
Atg10
Tbc1d13
Klhl24
Tada3
Arpc4
Rraga
Mapkbp1
H2bc8
H2ac8
Gas1
Ube2d3
Prkar1a
Pdcd7
Kat6a
Twf1
Ppp2cb
Rras
Cald1
Atp5g3
Fbxl18
Trmo
Tubb6
Alyref2
Jpt1
Slc12a4
Tmf1
Susd6
Washc4
Rbl2
Csgalnact2
Pkm
Ndufb8
Lgals1
Plec
Gm13279
Gm13278
Pigq
Tmem248
Terf2
Lima1
Trdmt1
Tpm4
Cnbp
Birc6
Rab43
Lnpep
Zfp959
Dnajb12
Zfp644
Aff1
Trir
Ier5l
Bcl7b
Gmeb2
Peli1
Rpl23
Gspt1
Flcn
Smg8
Rbm3
Kpnb1
Eprs
Zswim6
Pigu
Gnas
Rbm33
Oga
Mthfd2
Arl4d
Usp16
Ankrd17
Usp38
Ube2h
Rel
Psmb2
Rcn2
Hnrnpdl
Rpl13
Malsu1
Dennd6a
Tm9sf3
Drg2
Cpsf6
Nars
Mapk1ip1l
Copb1
Zc3h11a
Zbed6
S100a6
Caprin1
Bclaf1
Arl2bp
Pomp
Ahctf1
Seh1l
Ifrd2
Ube3b
Kctd10
Get4
Slc16a1
Ppp2r3a
Hnrnpm
Rgl1
Hmgn1
Fmc1
Arpc5
Zc3h4
Zfp706
Zmat1
Ppp1cb
Aasdh
Bcl2l13
Rab21
Polg2
Ube2z
Marf1
Trap1
Nsun6
Arl5b
Dhx33
Slc7a1
E4f1
Slc7a5
Mapk1
Ccdc107
Flnc
Mff
Hnrnpc
Pskh1
Eif4ebp1
Cul5
Enc1
Camk2d
Trim39
Marchf5
Cpeb3
Nagk
Ube2l3
Tpp2
Pim1
Zfp119b
Sun2
Pold3
Tsfm
Arid5a
Snrpc
Rtn4
Rpl15
Nkiras1
Vamp2
Oaz1
Dnttip2
Csrnp1
Bud13
Caprin2
Lemd2
Pradc1
Get1
Cct7
Csde1
Sart3
Rbbp6
Iscu
Dars
Nptn
Ddx17
Srcap
Taf1d
Smad1
Psmd12
Fam193a
Dhx16
4931406C07Rik
Pdk4
Niban2
Wtap
Usp53
Txndc11
Birc3
Srek1
Smarca4
Matr3
Lrrc58
Ell2
Cd248
Creb1
Tmed5
Rpl22l1
Frs2
Cstf3
Ccdc18
Smarca5
Ggps1
Arid4b
Fscn1
Plag1
Ube2v2
Serinc1
Trp53inp1
Lcn2
Crk
Mtmr10
Por
Plekho2
Dnaja2