ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX255482 | MEF
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◣ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Srsf2
Mfsd11
Ddx5
Cep95
Rpl3
Srsf7
H3f3b
Actb
Fus
Ddit4
Ubc
Sp1
Tuba1b
Ier3
Flot1
H4c14
H3c14
H3c15
H2ac19
H2ac18
Tuba1a
Setd5
Atf4
Cirbp
H4c11
Mat2a
Ppia
Fth1
Anapc5
Calm1
Hnrnpa2b1
Cbx3
Chrac1
Errfi1
Id3
H2bc21
H2ac21
H2ac20
Tpm1
Insig1
Pdlim7
Junb
H3c6
Ldha
Gm3448
Gm3417
Tcte3
Gm3435
Puf60
Zfp866
Slc3a2
Gpx1
H4bc24
H2bc23
H2ac24
H2ac23
Dusp1
Fam53c
Urgcp
Ptbp1
Rplp0
Ptpn2
Ccn1
Id1
Rsrp1
H2bc6
Irf1
Ftl1
Pkm
Smarcb1
Ier2
Mknk2
Atad2
Mcl1
Tob1
Sdc4
Hbegf
Timp2
Ncl
P4ha1
Ndufs7
Eef1a1
Polr2a
Col1a1
Mif
Mthfd2
Lgals1
Ptgs2
Hnrnpab
H3c13
H2bc18
Map2k2
G3bp1
9030025P20Rik
Kansl2
Klf7
Nabp1
Slc9a1
Klhl9
Sgf29
Eci1
Rps20
Fasn
Ccn2
H4c8
Ier5l
Cd24a
Zfp963
Gapdh
Tubb4b
Tmpo
Bclaf1
Pcnt
Dele1
Tmem123
Vim
H2az1
Poldip3
Znfx1
Trib3
Nfkbia
Birc2
Pcna
Ppp1r10
Hspa5
Mrps18b
Tob2
Dnajb12
Pcif1
H4f16
Hsp90aa1
Nubp1
Jpt1
Amotl2
Gm13285
Gm13290
Gm13289
Sgk1
Tex14
Polg2
Prdx1
Usp18
Zfp119b
BC005537
Washc4
Hnrnph1
Immt
Aldoa
Sqstm1
Smarcc2
Csf1
Slbp
Cstb
Matr3
Slc25a4
Actg1
H4c2
Socs3
Knl1
Scamp4
Adat3
Zfp53
Btg1
S100a10
Amdhd2
Grina
Plau
Nufip2
Smg5
Nup62
Il4i1b
Atf5
Gpr19
Alg1
H3c3
Snx5
Mgme1
Hmox1
Tnfrsf12a
Dnajb4
Fubp1
Mphosph9
2810006K23Rik
Fbxo31
Gnb1l
Uba2
Grin2d
H3c10
H2bc13
H2ac13
Tmsb10
Nsrp1
Ahnak
Kat7
Swap70
Ctnnb1
Ermard
Nfe2l2
Gm13279
Gm13278
S100a6
Impdh2
Amacr
Rab5b
H2bc15
H2ac15
Gtf3c6
Pfkl
Hsp90ab1
H3c11
Acer3
Dnajb1
Napepld
Serinc1
Slc12a4
Slc38a2
Pdss2
Sike1
Usp10
Ostm1
Hsf1
Bop1
Fam227b
Dtwd1
Pik3r3
Zfp598
Actn4
Zfp433
Gm32687
Eif4a1
Pkd1
Tuba1c
Cse1l
Zfp36l1
Cltc
AU041133
Mettl25
Ccdc59
Rps27rt
Rab13
Seh1l
Ndufs8
H4c4
Pygo2
H1f2
Larp4
Spg11
Rad50
Kdsr
Pole4
Ier5
Tnfrsf1b
Commd10
Atf1
Rnd1
Irf2bpl
Ifnz
Rsph3b
Dnaja1
Sod1
H2bc1
H2ac1
Aars2
Eed
Slc16a1
Slc7a5
Pofut2
Tubb2a
Hexb
Epc1
Atxn10
Armc5
9130023H24Rik
Arrdc2
Eef2
Trmo
Srsf6
Polg
Rnmt
Fam210a
Tmem80
Deaf1
Egr1
Ddx59
Cdkn2b
Tfrc
Lcmt2
Adal
Ncaph2
Lmf2
Tti2
Rrm2b
Psap
Iba57
H3c2
H2ac4
Tmco1
Zfp672
Mgat1
Bsg
Ankrd52
Ssbp1
Klf10
Hdhd2
Eapp
Eif5
Baiap2
Calm2
Cops3
Ano6
Slc29a3
Utp18
Mbtd1
Ubb
Myl12a
Gm13287
Gm13275
Morc2a
Myo5a
Uvrag
H1f0
Tab1
Zc3hav1
Utp14b
Acsl3
Cdc42ep1
Sephs2
Pkmyt1
Tango6
Ppp1r15a
Plekha4
Lmbr1l
Tmx4
Aacs
Fscn1
Grb2
Agpat2
Pmf1
Dse
Hspa8
Thbs1
H3c7
Gls
Tmem175
Gak
H2bc9
Mbd3
Rabif
Psmg4
Pithd1
Ifi211
Ranbp2
Zzz3
Inpp5k
Abcd3
Glo1
Lipt2
B2m
Lbh
Birc6
Nabp2
Mtfr2
Eif3a
Atp5g2
Srek1
Rnf111
Phtf1
Pigq
Paip2
Ran
Nenf
Taf4
Rrn3
Mfsd5
Eef1akmt2
Serinc3
Rplp1
Chkb
Hint3
Prr12
Ogfod1
Nudt21
Arhgap28
Fadd
Zfp959
Slc20a1
P4hb
Cers5
Ptpa
Crat
Tcerg1
Dnajc14
Tmem198b
Ywhaz
Bhlhe40
Ptges3
Sowahc
Septin10
Bst2
Cxcl1
Zfand5
Usp53
Ttc17
Reep3
Nfkbiz
H2bc4
H2ac6
Cox20
Mob1a
Otub1
E130311K13Rik
Ptk2
Pacc1
Gm9949
Adrb2
Gtf2a1
Phf20
Plk2
Gtf2b
Klf2
Adprhl2
Ndrg1
Reep5
Lmna
E2f7
H4c17
Plec
Rbm33
Azin1
Rnf216
Atf7
Tdg
Lsm2
Rsph3a
Efcab2
H4c1
Rnf10
Prkar1a
Rps13
Pcmt1
Topors
Smim27
H3c1
Glce
Chac1
Zfp36l2
H2ax
Uhmk1
Oaz1
Srsf5
Ctsl
Sec61a2
Epg5
Gm13277
Slc26a6
Epha2
Top2a
Tspan15
Uspl1
Rpl13
Srp68
Zdhhc3
Exosc7
Rnpep
Dapk3
Josd1
B4gat1
Cebpb
Slc25a3
Ndufa6
Septin11
Anxa2
Ptprk
Timeless
Eif1
H1f4
Vcl
Pnrc1
Pcbp1
Letm2
Cutc
Cox15
Zfp689
Specc1l
Dnajc19
Jpt2
Cdk12
Sptan1
Rps6
Arid5a
Dynll2
Kctd20
Sparc
Zkscan8
Nop58
Pik3cb
Lrrc20
Tcim
Rpl10a
Yap1
Rufy1
Gdpd1
Pdxp
Fdxr
Tubb6
Birc5
Vps54
Mrfap1
Cmtr1
Dhrs13
Def8
Wsb1
Eprs
E4f1
Rtn4
Cavin3
Ndufa2
Ik
Rmdn1
Atp6v0e
Txlna
Slc5a6
Atraid
Zranb2
Ankhd1
Wbp4
Elf1
Flcn
Rab11a
Prune1
Dazap1
Ckap2
Itpr3
Ep300
Slc2a1
Rnf14
Ccdc62
Mlst8
Pus7l
Irak4
Tsc22d1
Rhob
Rfx3
Lsm14a
Amd2
Amd1
Cav2
D17H6S53E
Uck2
H1f3
Hnrnpa1
Cbx5
Pafah1b1
Hmgcr
Dhx9
Rnpc3
Sesn1
Sp2
Zdhhc17
Spag7
F2r
Cep57l1
Ubap2
Itga5
Zc3h6
Ddit3
Taf13
Skp1
Nuak1
Ksr1
Acot2
Ate1
Ccn4
Npm1
Cdr2l
Asph
Ddx21
Nudt8
Spats2
Uhrf1
Adprh
Nfe2l1
U2af1
Dusp10
1700056E22Rik
Cdca4
Dis3l
Sac3d1
Mtap
Nprl3
Ulk2
Hspa9
Ube2g1
Snai1
Cd63
Aip
Drg1
Plin2
Tmem134
Serpine1
Zfp36
Atp6v0c
Cap1
Naca
Kdelr2
Sertad1
Pih1d1
Aldh16a1
Polr3b
Cavin1
Nae1
Car7
Rhot2
Plscr3
Gsk3b
Ercc4
Zfp637
N6amt1
Zscan25
Hmga2
Angel2
Nol7
Fignl1
H3c4
Srsf3
Rps12
Gm13288
Parva
Gpx4
H2bc7
H2ac7
Dtwd2
Hp1bp3
Nus1
Fxr2
Sco2
Amn1
Arl14ep
Txn1
9530077C05Rik
Anln
Chka
Ipo7
Gxylt1
Ppdpf
Cfap97
Mnd1
Cep43
Pdcd2
Zfp800
Hk1
Cited2
Rpl5
Trp53rka
Hmgxb3
Fam122a
Zfp568
Mettl26
Snx3
Sp4
Gcat
Phlda3
Psmd7
Cd164
Ttc7
Map2k1
Mrpl33
Bola1
Slc44a1
Pip5k1c
Ccnl1
Pdlim5
Zfp655
Rpl17
Osbpl8
Kitl
Arhgap29
Ipmk
Ybey
Mcm3ap
Dph6
Pttg1ip
Nupr1
Plpp2
Zfp868
Tcf25
Nars
Timm13
Wdr4
Arhgdia
Adss
Ubl7
H3c8
Grpel2
Prpf38a
Orc1
Cflar
Ddah1
Stmn1
H4c3
Ppp1r12a
Maff
P2rx4
Clip1
BC029722
Bbs10
Hdac7
Fads2
Pcbp3
Fgfbp3
Kpnb1
Ccnl2
Pdcd6ip
Rnaset2b
Rnaset2a
Hjurp
A730008H23Rik
Ttc9c
Hnrnpul2
Gtf2f1
Spg20
Hddc2
Rufy2
Zfp74
Zfp282
Tapbp
Sf3b5
Wdtc1
Oas1g
Btg2
Cdkn1a
Hlcs
Tarbp2
Grasp
Rad54b
Wdr45b
H2ac10
Csnk2a1
Osgin2
Tpt1
Zfp1
Calr
Elk4
Pank2
Cdkn1b
Esd
Focad
Cks2
Zfp869
Gabpb2
Susd6
Camk2d
Slc25a46
Zfp119a
Mtres1
Scpep1
Zfp523
Esyt1
Slc38a7
Ostf1
Nmrk1
Mcm9
Frmd6
Ptma
Mrps18a
Cnpy3
Luzp1
Pyurf
Fubp3
Trmt112
Prdx5
Vgll3
Romo1
Nfs1
Herpud1
Gars
Rps8
Ube2z
Ppp2ca
Zfp213
Atf3
Wipi1
Slc25a39
Ctnna3
Fam102a
Smad4
2310039H08Rik
Zfp251
Fmn1
Sec61a1
Sp3
Mbnl1
Klhl24
Tsg101
Rps14
Plpp1
Tdp2
Acot13
Aurkaip1
Gm13272
Gm33989
Dstyk
Hmgb2
Ncln
H2bc11
H2ac11
Gtpbp8
Vps35
Orc6
Plscr1
Api5
Ago3
Cycs
Ankle2
Stxbp3
Wipi2
Zfp428
Vcp
Jmjd1c
Fancl
Prkdc
Mcm4
Exosc8
Alg5
Laptm4b
Tiparp
Selenot
Rab21
Crk
Alas1
Atp2b1
Dennd6b
Cdk11b
Usp8
Ankrd24
Ap1m1
Sirt6
Mdm2
Sfi1
Ndel1
Arf4
Peli1
Pim1
Zc3h18
Mapk6
Med11
Phactr4
Rbl1
Trim41
Sigmar1
Trim59
Chrnb1
Srsf1
Nfyc
Dennd6a
Trim39
Tor1aip2
Tor1aip1
Ankrd37
App
Armh3
Pgam5
Nab2
Bicd1
Htra1
H4c18
Rnf19b
Tent4b
Mtif3
Hmga1
Alad
Fam160a2
Hmga1b
Tmem86a
Cdkn2c
Odc1
Myh9
Dusp11
Sec62
Cnbp
Dip2b
Birc3
Mettl23
Ubqln1
Nhlrc2
Dclre1a
Ube3a
Ascc1
Anapc16
Naa16
Sf3a2
Plekhj1
Cdk2
Afg1l
Apol9a
Rab5if
Ddhd2
Il6ra
Rab11fip2
Dcp1b
Ece1
Rhobtb3
Kifbp
Yeats4
Gorasp2
Mak16
Bola3
Aldh3a2
Mis12
Derl2
Trim33
Irgm1
Galk1
Zbtb43
Ncbp2
0610012G03Rik
Ctdp1
Ankrd17
Zfp706
Mtmr10
Prpsap2
H2aw
Vdac1
Qrich1
Aarsd1
Zfp248
Ikbip
Apaf1
Cnpy2
Herc6
Ccdc138
Plekhm1
Csrnp2
Luc7l
Rpsa
Sft2d3
Capn15
Serpinh1
Bbs2
Tbc1d7
Rce1
Rtf1
Pnrc2
Ints7
Dtl
Ctps
Dmxl1
Cs
Asmt
Atg10
Cul5
Ddx17
Srcap
Rps28
Ndufa7
Cd47
Mertk
Tbk1
Msra
Thap1
Ddrgk1
Golga5
Uqcrc1
Myh10
Map6
Glul
Cpsf1
Adpgk
Tmf1
Lnpep
Psmd12
Eif3d
Stat6
Uqcrq
Mfsd4b4
Pqlc3
Trmt6
Mcm8
Naa10
Smc4
Ift80
Ddx3x
Haus1
Atp5a1
Rps21
Pet117
Kat14
Rps15
Tpgs1
H1f5
Arc
Slc25a28
Eif3c
Tm2d1
Tmem209
Ssmem1
Itfg2
Rnf139
Rnf13
Tasp1