ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620288 | NIH/3T3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◣ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Sspn
Pgk1
Ccn1
Errfi1
Ifrd1
Serpine1
Egr1
Flnc
Ier2
Actg1
Thbs1
Nr4a1
Actb
Dusp1
Dusp5
Ptgs2
Ubc
Junb
Vim
Mt2
Tpm1
Fos
Oasl1
Dnajb1
Sgk1
Homer1
Ddit3
Btg2
Ccn2
Hspa5
Gadd45g
Id3
Zyx
Mt1
Pknox1
Atf4
Ttc4
Csf1
Hspa8
Ugdh
Jun
Insig1
Gm13285
Gm13290
Gm13289
Gm13288
Gm13279
Gm13278
Ier3
Vcl
Fn1
Arc
Btg1
Vmn2r4
Hmox1
Mat2a
Timp2
Prickle1
Egr3
Tle1
Calm1
Gtf2i
Zfand5
Gm13276
Slc2a1
Asmt
Med23
BC005537
Palld
Rubcn
Fyttd1
Pdlim5
Myh9
Tab1
Ier5
Tmsb4x
Lgals1
Plk2
Sf3a3
Mcl1
Dnaja1
Ccl7
Ddx5
Cep95
Map7d1
Rdm1
Smad1
Kdm2a
Fyco1
Itga5
Gm13287
Hmgcr
Gm13275
Tob1
Srxn1
Sqle
Gm3448
Gm3417
Tcte3
H3c2
Gm3435
F3
Noct
Prdx1
Ap1g1
Aaas
Bod1l
Utp14b
Acsl3
Cav1
Zfp36
Tob2
S100a3
Blmh
1810013L24Rik
Cdkn2aipnl
Nme1
H3f3b
Ermard
Sdc4
Mtf2
Mia2
Prkce
9030025P20Rik
Trib1
Zfat
Cltc
Arl8b
Phlda1
Rps29
Myl12a
Gtf3c3
Mrpl20
Mrps2
Utp3
Ifnz
Hmgcs1
Lrp12
Ftl1
Nfat5
Yap1
Tiparp
Lmna
Smo
Marveld1
Ppia
Ccl2
Atp2a2
Nipbl
Fth1
Ctnnb1
Rpl10a
Zswim6
Ankrd40
Drg1
Oxct1
Traf6
Id1
Arl14ep
Pbld2
Hnrnph3
Rel
Csrp2
Dnajb4
Fubp1
Ctnnd1
Cdc42ep3
Rgl2
Shld2
Glud1
Sesn1
Gm13277
Snx18
Fem1b
Notch2
Fosb
Lrp6
Nrf1
Fbxo7
Tpt1
Lbh
Kansl3
Camk2d
Foxj3
Mideas
Cldn12
Frg2f1
Cpd
Gorasp2
Rcn2
H3c14
H2ac19
H2ac18
H3c6
Ppp1r15a
Plekha4
Actr3
Ifi211
Sox9
Qser1
H3c11
Them4
Vamp4
S100a6
H3c4
Zfp36l2
Rtn4
Rpl22l1
Azin1
Eml4
Dnajc24
Tox4
Rab2b
Eef1a1
Uspl1
Tcea1
Mrps33
Acap2
Mterf1a
Idi1
Cul1
Lsm11
Tnfrsf12a
Htra2
Lox
Zfp142
Bcs1l
Sfi1
Hbegf
Nipsnap2
Surf6
Ulk2
Baiap2
Ptbp1
Uvssa
Opa1
Dgat1
Raf1
Ncbp2
0610012G03Rik
Gpatch8
Actn4
Polr2a
Ccnl1
Rnft1
Txnrd1
Thap12
Enho
Prkca
Gm13272
Ppp2cb
Pds5b
Ankrd1
Nabp1
Ndufs7
Ccdc88a
Sec22b
H4c3
Cipc
Tbp
Slc25a3
Fasn
Neurl4
2810408A11Rik
Stx18
Atp6v1h
Ier5l
Cacybp
Rap2b
Pten
Fam133b
Tnfaip6
Mylip
Tab2
Gm13283
Rps20
Srsf1
Socs3
Mrps31
Rab34
Atad2b
Ift46
Naa16
Hnrnph1
Nufip2
Mterf1b
Aacs
Cavin1
Nbea
Pdia3
Catsper2
Slc39a13
Uchl5
Ro60
Txn2
Timp1
H2bc21
H2ac21
H2ac20
Med7
H3c15
Ddit4
Sh3glb1
Uhrf1bp1l
Sgcd
Mapkbp1
Agk
D3Ertd751e
Cyp51
Galk2
Cops2
Ythdf2
Tef
Cebpb
Slc25a32
Dcaf13
Lrig2
Medag
Rpl3
Cfl1
Rhoq
Sbno2
Ubb
Faf1
Wdr25
Wars
Wdr70
Rtn3
Top3b
Pcbp2
Fus
Rhob
Gadd45b
Pabpc4
Ddhd2
Rps15
Creb1
Ubtf
Pex2
Eci1
Esyt2
Sertad1
H4f16
H4c18
H4c14
Cxcl1
Eif1
Cwc22
H1f2
H4c4
Klf7
H1f4
Eapp
Hnrnpa2b1
Cbx3
H3c13
H2bc18
Srsf7
Ppp1r10
Arf6
H2bc6
Mrps18b
Nfkbia
Tsc22d1
Slc35e3
H4c17
Poldip3
Raly
Fam53c
Gtf3c6
Mdm2
Sp1
Cited2
H4c9
Srsf2
Mfsd11
Adamts1
H4c8
Chac1
Zfp36l1
Rplp0
Cebpd
Sqstm1
H3c10
Slc38a2
Herpud1
Nfkbiz
Cirbp
Pnrc1
Unk
H1f3
Scrib
Ppp1r12a
Znfx1
Txnip
Flot1
Calcoco1
Tuba1c
Srsf5
Odc1
Efcab2
Clec2d
Yeats4
Cdkn1a
Ptp4a1
Pcif1
Tuba1a
Sik1
Rbm39
Litaf
H2bc4
H2ac6
H2ax
Srsf6
Hsp90aa1
Ddx3x
Pcbp1
Srsf3
Slc25a4
Nudt13
Tuba1b
Slc3a2
Epc1
Tti2
Ddx23
Hsp90ab1
H4c11
Tmem123
Banp
Nup62
Il4i1b
Atf5
Ints6
B2m
Cdc42
Ywhaz
Rgs2
Serinc3
Rptor
Pabpc1
9430015G10Rik
Klf6
Zfp869
Gpx1
Eif5
Snx17
Eif2b4
Mrpl44
Taf4
Tra2a
Gtf2b
Calm2
Pole4
Dync1i2
Cnot1
Dstn
Larp4
Napepld
Rsrp1
Eif4a1
H4c1
Itgb1
Smim10l1
Cdk12
Kmt2e
Ncl
Rsrc2
Kntc1
Selenop
Rap1b
Stat3
H3c7
Zfp963
Phlda3
Emd
Sde2
Coq10b
H2bc13
H2ac13
Erdr1
H2-L
H2-D1
Phf12
Tmed2
Urgcp
Setd5
Ep400
Hmgb2
Tex14
Amn1
Nfe2l2
Zfp1
Hnrnpab
Hexim2
Chmp4b
H2bc12
H2ac12
Hif1a
Gapdh
Zc3h6
Resf1
Zfp868
Pkd1
Prcc
Crem
Col1a1
Retsat
Elmod3
Mknk2
H1f0
Zfp143
Zfp655
Wsb1
Cxcl5
Gem
Trib3
Rps12
Zbtb37
Eif3a
Mettl25
Ccdc59
H4c2
Eif3c
Eif4g2
Crebzf
Ppp1r2
Gls
Irf1
Kmt5b
Adnp
Ywhag
Glul
Slbp
Tra2b
H4bc24
H2bc23
H2ac24
H2ac23
Pprc1
Pdlim7
Chchd2
Csrnp2
Rheb
Fam227b
Dtwd1
Usp48
Son
Gart
Snx5
Mgme1
Egr2
Tmsb10
Map2k2
Wnk1
Sec61a1
Pdss2
Trp53rkb
Rabgef1
Bach1
Arrdc2
Ctsl
Rnf19b
Ldha
Slc9a1
Cpsf1
Zfp207
Sptan1
Birc2
Grcc10
H2bc15
H2ac15
Eef2
Ptpn2
Csnk1a1
Chrac1
Hnrnpa1
H3c3
Cbx5
Zfp866
Ndel1
Top1
Fstl1
Morf4l1
Ddx59
Ptms
Sp3
G3bp1
Map1lc3b
Sfpq
Gtf2a1
Piezo1
Calr
Slc39a10
Ep300
Rock2
Nfyc
Kctd5
Ubxn1
Pcna
Txnl1
Sod1
Eif2b5
Gsto1
Klf2
Ddx39b
Mbnl1
Txn1
Arntl
Nsrp1
9530077C05Rik
Nedd8
Gmpr2
Pim3
Arih1
Sub1
Dynll1
H4c12
Cpeb2
Taf13
Phb
Hmgn2
Adprh
Pcnp
H2-K1
Gadd45a
Ahnak
Dusp2
Vegfa
Aff4
Hipk3
Sppl2a
Sf3b1
Ufl1
Selenot
Zfp637
Wbp4
Elf1
Acta2
Gabpb2
Sepsecs
Eif4e2
Sned1
Frmd6
Hdlbp
Lrrc8a
Polr2m
Col4a2
Col4a1
Slc5a3
Mrps6
Rpl9
Lias
Tmem175
Gak
Rab5if
Rps3a1
Ets2
Vdr
H2bc9
Mmaa
Chmp6
Nsfl1c
Hexim1
Npm1
Hnrnpa3
Prrc2a
Parva
Map2k4
Ube2j2
S100a10
Rab11b
Ppm1a
Mtg1
Adpgk
Rpl17
Fosl2
Sik2
Letm2
Ubald1
Gpx4
Rmi1
Hnrnpk
Pigl
Ncor1
Kansl2
Atp6v0c
Pafah1b1
Atf1
Scaf1
Rfx3
Hspa4
Dusp11
Ppp6c
Ptma
Ap2m1
Ranbp2
Cct8
Tbcd
Ndfip1
Ccng1
Sharpin
Maf1
Sec62
Dpy19l4
Mmadhc
Rabl6
Psmd7
Pnp
Kat7
N4bp2l2
Btaf1
Rab1a
Lrif1
Brwd1
Adnp2
Tut7
P4ha1
Mrpl19
Dcp1a
Spindoc
Atp5g2
Rps27rt
Rab13
Zcwpw2
Rnf10
Oat
Cct2
Azi2
Paxip1
Tmem87b
Clk1
Cox20
Rbks
Babam2
Tcf25
Fbxl3
Cap1
Rpl41
Saraf
Hspa9
Rfc4
Jak1
Gars
Calu
Rps6
Angptl4
Nop14
Grk4
Jund
Rab7
Trmt44
Ddb1
Rps8
Btrc
Ncln
Crebl2
Uhmk1
Phf20l1
Ndufa9
Rab33b
Ctdp1
Ankrd11
Ttc41
Hsp90b1
Elk4
Anln
St3gal2
Ywhae
Filip1l
Smg5
Fam43a
Arl15
Rrn3
Rdh14
Mrpl39
Chka
Tubb4b
Atf6
Srrm2
Ndufs4
Ppp1ccb
Ppp1cc
G3bp2
Knl1
Cct4
Rnf34
Rpl5
Serbp1
Dffa
Degs1
Gstp1
Irs2
Fitm2
Stau1
Luc7l
Secisbp2l
Gmfb
Ccnt1
Arf1
Cotl1
Pitpna
Adrm1
Sugct
Mplkip
H3f3a
Rpl38
Puf60
Rplp1
AW549877
Rprd2
Cd164
Prnp
Prn
Med6
Arf4
Amdhd2
Zdhhc1
Ndufaf5
Esf1
Anapc5
Srp19
Nubp1
Tsnaxip1
Ranbp10
Ilf2
Relb
Ppp4r3b
Mif
Aven
Ing1
Ero1a
Atg10
Tbc1d13
Klhl24
Tada3
Arpc4
Rraga
H2bc8
H2ac8
Gas1
Ube2d3
Prkar1a
Kif2c
Pdcd7
Kat6a
Twf1
Rras
Cald1
Atp5g3
Fbxl18
Trmo
Tubb6
Alyref2
Jpt1
Slc12a4
Tmf1
Susd6
Washc4
Rbl2
Rad54l2
Csgalnact2
Pkm
Ndufb8
Plec
Pigq
Ahcyl1
Tmem248
Terf2
Lima1
Trdmt1
Tpm4
Cnbp
Birc6
Atp5o
Rab43
Lnpep
Zfp959
Snrpd3
Gucd1
Gatb
Dnajb12
Zfp644
Aff1
Trir
Bcl7b
Gmeb2
Peli1
Cenps
Rpl23
Gspt1
Flcn
Smg8
Rbm3
Kpnb1
Eprs
Pigu
Gnas
Rbm33
Oga
Mthfd2
Arl4d
Usp16
Ankrd17
Usp38
Ube2h
Psmb2
Hnrnpdl
Chordc1
Rpl13
Malsu1
Dennd6a
Tm9sf3
Drg2
Cpsf6
Nars
Mapk1ip1l
Copb1
Zc3h11a
Zbed6
Caprin1
Bclaf1
Arl2bp
Pomp
Ndufs3
Kbtbd4
Ahctf1
Seh1l
Ifrd2
Dip2b
Ube3b
Kctd10
Get4
Slc16a1
Ppp2r3a
Hnrnpm
Rgl1
Hmgn1
Fmc1
Arpc5
Zc3h4
Zfp706
Zmat1
Ppp1cb
Aasdh
Bcl2l13
Rab21
Polg2
Ube2z
Marf1
Trap1
Nsun6
Arl5b
Dhx33
Slc7a1
Krr1
E4f1
Slc7a5
Mapk1
Ccdc107
Mff
Hnrnpc
Pskh1
Eif4ebp1
Cul5
Enc1
Trim39
Marchf5
Cpeb3
Nagk
Ube2l3
Tpp2
Pim1
Zfp119b
Sun2
Pold3
Tsfm
Arid5a
Snrpc
Rpl15
Nkiras1
Vamp2
Rbm17
Oaz1
Dnttip2
Csrnp1
Bud13
Caprin2
Lemd2
Pradc1
Get1
Cct7
2610001J05Rik
Csde1
Tmem39a
Sart3
Rbbp6
Iscu
Dars
Nptn
Ddx17