ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX236483 | ES cells
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◣ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Gtf3c6
Sspn
Eapp
Ube2j2
H2bc4
H2ac6
Drg2
Dcp1a
Sfi1
H3c6
Mrpl39
Ap1g1
Tti2
H4c4
Txnip
H1f3
H4c14
H4c18
H2bc12
H2ac12
Rbm17
H4c8
Dnttip2
Cacng2
Rdm1
Agk
Atp6v1h
Mymx
Fyco1
Alyref2
Tmem270
H2ax
H3c13
H2bc18
Mrpl44
Sema4b
H1f2
Scnn1g
Mrpl1
Smg8
Hdhd3
Ccdc83
Ndufs7
Ep400
Trp53rkb
H3c14
H3c15
H2ac19
H2ac18
Ndufc2
Ints12
Gstcd
Raf1
Cryzl2
H4c9
Tex14
Dmap1
Pafah2
Ndufaf5
Esf1
Ap3s2
Hsd17b11
Rbpj
Rnf125
Npas4
Cilk1
Wwp1
Eif4e2
H2bc8
H2ac8
Rps19bp1
Sf3a3
Tph2
Spp1
Ints10
H4c3
Med23
Klhl20
Utp3
Spats1
Nme1
Megf8
Nuf2
Tnrc6b
Pipox
Ints1
Cltc
Mtf2
Trmt44
Gorasp2
Rab33b
Oasl1
Ndufs3
Kbtbd4
Zfp609
Ppil3
Nif3l1
Cpsf1
Sntb2
Fam149b
Ecd
Ppp1r10
H4c11
Irak2
Lrrc59
Palb2
Dctn5
Dhx8
Mrpl21
Ighmbp2
Poldip3
Scrib
Nsa2
Gfm2
Gins3
Rilp
Ccdc107
H4c6
Bcl2l1
Tpm1
Opa1
Ndufaf1
Snrpe
Rbm34
Vps28
Dhx16
Ncam1
Cep85
Sde2
1190007I07Rik
Slc33a1
Rint1
Sox2
Adnp
Grcc10
Mtg1
Mettl25
Ccdc59
H3c3
Vps51
Tafa5
Chrnb2
Dhx30
Mlf2
H2bc3
Cacnb3
Chgb
Mrps21
Zyg11a
Etl4
Rubcn
Fyttd1
Trap1
Trp53rka
Aaas
Snrpc
Eps15l1
Msh4
Gpatch8
Ppp1r11
H2bc15
H2ac15
Cdkn2aipnl
Atg16l1
Tubg1
Retreg3
Zfp13
Lyzl6
Wdr36
Tex19.1
Tmem101
H2bc14
Hmgxb4
Cdiptos
Cdipt
Atp5k
Zbtb37
Ttc14
Edc4
Ttc25
Stx18
Atad2b
Mterf1b
Gjc1
Rptor
Cipc
Zfp638
Cdk5rap1
Dus1l
Ybey
Mcm3ap
Mrps18c
Helq
Atp6v0d1
Mrps28
Polr2j
Psmg3
Slc39a3
Pigc
4930558K02Rik
Surf6
Svop
Ndufb8
H4c12
Trir
2310057M21Rik
Srsf7
Ints5
Det1
Trmu
Ndufa9
Dus2
Ddx28
Ddx56
Ddx55
Top1mt
Golga7b
Zmym1
Usp30
Adprhl2
Nol10
Fam169a
Ddb1
Lrp6
Cdc16
Mrps15
Morf4l1
Chd8
H2bc6
Josd2
Zcwpw2
Azi2
Arf4
Arhgef12
H3c7
H2bc9
Yipf2
Timm29
Sphk2
Rpl18
Zfp532
Tmem95
H2bc13
H2ac13
Ppp1ccb
Ppp1cc
Sec22b
Cast
Pou2f2
Abca14
Snx18
Ttc4
Pigm
Ccdc88a
H2bc11
H2ac11
Pex3
Adat2
Naa35
Rac3
Znfx1
Tsfm
Dusp12
Triml2
Fbxl22
H4c17
Tbcd
Psmd3
Tmem222
Rrm1
Npy1r
Srp68
Tchp
Necap1
Rapgef1
Abca3
Abca17
Chordc1
Dffb
Cep104
Man2b2
Ciao3
1700008O03Rik
Def6
Rad54l2
Gpr19
Rpl27
Taco1
Ift46
Nol8
Cenpp
Spry1
Nup54
Bms1
Sod2
Xrcc5
Rabggta
Comtd1
Kbtbd6
Ephb1
H4f16
Paxip1
Nutf2
B4galt7
Ccdc174
Eif5a
Zfp113
Pvr
Kctd5
Galk2
Cops2
Fitm2
Anapc5
Faf1
Htt
Ints4
Rbm28
Nceh1
Banp
Trip4
Ropn1l
Pomt1
Tmed9
Wdr18
L1td1
Tob2
H4bc24
H2bc23
H2ac24
H2ac23
Rpl5
Pigu
Dhx33
Gatad2b
Tars2
Gne
Slc36a1
Mterf4
Hemk1
Alkbh2
Gm3448
Gm3417
9030025P20Rik
Gpx1
Epn1
Mrps33
Tmem242
Eif2b3
Lsg1
Dync1i2
Slc9a1
Gabpb2
Stx16
Fndc3b
Mnat1
B4galt3
Mc5r
Piezo1
Sdad1
Mrpl35
Phactr4
Acp6
Smim8
Zfp710
Tdgf1
Nanog
Ccdc110
Zc3hc1
Snrpd1
Dennd6b
Zranb1
Fntb
Med4
Hint3
Med27
Dnajc11
Fbxl15
Sec13
A930018P22Rik
Alkbh7
Mtmr6
Uqcrc1
Wdr24
Errfi1
Rab1a
Ssbp1
Zscan25
Kbtbd7
Ing1
Cwc25
Timm50
Jtb
Cdk20
Gm5544
Rnf216
Vps18
Tomm7
Gstm1
Kdm1a
H4c1
Dpy19l4
Ints3
Ccar1
Cnot10
Zbtb40
Afmid
Tk1
Nudt13
Get1
Acp2
Mphosph10
Mcee
Sar1b
Ddx20
Eif3g
Dtd1
Flnb
Sppl2a
Htra2
Snw1
Top3b
Klhdc4
Ift22
Chd9
Gemin2
Liph
Esyt2
Rhot1
Parl
Krr1
Riok1
Cage1
2700062C07Rik
Kdm5b
Pxk
Ndufv1
Dstyk
Rpl3
Ubxn1
Mrpl58
Aftph
Mdp1
Pycard
Sf3b2
Wdr74
Cox7a2
Med11
Bloc1s4
Psmd6
Tmem208
Lrrc29
Rtca
Epb41l4a
Dact3
Mtmr10
Fra10ac1
Eps15
Exosc6
Zscan12
Ppp6c
Arl8b
Poglut3
Thumpd3
Mrpl30
Mitd1
Ifitm1
H1f1
Cacng3
Zfp207
Atp5g2
Aacs
Champ1
Cr1l
Zscan22
Plekhb1
Psmd7
Clk4
BC049762
Pcbp2
Snrnp27
Fmnl3
Napg
Plekhm3
Naxe
Dhrs7b
Atp5g3
H2bc22
H2ac22
Anapc10
Abce1
Vdac1
Tnpo3
Atad3a
Plekhf2
Pdss1
Srrt
Snrpd3
Gucd1
Aasdh
Dcaf10
Mta2
Psmf1
Wdr90
Zfp738
H2bc1
H2ac1
Ndufc1
Gemin6
Arl14ep
Ilf2
Caprin2
Pfdn5
Psmc2
Zc3h10
Nacc1
Rbsn
Ogt
Cirbp
Rpl38
Mrps31
Commd2
Pdss2
9530077C05Rik
Anln
Tmem115
Rrp1
Rrp15
Polr1b
Bag6
R3hcc1
Utp6
Nufip2
Csnk1a1
Cct8
Mterf1a
Kmt2d
Clcn3
Ppip5k2
Gin1
Mrps2
Zfp141
Ino80b
Ubiad1
Dctpp1
H2bc21
H2ac21
H2ac20
Srp19
Isy1
Psmg1
2210016L21Rik
Stil
Bloc1s5
Ptpru
Cnmd
Mif
Tmed5
Ccdc18
Scfd1
Nsmce4a
Msra
Cfap298
Nob1
Usp37
Cnot9
Ipo8
Pld2
Zcchc4
Elf3
Nfat5
Ints6
Kat6a
Wtap
Rnf187
Haspin
Nudt15
Arpc3
Myg1
Zfp660
Serpina3i
Uspl1
Ppp4r3b
Mkrn2
Stk11
Vps33a
H3c2
Cox18
Rfesd
Pex12
Fbxo46
Them6
Luc7l
Ist1
Pnisr
Specc1
Asah1
Ints7
Dtl
Ddost
Polq
Slc39a6
Elp2
Hif3a
Atg16l2
Adra2b
Hspa4
Fem1b
Rbl2
Cluh
Ikzf5
Acadsb
Map2k7
Ccdc71
Otud7b
Mettl3
Commd4
Ruvbl1
Amdhd2
5730455P16Rik
Tefm
Nvl
Ypel5
Hif1an
Pold3
Ptpa
Crat
Rps2
Pemt
Slc35b2
Atp6v0a1
Ndufa3
Ppp1r8
Phc1
Tmem132a
Inhbe
Asmt
Pigq
Ankrd40
Pgghg
Gaa
Ptcd1
Cpsf4
Pstk
Tfb2m
Cnst
Sh2b1
Sumf2
Dido1
Impdh2
Gid8
Btbd8
Cpped1
H3c8
Parp2
Ndufa5
Asb15
Tmprss9
Ralgapb
Hvcn1
Zfand5
Nabp1
Mcl1
Phf12
Med17
Dcps
Dynlt1b
Vamp4
Mib2
Mob3c
Espl1
Irf9
H1f5
Thoc6
Hcfc1r1
Ctc1
Etfbkmt
Tmed4
Stat3
Pnp
Gspt1
Gtf3c3
Timm44
C1qbp
Pds5b
Dbnl
Tma16
Slc43a1
Mcm5
Slc35b1
Wdr31
Elovl6
Snx17
Eif2b4
Gtf2b
Mrpl12
Cops8
Idh1
Cradd
Hspa14
Cdnf
Mcoln1
Nufip1
Gpalpp1
Tnfrsf21
Neurod4
Kcnh1
Fstl5
Dusp13
Dstn
Tab1
Cenps
Pxn
Orc5
Rbm4b
Spg7
Vamp1
Prrg2
Nosip
Tfdp2
Appl2
Fgf4
Calm2
Rps3a1
Taf5
Mob1b
Wdr61
Thoc5
Aar2
Mrpl34
Sumf1
Dhx32
Lrp1
Dgka
Zmynd19
Stmn3
Tcte3
Ermard
Ndufs4
Rnf123
Zfp668
Zfp646
Ccny
E2f3
Flywch1
Vps13d
Cds2
Gtf2h2
Atf6b
Ldlr
Pcdhga12
Mst1
Chek1
Pcnp
Ranbp2
Rabl6
Cct4
Mff
Smarca5
Ptrhd1
Cenpo
Lamp1
Thoc1
Tnpo1
Ppih
Cox17
Rnf141
Fcf1
Arel1
Ppm1f
Ltbp2
Slc35e3
Nip7
Golga1
Cog8
Timm22
Micu2
Wdr76
Mfap1a
Adipor2
Prkab1
Faap20
Dnajc2
Camk1d
Ddx24
Hook2
Cntnap2
Sf3b1
Btrc
Kif2c
Rbm33
Blmh
Brca2
Rnf115
Polr3c
Lrwd1
Alkbh4
Ssrp1
Tox4
Rab2b
Sidt2
Fam3c
Pex14
Zfp770
Saal1
Serping1
Rph3a
Pls1
Map2k2
Dnajc16
Yars
S100pbp
Smn1
BC003965
Hinfp
Lsm11
Mfsd10
Epb41l4b
Impa2
Mrpl52
Lrig2
Asxl2
Xylb
Selenom
Prpf18
Gm3435
Dgat1
Mmadhc
Adrm1
Dguok
Ints13
Fgfr1op2
Topbp1
Kansl3
Anxa7
Eef1akmt4-ece2
Eef1akmt4
Alg3
Haus6
Ttc37
Arsk
Zfp658
Zfp106
Hsd3b7
Fcsk
Adprhl1
2610042L04Rik
Nup153
H2ac10
LTO1
Fan1
Taf1c
Rpp14
Htd2
Nomo1
Tspyl4
Rps23rg1
Prss48
BC005537
Chchd2
Birc2
Tmem11
Fbxw11
Rad50
Map2k1
Rangap1
Lsm6
Sh3glb1
Tcf7l1
Commd10
Ski
Atic
Utp25
Pcca
Cnpy1
Sugct
Mplkip
Zdhhc1
Tbrg1
Ppp4r3a
Nub1
Cenpu
Zfp280d
Dnajc24
Mkrn3
Zfp560
Kptn
Rrp9
Parp3
Fbxl13
Armc10
Arhgef1
Nav2
Fam136a
Trpm5
Micalcl
2410004P03Rik
Rps20
Rps9
Brf1
H2bc7
H2ac7
Ccp110
Zfp35
Rab29
Gm17266
Asl
Amigo3
H1f4
H3c10
Calcoco1
Gm13285
Pprc1
Gm13287
Nop14
Grk4
Gm13275
Fbxo11
4833420G17Rik
Dhodh
Slc35b4
Hax1
Tfrc
Fbxo6
Ap4e1
Vps11
Uckl1
Acy1
Grk5
Mrps14
Pomk
Slx1b
Marchf4
Bola2
Actr3
Nsrp1
Rpl9
Lias
Hnrnpa3
Snrpa1
Nelfa
Polk
Cert1
Pfkm
Rtcb
Zfp512
Wbp2
Nbeal1
Thumpd2
Zfp146
Pold1
Nudt1
Map3k3
Gcnt2
Tube1
Fam229b
Rfc2
Tnfrsf22
Srcin1
Mrm2
Htr5a
St3gal2
Sgms1
Cnot11
Agfg1
Exosc4
Slc12a9
Klhl34
Casz1
Ier2
Npm1
Adpgk
Tmem214
Atp9b
Mbd3
Tmem30a
Sys1
Api5
Tfip11
Ppwd1
Cenpk
Tcf4
U2surp
Pigo
Zfp94
Tomm5
Prrg4
Tvp23a
Tctn3
Ppfibp2
Npff
Gli1
Entpd1
Clec12a
Tars
Wrap53
Trp53
Ddx47
Ccdc57
Uevld
Ssna1