ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX236483 | ES cells
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◣ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Kpna1
Txndc11
Greb1
Hexb
Il31ra
Olfr1274
Cldn34d
Fbxw4
Olfr806
Vmn2r102
Aldh9a1
Gm10710
Dchs2
Dnah7b
Sspn
Gtf3c6
E030030I06Rik
Eapp
Aadacl2fm1
Drg2
Ube2j2
H2bc4
H2ac6
Cd209a
Taf12
Gmeb1
Smim17
Dcp1a
BC107364
Nkx2-6
Setd4
Cbr1
Col6a6
Rsph3b
Arl4d
Wwox
Sfi1
Eif4enif1
Csf2ra
LOC666331
Gm11634
H1f3
H3c6
H2bc8
H2ac8
Rsph3a
Ap1g1
Pknox1
Mrpl39
Tex14
Pramel32
Ifna13
Tti2
Sirt4
Kif2c
H4c14
H3c13
H2bc18
Abhd6
Txnip
H2bc6
H4c4
H3c4
H2bc7
H2ac7
Slc14a2
Fcgr4
Cerk
H4c6
Rbm17
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Uba2
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
Dnttip2
H3c8
H2ac10
H4c8
Tal2
Cacng2
Agk
Alyref2
Rdm1
Atp6v1h
Ninl
Lrrc2
Tmem107
Ethe1
Mrpl44
Zfp143
Hmbs
H2ax
Dpagt1
Tmem270
Cldn13
Fyco1
Xcr1
Smg8
Mymx
Slc29a1
Hdhd3
Sema4b
Ccdc83
H3c3
H2bc3
H1f2
Tmem54
Hpca
Ndufs7
Armc5
9130023H24Rik
Tmem211
H3c15
H3c14
H2ac19
H2ac18
Trp53rkb
Smim12
Atp5g1
Scnn1g
Mybl2
Mrpl1
Mcl1
Osbpl1a
Raf1
Pus1
Ep400
Dmap1
Cox8b
Ndufc2
Rbpj
Irgc1
Ptges2
Fbxo9
Cilk1
Ints12
Gstcd
Npas4
Rps19bp1
Atf4
Utp3
Pafah2
Cuedc1
Cryzl2
Eif4e2
Chrng
Ndufaf5
Esf1
Klhl20
Hsd17b11
Ints10
Tph2
Sf3a3
Mybpc3
Jph2
Apela
Nme1
Ap3s2
Pipox
Megf8
Grhpr
Gm5820
Plpp3
Psmd2
Spp1
Nuf2
Lrrc59
Sntb2
Cryaa
Med23
Rnf125
Cd37
H4c3
H1f6
Ndufs3
Kbtbd4
Ppil3
Nif3l1
Spats1
Slc39a4
Cpsf1
Dcaf5
Irak2
Trpv4
Cfap100
Fam149b
Ecd
Eipr1
Ntn5
Mtf2
Palb2
Dctn5
Tnrc6b
Ints1
Sit1
Ccdc107
Cltc
Eif4b
H3c7
H2bc9
Rer1
Morn1
Alpk3
Scrib
Gins3
Opa1
Trmt44
Acox3
Nsa2
Gfm2
Ppp1r10
Mrps18b
Atat1
Tpm1
H4c11
Zfp609
Ubd
Olfr95
Olfr94
Rab33b
Thumpd3
Rbm34
Bcl2l1
Tnks1bp1
Gdf3
Apobec1
Vps28
Psrc1
Ppid
Ncam1
Dhx16
Tdg
1190007I07Rik
Syt5
Tecpr1
Ppp2r5c
Dhx8
Poldip3
Gm3776
Cep85
Ripor2
Tm7sf2
Slc33a1
Zfpl1
Vps51
Tmem262
Cdca5
Mlf2
Sec24d
Rint1
Pus7
Jam2
Adnp
Mrpl21
Ighmbp2
Dhx30
Ube2l3
Rimbp3
Mrps21
Etl4
Sox2
Chgb
H3f3c
Ndufaf1
Zyg11a
Scarf1
Rilp
Rubcn
Fyttd1
Rps6kb2
C2cd5
Carns1
Hrh2
Sde2
Kdm6b
Capns1
H3c2
H2ac4
Sympk
Aaas
Foxa3
Tmem101
Snrpe
Gna15
H4c2
Ptpn6
Grcc10
Ppp1r11
Znrd1as
Znrd1
Rnf39
Pcdh20
Vmn2r72
Rprml
Lyzl6
Crhr2
H3c10
H2bc13
H2ac13
H2bc14
Cdkn2aipnl
Snrpc
Ube2q1
Chrnb2
Dop1b
Zbtb37
Hmgxb4
Cacnb3
Sost
Atp5k
Mettl25
Ccdc59
Edc4
Ubxn2a
Atad2b
Sytl3
Wdr92
Pno1
H4c12
H2bc15
H2ac15
Cdk5rap1
Stx18
Ttc25
Pou5f1
Kcnk9
Zfp638
Polr2j
Tafa5
Gbx1
Rptor
Mterf1b
Usp30
Svop
Psmg3
Gpatch8
Pstk
Slc39a3
Pigc
4930558K02Rik
Mrps18c
Helq
Nos3
Kcnh2
Trp53rka
Trmu
Gjc1
Ncf2
Mtcl1
Ttc39d
Rabggtb
Msh4
Eps15l1
Det1
Mtg1
Ttc14
Ddx55
Tubg1
Retreg3
Zfp13
Top1mt
Atg16l1
Hoxb9
Dync1h1
Tmed4
Ddx56
Nol10
Tacr2
Wdr36
Tekt2
Adprhl2
Mrps15
Cdiptos
Cdipt
Lypla1
Tex19.1
2410137M14Rik
Tkfc
Ddb1
Cdc16
Cbx7
Fam169a
Arl5c
Plxdc1
Arf4
Lrp6
Cipc
Atp6v0d1
Agrp
Arid5b
Cbfa2t2
Mex3a
Golga7b
Etnk2
Ren2
Ren1
Zcwpw2
Azi2
Mrps28
Faim
Pik3r2
Olfr90
Mpv17l2
Ifi30
Ppp1ccb
Ppp1cc
Surf6
Rpl7a
Med22
Gramd4
Chd8
Aqp8
Sppl2c
Ints5
Ganab
1810009A15Rik
Lbhd1
Yipf2
Timm29
Snx18
Olfm1
Sec22b
Rfng
Gps1
Tor1b
Ybey
Mcm3ap
Zmym1
Pigm
Crym
Chn2
Abca14
Znfx1
Ttc4
Cast
Ncs1
Twistnb
Disp3
Socs3
Prrg2
Nosip
Rac3
Lrrc45
Cenpx
Dcxr
Cntn2
Ndufb8
Hif1an
Sec31b
Slc35f6
Otx2
Ndufa9
Akap3
Srp68
Galr2
Nynrin
Fbxl22
Tsfm
Stat1
Rps19
Cd79a
Triml2
Morf4l1
Tbcd
Rpl27
Ifi35
Gstt2
Hgfac
Rab3b
Npy5r
Npy1r
Rad54l2
Trim28
Dcaf11
Tchp
Zfp532
Necap1
Ciao3
Zbtb45
Ooep
Ddx43
H4c17
Dffb
Cep104
Sphk2
Spaca4
Rpl18
Fam83e
Ctdsp2
Rrm1
Spry1
Hsd11b2
Anapc5
Pofut2
Nup54
Dus1l
Xrcc5
Tgm1
Rabggta
Lefty1
Josd2
Aspdh
Cenpp
Fes
Fitm2
Chordc1
Sod2
Taco1
Cln6
Comtd1
A430057M04Rik
Stard10
Atg16l2
Pou2f2
Nceh1
Ephb1
Cdk15
Paxip1
Tmed9
B4galt7
Thap11
Nutf2
Cenpt
Zfpm1
Kbtbd6
Eps8l1
Lima1
Lag3
Faf1
Cdkn2c
Arhgef12
Pttg1ip
Pvr
Rgs9
Gstm7
Gstm6
Cobl
Ccdc88a
Rpl5
Ift46
Arcn1
Zfp113
Cops6
Ints4
Ropn1l
Rbm28
Tas1r3
Ints11
Cptp
Wdr18
Chrna1
Ctdsp1
Trir
Tnpo2
Get3
Gne
Tars2
Tmem221
Slc27a1
Nxnl1
Naa35
Qrich2
Ubc
Mrpl45
Psmd3
Pex3
Adat2
Slc36a1
Pck1
Tob2
Ppard
Dus2
Ddx28
Ppan
Angptl6
Htt
Med31
4930563E22Rik
Dusp12
Zscan22
Shfl
Fam177a2
Fam177a
Mc5r
Abca3
Abca17
Epn1
Rapgef1
Slc15a1
Usp4
Gpx1
Phactr4
Natd1
Abcc4
Sfrp4
Def6
Ankrd35
Setd5
Zfp791
Gpr19
Mrps33
Mnat1
Zfp710
Zfp979
Trem2
Rsc1a1
Nanog
Kpna7
Epp13
Bfsp1
Gabpb2
Mrpl35
Immt
Med27
Sdad1
Zc3hc1
Man2b2
Med4
Sec13
Mical1
Crocc
Mtmr6
Lsg1
Lhfpl5
Dapp1
H4f16
H2aj
Slc9a1
Hint3
Acp6
A930018P22Rik
Tmem95
Kctd11
L1td1
Errfi1
Rab1a
Zfp598
Ing1
Cars2
Npw
Dnajc11
Ccdc174
Zbtb34
Fam220a
Zfp57
Gm5544
Rbp7
H2-M5
Car5a
Banp
Senp3
Ssbp1
Snrpd1
Esco1
Bms1
Tnfsf13
Nr1h3
Acp2
Psd
Fbxl15
Ube2s
Tomm7
Tnfsfm13
Tnfsf12
Cpsf4l
Uqcrc1
Spata24
Prob1
Bpifb9b
Gm3448
Gm3417
9030025P20Rik
Kctd5
Dpy19l4
Pspn
Clpp
Alkbh7
Jtb
Fbxo22
Atp1b2
Nat8f4
Galk2
Cops2
Trip4
Pclaf
Vps18
Pde6d
Cops7b
Gstm1
Pomt1
Ung
Alkbh2
Gp1bb
Rimklb
Tdgf1
Sec24a
Sar1b
Eif3g
Tk1
Afmid
Liph
Phf2
Pigu
Timm50
Hemk1
6430571L13Rik
Mterf4
Smim26
Dtd1
Pnmal2
Pnmal1
Fam240a
Esyt2
Htra2
Dqx1
Aup1
Get1
Snw1
Vpreb1
Top3b
Igll1
Gatad2b
Cnot10
Ift22
Sgca
Spic
Smim4
Nt5dc2
Adora1
Ulk1
Kdm5b
Uri1
Parl
Naglu
Nfatc4
Pirt
Dppa5a
Rhot1
Stx16
Doc2g
Gps2
Eif5a
Riok1
Cage1
Ndufv1
Sec23a
Gemin2
Syt3
1700008O03Rik
Mrpl28
Plekhh1
Pgap6
Enpp3
Ccdc110
Syngr1
Rpl3
Dync1i2
Piezo1
Mrpl58
Krr1
Tmem242
Gnai2
Wdr74
Stx5a
1700092M07Rik
Fntb
Eif2b3
Zscan10
Dstyk
Scgb1a1
Fam166b
Tmem191c
Sulf2
H4c1
H3c1
H1f1
Pkm
Celf2
Fndc3b
2700062C07Rik
Pxk
Txn2
Tmem208
Lrrc29
Cdk5rap3
Smug1
Zfp981
Mfng
Casq1
Olfr1499
Nufip2
Mtmr10
Exosc6
Eps15
Cox7a2
Gcnt2
Bloc1s4
Sptbn4
Wdr24
Stub1
Jmjd8
Git1
Ankrd13b
B4galt3
Grtp1
Alpl
Hspa8
1700001P01Rik
Ppp6c
Arl8b
Poglut3
Fra10ac1
Atg101
Dennd6b
Cwc25
Kbtbd7
Smim8
Rtca
Dbt
Tet1
Satb1
Hoxb13
Sgk1
Rnf216
Vdac1
Klhdc4
Mdm4
Gsdma2
Zranb1
Ssr2
Lefty2
Mllt6
Cdk20
Apol9b
Septin3
Gm4450
Traf4
Ints3
Cr1l
Atad3a
Plekhm3
Naxe
Tex46
Kdm1a
Pdss1
Myo18a
Gjb3
Cacng3
A930007A09Rik
Psmd7
Mterf1a
Clk4
BC049762
Ccar1
Pdk1
Chd9
Armc7
Flnb
Camk2b
Hmox1
Zc3h10
Rpl41
Aacs
Zscan25
Nfkbie
Trip6
Srrt
Mphosph10
Mcee
Napg
Mta2
H2bc1
H2ac1
Tmem151b
Zbtb40
Myo10
Erfl
Jund
Atp5g3
Pfdn5
Myg1
Pom121
Ddx20
Acp5
Sptbn1
Kash5
Iqcn
Sppl2a
Trmt1
Nacc1
Map7d1
Ttyh2
Rpl38
Caprin2
Mcrip2
Ppip5k2
Gin1
Wdr90
Psmf1
Vinac1
Ttl
Cebpe
Ubiad1
Mtor
Tsc22d1
Pdss2
Arl14ep
Cct8
Mogs
Dhx33
Wbp1
Ino80b
Mrps2
1700007K13Rik
Ahdc1
Ppp1r1b
Gemin6
Utp6
Upk3bl
Epb41l4a
Ccr7
Rhebl1
Kmt2d
Lats2
Dctpp1
Gnb1
Aftph
Polr1b
U2surp
Ptpru
Mecr
R3hcc1
Bloc1s5
Pycard
Misp
Dact3
Wtap
Rbm14
Gm21992
Isy1
Hus1
Zmynd15
Med11
Stil
Zscan12
Herc4
Plvap
Usp37
Cnot9
Nicn1
S100a14
Epas1
Cnmd
H3c11
H2bc22
H2ac22
H1f5
H2bu2
Atp5g2
Mif
Rnf187
Scfd1
Msra
Sf3b2
Gal3st3
2210016L21Rik
Cyp2w1
Psmd6
Dennd2c
Tmem220
Vps33a
Zfp660
Arhgef10l
Zcchc4
Ttll3
Rph3al
Reep2
Plekhb1
Filip1
Elf3
1700020L24Rik
Slc2a1
Slc29a3
Mrpl30
Mitd1
Zbtb17
Srarp
Eef1g
Camk2g
Plpp5
Fam243
Nfat5
Uspl1