ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX735282 | Unclassified
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◣ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Greb1
Nkx2-6
Hexb
Il31ra
Kpna1
Cldn34d
Txndc11
Aldh9a1
Fyco1
Chac1
Pknox1
Calcoco1
Ddx23
9430015G10Rik
Abhd6
Tmem125
Scrib
Olfr806
E030030I06Rik
Phf12
Cd209a
Gm10710
Dchs2
Olfr1274
Sspn
Cotl1
Fbxw4
Prcc
Osbpl1a
Cox8c
Csf2ra
Nr4a1
Fbxl18
Slc39a1
Crtc2
Nop14
Grk4
Pprc1
Kif2c
S1pr4
Ncln
Dusp2
Astl
Ap2m1
Usp48
Hsph1
Hspa5
Sharpin
Maf1
Cyc1
Gm35339
Vmn2r4
Htra2
Dqx1
Aup1
Car5a
Banp
Ccl1
Ltb
Tnf
Lta
Mrpl19
Dync1i2
Usp5
Cdca3
Zfp513
Snx17
Eif2b4
Dhx33
Clpb
Phlda1
Mtg1
Gm525
Proser1
Nhlrc3
Tctex1d4
Btbd19
Phb
Ppig
Fastkd1
Pramel32
Ifna13
Wwox
Chmp4b
Unk
H3f3b
Tmed2
Rilpl1
Psat1
Arl14ep
Il2
Krr1
Lsmem2
Naa80
Ifrd2
Hyal3
Aadacl2fm1
Setd4
Cbr1
Rptor
Mrpl44
Col6a6
Slc39a4
Cpsf1
Tmem88
Naa38
Cyb5d1
Tinf2
Nedd8
Gmpr2
Zfp945
Tmed9
B4galt7
Tmem101
Nabp1
Trp53rkb
Gtf2ird2
Rcc1l
Wdr70
Nup155
Dffb
Cep104
St3gal2
Clptm1l
Pex14
Cnot1
Mrpl39
Sphk2
Spaca4
Rpl18
Fam83e
Sectm1b
Chchd6
Syngr1
Rpl3
Rsph3b
Sepsecs
Tmem107
Slc25a10
Mrpl12
Timm13
Lmnb2
Phf20l1
Atp5o
Rpia
Plekhn1
Klhl17
Prmt6
C87436
Ap1g1
Tdp1
Efcab11
Gtf3c6
Tmem115
Nprl2
Cyb561d2
Rassf1
Zmynd10
Bicd2
Sympk
Foxa3
Dnah7b
Hspa8
Zfp207
5730455P16Rik
Cwc22
Poldip3
Pds5b
N4bp2l2
Stk25
Btrc
Slc35b4
Actr10
Opa1
Max
Alkbh8
Eapp
Plaa
Gm12657
Coro2a
Herpud1
Med6
Pigq
Nhlrc4
Mmachc
Ccdc163
Chmp6
Rdh14
H4c14
H3c13
H2bc18
Gatb
Vrk1
Atf6
R3hcc1l
Ndufc2
Ankle2
Jak2
Odc1
Pigu
Rel
Thap3
Phf13
Mrpl20
Ccnl2
Nup153
Frg2f1
Foxj3
Zfyve19
Dnajc17
Ncbp2
0610012G03Rik
Trip4
Pclaf
Rcc1
Usp31
Slc7a5
Tecpr1
Mrpl1
Ssrp1
P2rx3
Cerk
Ormdl3
Zfp369
Scaf1
Rras
Tbcd
Ube3c
Zfp189
Mrpl50
Katnal1
Trib3
Smarca4
Tex14
Dcp1a
Crebl2
Gsk3a
Guf1
Secisbp2
Cks2
Ap5s1
Prr5l
Commd9
Ctu1
Fam227b
Dtwd1
Cdh12
Rbl2
Tyw3
Cryz
Sec61a1
Mapkapk5
Pemt
Eef1a1
Nme1
Mrpl21
Ighmbp2
Celf2
Sectm1a
Mff
Nr1h3
Acp2
Gsdma2
Invs
Erp44
LOC666331
Gm11634
Dexi
Clec16a
Pfdn5
Myg1
Atg9b
Abcb8
Atp5g1
Zfp637
Slc7a11
Rhebl1
Kmt2d
Tmem214
Mapre3
Dcps
Ube2j2
Atg101
Smim41
Zfp949
Slc14a2
Vmn2r102
Wdr36
Marchf5
Cpeb3
Ptp4a2
Rps20
Wfs1
Zfp36l1
Capn15
Psmd7
Snx27
Gde1
Ccp110
Cstf1
Aurka
Tcof1
Lrrc59
Tspan4
Polr2l
Cd151
Tmem267
Map1lc3b
Gid4
Rsad1
Rabac1
Stau1
Med27
Rexo2
Rad23b
Dus1l
Ppp2r5b
Atg2a
Wdr25
Wars
Gpha2
Srp19
Uqcrh
Lrrc41
Zfp791
Pabpc1
Tent5c
Gtf3c3
Arid1a
H3c15
H3c14
H2ac19
H2ac18
Psmb2
Cnot2
Psmb5
Psmb11
Zbtb37
Pcbp1
Snw1
Dhx16
Mrps33
Ncbp3
Get1
Slc25a32
Dcaf13
Eefsec
Arl4d
Ndufb2
Vpreb1
Top3b
Igll1
Mrm3
Glod4
Metrn
Haghl
Ccdc78
Antkmt
Nemf
Rhot1
Asns
Rpp30
Mad2l1bp
Gtpbp2
Zmat5
Uqcr10
Tmem11
Dhrs7
Ddx47
Ccpg1os
Ccpg1
Cipc
Zfp729a
Tbc1d31
Ndufc1
Naa15
Tmem167b
Ctdp1
Brd3
Hmbs
H2ax
Dpagt1
Cdkl4
Mcl1
Zc3hc1
Pde6d
Cops7b
Kdm5a
Ccdc77
Trmt44
Acox3
Cep128
Hmx2
Bub3
Srp68
Galr2
Pcif1
Fam166a
Stpg3
Pten
Smg8
Rnf123
Mst1
Kbtbd7
Nelfb
Zfp870
Calm1
Zpr1
Bud13
Peli1
Rps21
Vps50
Hepacam2
Mrps15
Wnk1
Ptpn6
Grcc10
Tbrg1
2210016L21Rik
Stx18
Ubox5
Fastkd5
Map2k5
Pomp
Tmed10
Zc3h12c
Zar1l
Brca2
Nfkb1
Dnajc11
Shmt2
Ndufa4l2
Uqcc3
Ubxn1
Snrpd1
Esco1
Stx16
Poglut3
Agk
Taf5
Muc3
Cenps
Mrps25
Mars1
Tsnaxip1
Ranbp10
Fra10ac1
H4c12
H2bc15
H2ac15
Aaas
Rabggtb
Msh4
Rab1a
Klhdc4
Rbm17
Cdk9
Ythdf2
Tmem127
Ciao1
Gne
Wasf1
Cdc40
Ankrd46
Mfn2
Ccdc126
Terf2
Eif4ebp1
Pigg
Lcorl
Mettl15
Kif18a
Serpinh1
Nvl
Cnih4
Rab5c
H3c3
H2bc3
H1f2
Gm3448
Gm3417
9030025P20Rik
BC107364
Scfd1
Tchp
Ptcd3
Polr1a
Fam53c
Cdc25c
Ufl1
Cdkn2aipnl
Lars
Slc27a4
2700062C07Rik
Esr1
Fbxo15
Timm21
Ttc13
Arv1
Eif4a2
Sp1
Rabl6
Ccdc183
Slc39a13
M6pr
Hnrnpa2b1
Cbx3
Ndufs4
Rad50
Gem
Lemd2
Pspn
Clpp
Alkbh7
Acer1
Nbr1
Brca1
Zfp981
Rnf44
Thap11
Nutf2
Cenpt
Ppih
Commd2
Cdhr2
Pdcd1
Nfat5
Get4
Snrnp27
Cul2
Pus1
Ep400
Trmo
Ppp1r11
Znrd1as
Znrd1
Ube4a
Inpp5b
Iars
Bcat1
Borcs7
Wasf3
Eps15
Rpl31
Rab30
Tgm4
Rnf10
Coq5
Drg2
Bod1l
Cops8
Exoc2
H2bc6
H1f4
Eif2b5
Kat7
Dnajc16
Casp9
Med4
C2cd2l
Kmt2e
Mettl25
Ccdc59
Idh3b
Yars
S100pbp
Srprb
Btg1
Tmem168
Mrps35
Bod1
9130401M01Rik
Naa60
Ifrd1
Dguok
Tmem43
Chchd4
Mxra8
Aurkaip1
Gtf2a1
Pkmyt1
Pycrl
Gfus
Paqr4
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
Zc3h6
Csnk1a1
Gmfb
Cgrrf1
Ptprcap
Lancl2
Rnf6
Cdk8
Tdg
1190007I07Rik
Isy1
Rps6kb2
Ints4
Eif3g
Sfi1
Eif4enif1
Spty2d1
Cops7a
Leng8
Il2ra
Prkacb
Tbck
Aimp1
Cdk5rap2
Prmt3
Sirt2
Nfkbib
Skp2
Lmbrd2
Pdia6
Srsf2
Mfsd11
Mettl23
Jmjd6
Ulk2
Napepld
Chpf2
Abcf2
Nol10
Zfp691
Gm3435
Yars2
Lpcat2b
Btbd8
Dhx30
Dnajb9
Inpp5k
Rprd2
Tsfm
Gtf2h3
Eif2b1
Slc35a1
Eif2b3
H4c3
H1f6
Ccnl1
Atp5g2
Dnttip2
Dmap1
Sars
Cluh
Vta1
Taco1
Mphosph10
Mcee
Slc24a1
Ints14
Pxk
Rbsn
Snapc3
2610001J05Rik
Psmd12
Pitpnc1
Vamp1
Trmt12
Ccn4
Rundc1
Ptges3l
Aarsd1
Man1b1
Stim2
Fam219b
H2bc21
H2ac21
H2ac20
Polr2m
Dnajb12
Trdmt1
Ppp1r15b
Ncdn
AU040320
Cep120
Rps19bp1
Atf4
Rps8
Nelfa
Trmt10a
Mttp
Smn1
Rnf220
Ttll11
Ogfr
Mrgbp
Tspoap1
Vcpkmt
Col9a3
Wdr61
Ciao3
Epc1
Retsat
Elmod3
Fam193a
Wdr4
Ndufv3
Wbp2
Unc13d
Exo5
Zfp661
Mrps5
Plgrkt
Cd274
Ahcyl1
Map3k4
Taf11
Anks1
Ldah
Cnot10
Cwc27
Thap4
Atg4b
Adam17
Nbas
Olfr855
Olfr854
Pdcd7
Ell3
Rps27l
Oscar
Ndufa3
Vwa8
G3bp1
Atox1
Togaram1
Klhl28
Trmt5
Slc38a6
Nop16
Higd2a
Zbtb17
Srarp
Lrif1
Rab42
Sec22b
Ptrhd1
Cenpo
Fbxw8
Mrps7
Mif4gd
Gga3
Mrpl58
Nup54
Nudt15
Rad1
Brix1
Ptcd2
Mrps27
Pcbd2
Nmt1
Kif13b
H3c11
H2bc22
H2ac22
H1f5
Rfc4
Srrd
Hps4
Slc4a2
Cdk5
Zfp317
Zzef1
Cyb5d2
Zfp748
H4c4
H3c4
H2bc7
H2ac7
Gspt1
Pex3
Adat2
Tut1
Zfp706
Kpnb1
Snrpc
Olfm1
Thrap3
Tmem94
Coa8
Bag5
Ints9
Hmbox1
Taar6
Dph2
B4galt2
Atp6v0b
Taar7a
Dmac1
Il10
Tob1
Arf6
Dgat1
Med7
Trpc4ap
Rpl29
Acy1
Doc2g
Cd44
Zfp335
Prox2
Dlst
Ndufv1
Psca
Zbtb45
Jrk
Kcnt1
Actb
Taf12
Gmeb1
Cited2
Gabpb2
Ppp6c
Taf1d
4931406C07Rik
Mtmr2
Slc33a1
Alg1
Bms1
Zfyve1
Tmem242
Ints3
Brf1
Zdhhc3
Exosc7
Mkrn3
Pa2g4
Mterf4
Speer4e
Ddost
Adck1
Nsrp1
Ndufb8
Hif1an
Sec31b
Zc3h4
Ubqln4
Rab25
Lamtor2
Sfxn5
Uchl5
Ro60
Brpf1
Zbtb21
Gtf2f2
Abcc5
Zfp46
Fcmr
Mat2a
Znfx1
Tkfc
Ddb1
Ndufaf5
Esf1
Dcaf10
Tnfaip8l2
Tmod4
Scnm1
Lysmd1
Trak2
Prpf4
Cdc26
Cpox
H3c10
H2bc13
H2ac13
H2bc14
Tarbp2
Npff
Map3k12
Prmt5
Olfr1416
Ndufa10
Zfp738
Ndc1
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Hnrnpab
Srsf1
P4hb
Arhgdia
Wdr45b
Brms1
Mpzl3
B4gat1
Stc2
Tiparp
Ndfip1
Rbm33
Coq9
Ciapin1
Rpl27a
Haspin
Mtrex
Dhx29
Elp6
Nufip2
Spen
Cnot4
Tmem245
Tomm22
Gtf2b
Ndufs7
Zbtb11
Rpl24
Rps27rt
Rps27
Rab13
Knl1
Slc16a1
Bcl2l13
Hilpda
Fam71f2
Bola3
Man2c1
Wdr59
Gas2
Slc18b1
Rps12
Hnrnpa3
Atp6v1h
Rad18
Ube2v1
Tpgs1
Madcam1
Cdiptos
Cdipt
Foxk2
Ints5
Ganab
1810009A15Rik
Lbhd1
Gpn3
Fam216a
Rps24
Polr3a
Pnisr
Ppp1r12c
Hacd2
Rdx
Coq2
Vps4a
Fan1
Larp4
Cd80
Adprh
Myc
Pgp
Mlst8
Bricd5
Hus1
Caskin1
Wdr34
Ap2s1
Nudcd3
Nfkbil1
Ddx39b
Atp6v1g2
Tab1
Ccnd3
Rps7
Mnat1
Napg
Atxn2l
Itpr1
Taf8
Dlg4
Acadvl
Lef1
H4f16
H2aj
Eif5
Ndufa9
Akap3
Med17
Timm44
Cacybp
Parp2
Chd1l
Sohlh1
Chka
Ube2d3
Kmt2a
Nsa2
Gfm2
Tbp
Psmb1
Dusp12
Rsl24d1
H3c2
H2ac4