ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX735292 | Unclassified
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◣ SRX735292: Unclassified

◢ Cdk9: STRING

Greb1
Txndc11
Cldn34d
Il31ra
Nkx2-6
Chac1
Fyco1
Xcr1
Calcoco1
Hexb
Kpna1
Phf12
Scrib
Prcc
Ccl3
Ccl4
Ddx23
Car5a
Banp
Aldh9a1
Usp48
Phb
Sspn
Slc39a1
Crtc2
Lsmem2
Naa80
Ifrd2
Hyal3
Tmem125
9430015G10Rik
Ifng
Abhd6
Pex14
Ppig
Fastkd1
Rptor
Dync1i2
Mrpl19
Dusp2
Astl
Pprc1
Ap2m1
Nop14
Grk4
Usp5
Cdca3
Olfr806
S1pr4
Ncln
Olfr1274
Ccl1
Zfp513
Snx17
Eif2b4
Cotl1
Slc39a4
Cpsf1
Pknox1
Kif2c
Tinf2
Nedd8
Gmpr2
Tmem88
Naa38
Cyb5d1
Unk
H3f3b
Btrc
Sec61a1
Wdr70
Nup155
Sharpin
Maf1
Cyc1
Gm35339
Cd209a
Mtg1
Sympk
Foxa3
Xcl1
Dhx33
Cox8c
Phlda1
Psat1
Osbpl1a
Lrrc59
Opa1
Cwc22
Rpp30
Fbxl18
Plekhn1
Klhl17
Zfyve19
Dnajc17
Atp5o
Hmx2
Bub3
Hspa5
Rpia
Proser1
Nhlrc3
Zfp637
Mapkapk5
Dcps
Dnttip2
Sphk2
Spaca4
Rpl18
Fam83e
Gm10710
Dchs2
Zfp189
Mrpl50
Chchd6
E030030I06Rik
Chmp4b
Odc1
Pomp
Clpb
Mmachc
Ccdc163
Usp31
Med6
Hsph1
Ap1g1
Mrpl44
Ormdl3
Scaf1
Rras
Capn15
Dffb
Cep104
Nr4a1
Mff
Rps19bp1
Atf4
Gatb
Prr5l
Commd9
Kbtbd7
Pcbp1
Chmp6
Fam193a
Pafah2
Tmed2
Rilpl1
Timm13
Lmnb2
Csf2ra
Pigu
Ube3c
Timm22
Nxn
Rps20
Setd4
Cbr1
Col6a6
Med27
Arl14ep
Nfkbia
Trp53rkb
Gde1
Ccp110
Aaas
Wnk1
Alg10b
Krr1
Thap3
Phf13
Slc35b4
Lrif1
Ncbp2
0610012G03Rik
Il2
Cnot1
Tctex1d4
Btbd19
Tmem11
Kat7
Rbl2
Vcpip1
Gsk3a
Pemt
Tmem43
Chchd4
Lars
Naa60
Cep128
Herpud1
Zfp207
5730455P16Rik
Pds5b
N4bp2l2
Gm525
Snw1
Tex14
Hspa8
Sectm1b
Ints9
Hmbox1
Gtf3c6
Tmem115
Nprl2
Cyb561d2
Rassf1
Zmynd10
Slc33a1
Htra2
Dqx1
Aup1
Syngr1
Rpl3
Kdm5a
Ccdc77
Tsnaxip1
Ranbp10
Tmed9
B4galt7
Nabp1
Fbxw4
Pramel32
Ifna13
Invs
Erp44
Max
Dnah7b
Ap2s1
Ltb
Tbc1d31
Tnf
Lta
Calm1
Lemd2
Dexi
Clec16a
Psmd7
Nmt1
Atg101
Smim41
Rcc1
Rab5c
Wwox
Arid4b
Sepsecs
Crebl2
Cwc27
Zc3h12c
Ythdf2
Ipo13
Eef1a1
M6pr
Prmt6
Rel
Psmg3
Shmt2
Ndufa4l2
Stk25
Aadacl2fm1
Mettl25
Ccdc59
Tbcd
R3hcc1l
Pabpc1
Uqcc3
Ubxn1
Clptm1l
Rnf44
Tmem214
Mapre3
Wrap53
Trp53
Cdhr2
Tmem101
Gtf2ird2
Rcc1l
C87436
Rabac1
Bicd2
Dph2
B4galt2
Atp6v0b
Stc2
Sass6
Cmas
Palb2
Dctn5
Znfx1
Retsat
Elmod3
Edem2
Cltc
Tab1
Ctu1
Slc7a11
Rdh14
Cenps
Kat2a
Hspb9
Dhx58
Nr1h3
Acp2
Prkcsh
Ccdc151
Slc27a4
Ndufs4
Spty2d1
Snrpd1
Esco1
Cox7c
Dnajc16
Casp9
Tmem245
Cdk9
Nudt15
Tbck
Aimp1
Srp68
Galr2
Crtam
Slc7a1
Chordc1
Prim1
Hsd17b6
Snrnp27
Zfp945
Fam227b
Dtwd1
Zcwpw2
Azi2
Trip4
Pclaf
Pfdn5
Myg1
Trmt44
Acox3
Zfpl1
Vps51
Tmem262
Cdca5
Gm550
Wfs1
Yars
S100pbp
Tnfsf8
Cluh
Phf23
Gabarap
Dvl2
Ccdc126
Gpr84
Smg8
Btg1
Mrpl35
Immt
Pigq
Nhlrc4
Nup54
Cipc
Csf2
Ero1a
Rnf123
Mst1
Psmc6
Ncbp3
Tm7sf2
Ap5s1
Thg1l
Coro2a
Vps50
Hepacam2
Wdr36
Eapp
Eef1akmt4-ece2
Eef1akmt4
Alg3
Nme1
Enc1
Nelfa
Snrpc
Rps21
Drg2
Pcbp2
Nvl
Cnih4
Ubqln4
Rab25
Lamtor2
Rangap1
Ptcd2
Mrps27
Ndc1
Ube2j2
Togaram1
Klhl28
Mphosph10
Mcee
Psmb5
Psmb11
Lrrc8a
Sec24a
Sar1b
Psmd3
Mrps25
Mfn2
Zbtb4
Slc35g3
Polr2a
Slc39a13
Cstf1
Aurka
Nup153
Celf2
Zpr1
Bud13
Mrpl21
Ighmbp2
Eif2b5
Ptcd3
Polr1a
Brms1l
Ndufa9
Akap3
Mocs1
Cdk7
Fam53c
Cdc25c
Thap11
Nutf2
Cenpt
Klhl20
Zc3h11a
Zbed6
Nfkb1
Eif4a2
Sgms1
Zfp949
Sebox
Tmem199
Poldip2
Iqch
Aagab
Rab33b
Zfp369
Zfp870
Rsph3b
Rad18
Nup35
Ufl1
Dcp1a
Mrps33
Tmem94
Ippk
Vrk1
Hinfp
Gm3448
Gm3417
Tcte3
Ermard
Ddx47
Fitm2
Commd1
Cct4
Ttc4
Dgat1
Rhebl1
Kmt2d
Cnot2
Gtse1
Pole3
Alad
4933430I17Rik
Dmap1
Usp30
Svop
Atp5g2
Get4
Zfyve1
Faf1
Cdkn2c
Fam149b
Ecd
Wdr74
Stx5a
1700092M07Rik
Cerk
Snx18
Tmem168
Map1lc3b
Tkfc
Ddb1
Tarbp2
Npff
Map3k12
Cops7a
Pex3
Adat2
Rplp0
Gcn1
Cops8
Ube2g2
Vmn2r4
Cct8
Tsfm
Lpcat2b
Btbd8
Klhdc4
Sec13
Mib2
Tysnd1
Tecpr1
Ifrd1
Ndufs7
Trmt10c
Pcnp
Rps3a1
Blmh
Jak2
Cog7
Slc3a2
Gapdh
Rpl27
Ifi35
Ppp1r11
Dcaf10
Znrd1as
Znrd1
Taf12
Gmeb1
Hmbs
H2ax
Dpagt1
Gspt1
Pum3
Zfp738
Syt3
1700008O03Rik
Dus1l
Ppp2r5b
Atg2a
Gpha2
Rhot1
Tspoap1
Arl10
4833439L19Rik
Mbd6
Ddit3
Dhrs9
Stau1
Rexo2
Wbp2
Unc13d
Tfap4
9130401M01Rik
Lrrc51
Arfgef1
Trub1
Pdcd7
Il2ra
Slx4ip
Mkks
Rpl9
Lias
Atf6
Rad54l2
Rps23
Dnajc11
Rpl22
Bod1
Rnf207
Zfp296
Gemin7
G3bp1
Atox1
Cox7a2
Fra10ac1
Mrps15
Ttc13
Arv1
2610001J05Rik
Tmem107
Spns1
Lat
Slc24a1
Ints14
Pycrl
Gfus
Rpl8
Commd5
Sars
Mettl9
1110004F10Rik
Man1b1
Slc4a2
Cdk5
Ccpg1os
Ccpg1
Rfc4
Srp19
Rbm39
Psmb2
Kdm3b
Dhx30
Rtn2
Cdk5rap2
Tmed10
Actr10
Mtres1
Plaa
Gm12657
Ubxn11
Sdf2l1
Cd52
2610318N02Rik
Rab42
Nol10
Rbsn
Tcof1
Frg2f1
Foxj3
Cnot10
Gmfb
Cgrrf1
Kmt2a
Eif2b3
Rgs14
Lman2
Phospho1
Ndufs2
Adamts4
Mrpl58
Ptrhd1
Cenpo
Sdad1
Tpr
Odr4
Rpl36
Micos13
Eif4e2
Chrng
Rabl6
Ccdc183
Ppp6c
Mterf1a
Eps15
Zfp113
Cops6
Slmap
Nemf
Zar1l
Brca2
Aars2
Prpf4
Cdc26
Actb
Tcea1
Gtf2h3
Eif2b1
Hus1
Nudcd1
Eny2
Nek4
Itih1
Zfp791
Thoc1
Eefsec
Ece1
Arid1a
Mpzl3
Tut7
Cdkn2aipnl
Cox6c
Taco1
Gid4
Gm40193
Psmb6
Gltpd2
Espl1
Fbxo48
Fam187a
Eftud2
Ccdc103
Vps72
Pip5k1a
Ubr4
Cacybp
Kifc5b
Polg2
Ddx5
Cep95
Tspan4
Polr2l
Cd151
Rpl30
Erich5
Ate1
Dimt1
Sfxn5
Snx19
Eif5
Hacd2
Stx18
Mrpl30
Mitd1
Cant1
C1qtnf1
Mcl1
Hexim2
Mrpl39
Secisbp2
Cks2
Ddx1
Psca
Gpr15
Cldnd1
Mlec
Jrk
Larp4
Rab1a
Rpl5
Nsfl1c
Lsm12
G6pc3
Rpl27a
Trak2
Eif3g
Slc38a1
Ndufs3
Kbtbd4
Rbm34
Heatr5a
Sox5
Ptma
Ppip5k2
Gin1
2210016L21Rik
Mief1
Cdk5rap1
E130309D02Rik
Rpl13a
Flt3l
Rps11
Kctd5
Knl1
Rbm17
Lrwd1
Alkbh4
Tmem147
Gapdhs
Cxcr6
Zc3h10
Rpl41
Diaph1
Atg16l1
Zdhhc21
Ndufc2
Mxra8
Aurkaip1
Olfr1416
Ndufa10
Sdhaf3
Ctdp1
Trp53rka
Slc25a10
Mrpl12
Esr1
Tapbp
Rgl2
Hjurp
A730008H23Rik
Pde6d
Cops7b
Rbm22
Sf3b2
Gal3st3
Tchp
Ube2v1
Slc39a9
Erh
Gtdc1
Zfp729a
Brf1
Rnf39
Thap4
Atg4b
Zfp566
Zfp260
Pgs1
Med17
Arf3
Ric8b
Brwd1
Ptprcap
Psd
Fbxl15
Rps6kb2
Tatdn3
Nsl1
Wfdc21
Heatr6
Zbtb7b
Smim8
Pan2
Il23a
Gpaa1
Exosc4
Gars
Ints5
Ganab
1810009A15Rik
Lbhd1
Ppil4
Them4
Ciao3
Gm29733
Dntt
Tsg101
Rnf220
Napg
Ctbp1
Tpgs1
Madcam1
Ubb
Zbtb37
Ints12
Gstcd
Guf1
Asb8
Ccdc184
Actg1
Tmem167b
Gtf2b
Tra2b
Ndfip1
Rplp2
Zfp672
Sh3bp5l
Slc25a22
Pidd1
Pus1
Ep400
Tefm
Zdhhc4
Nrde2
Adora2a
Fem1b
Tyw3
Cryz
Cep135
Cd69
Pten
Nars
Epn1
Mad2l1bp
Gtpbp2
Dda1
Alkbh8
Rasa1
Mrpl34
Abhd8
Zranb3
R3hdm1
Alkbh3
Ube2z
Leng8
Dis3l2
Ccdc174
Ndufb5
Mrpl47
Rnf166
Iars
Twf1
Yars2
Pigg
Mtrex
Dhx29
Cnot8
Pcbd2
Lcorl
Smim13
Adrm1
Poglut3
Cul2
Tmem127
Ciao1
Cpped1
Polk
Cert1
Wasf1
Cdc40
Zfp661
Mrps5
Cdkl4
Ptpn6
Grcc10
Tmem248
Prr12
Prrg2
Nosip
Golga4
Rad1
Brix1
Ankrd46
Nuf2
Wdr5
Wdr25
Wars
Wdr34
Taf9
Rad17
Ak6
Cd3g
Cd3d
Srsf2
Mfsd11
Mettl23
Jmjd6
Myc
Ddx46
Ahcy
Fam168a
Gimap1
Gimap5
Marchf5
Cpeb3
Cd44
Tfeb
Rhbdd3
Ewsr1
Ncdn
AU040320
Git2
Ankrd13a
Ube4a
Sectm1a
Zfp607b
Map3k10
Cyp11a1
Atp2b2
Snrpd3
Gucd1
Mrpl53
Rps13
Ccdc142
Bub1b
Txnl4b
Dhx38
Sema6a
Epc1
Hnrnph3
Pbld2
Arfgap1
Zfp148
Psmf1
Rac3
Ybey
Mcm3ap
Pa2g4
Lrrc45
Cenpx
Prkch
Tti2
Atp5g1
Trmt5
Slc38a6
Desi2
Psmd4
Zfp606
Clcn4
Uspl1
Kdm6b
Rabggtb
Msh4
Lancl2
Plk3
Trmt10a
Mttp
Kcne2
Tbp
Psmb1
Smim11
Aftph
Txlnb
Vipas39
Ahsa1
Pcif1
Trmo
Siah2
Vars2
Gtf2h4
Unc45b
Nle1
Lyrm2
Rpf1
Josd2
Aspdh
Tsen15
Calm3
Adck1
Rcan3