ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9144816 | 3T3-L1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◣ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

H4f16
H2aj
H4c3
H1f6
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
H4c14
H3c13
H2bc18
H2bc6
Cxcl1
H4c4
H3c4
H2bc7
H2ac7
H3c15
H3c14
H2ac19
H2ac18
H3c3
H2bc3
H1f2
H4c17
H1f4
Cwc22
Slc35e3
Zbtb4
Slc35g3
Polr2a
Unk
H3f3b
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
H3c8
H2ac10
H4c8
Mt1
Mt2
Fth1
Tex14
H3c11
H2bc22
H2ac22
H1f5
Eif1
Mdm2
Ppbp
Cxcl5
Adamts1
Tsc22d1
Ftl1
Bax
Txnip
H2bc21
H2ac21
H2ac20
H2bc8
H2ac8
Yeats4
Rps19bp1
Atf4
Mat2a
Slc38a2
H3c2
H2ac4
H4c2
H4c1
H3c1
H1f1
Cldn34d
Actb
Zfp36l1
Ubc
Ppp1r10
Mrps18b
Atat1
H1f3
H3c6
H4c6
Herpud1
Nfkbia
Polg2
Ddx5
Cep95
Sqstm1
Eef1a1
Tuba1a
Gadd45a
Ubb
Pnrc1
Poldip3
Ppp1r12a
H2bc4
H2ac6
Ddit4
Eapp
Selenop
Hmgb2
H3c10
H2bc13
H2ac13
H2bc14
Cited2
Vim
Zfp36l2
Gtf3c6
Hnrnpa2b1
Cbx3
Clec2d
Btg1
Slc39a10
Sp1
Col1a2
Tti2
Nup62
Il4i1b
Atf5
H4c12
H2bc15
H2ac15
Kmt5b
Fam43a
Efcab2
Eif4a2
Gm3448
Gm3417
Tcte3
Ermard
Prdx2
Junb
Kif2c
Ints6
Chac1
Tob1
Ccl7
Ccl2
Srsf3
Srsf6
Gcat
H1f0
Gfpt1
Taf12
Gmeb1
Serinc3
Calm2
H4c11
Pcbp1
Smim10l1
Zfp655
Lag3
Ptms
Ddx3x
Slc25a4
Sned1
Fam53c
Cdc25c
Sp3
Ttc39d
Syngr1
Rpl3
Cdkn1a
Nsd3
Letm2
Slc3a2
S100a6
S100a5
S100a4
B2m
Tmsb10
Col1a1
Gem
Sirt4
Tuba1b
Uspl1
Zfand5
Itm2b
Usp4
Gpx1
Taf4
Ptp4a1
Ctnnb1
Casd1
Calm1
Znfx1
Atp6v0c
Amdhd2
Csf1
Irf1
Rnf103
Ier3
Flot1
Prdx1
Insig1
Arf6
Klf7
Cebpd
Raly
Epc1
Mgst1
Mbd6
Ddit3
Pcif1
Klhl24
Klf6
9530077C05Rik
Anln
Cdkn1b
Lrrc58
Gm36028
Sik1
Trib3
Resf1
BC005537
Map1lc3b
Amn1
Zfp1
Jund
Iqcn
Rhob
Angptl4
Pdk4
Hnrnpu
Zc3h6
Dglucy
Acadl
Ulk2
Ctsl
Crebrf
Rbm39
Fn1
Phlda3
Dennd6a
Hmgn2
Nfe2l2
Teddm1a
Glul
Plk2
Tut7
Hmox1
Slc35b2
Hsp90ab1
Sec62
Tmem167b
Arl15
Txndc11
Nfat5
Gstp2
Gstp1
Poglut3
Paip2
Son
Gm36712
Gart
Cdc42
Cebpb
Trmt10c
Pcnp
Ppp1r2
Hspa5
Btg2
Urgcp
Frs2
Zfp963
Psap
Oser1
Arl4d
Napepld
Mmp2
Uap1l1
Sapcd2
Dpp7
Srsf2
Mfsd11
Mettl23
Jmjd6
Hexim2
Sun2
Retreg2
Cnppd1
Slc23a3
Mif
Arhgap12
Eif5
Rap1b
Notch2
Gpr19
Rplp0
Gcn1
Fstl1
Acyp2
Baz2b
Tmem140
Pim3
Ptpn6
Grcc10
Gars
Trp53inp1
Alyref2
Zfp207
5730455P16Rik
Slc5a3
Mrps6
Arrdc3
Mak16
4931414P19Rik
Slc43a2
Tmem50a
Syf2
Rsrp1
Ccni
2010109A12Rik
Ptpmt1
Sppl2a
Agbl3
Litaf
Plin2
Ccng2
Stag1
Pck2
Odc1
Pot1a
Apc
Dpy19l4
Eif3a
Eif3e
Tmem107
Dnajb4
Fubp1
Asah2
Ep300
C3
Tmem168
Mrpl45
Nup107
Tmem128
Ptma
S100a10
Adnp2
Ppia
Eci1
Gsn
Gxylt2
Morf4l1
Kctd20
Pxt1
Rpl5
Cdkn2b
Stat3
Rdh14
Nde1
Marf1
Cxcl12
Flcn
AW549877
Gabarapl1
Mrps18a
Phf2
Rmnd5a
F3
Dynlt1b
Actg1
Matr3
Baiap2
Dynll1
Tmem209
Ssmem1
Rbms1
Pole4
Plpp3
Prrc2a
Sugp1
Mau2
Rgs2
Tm9sf3
Epc2
Ak3
Zfp236
Prdm5
Pdcd4
Asns
St7
Cebpg
Hexim1
Wtap
Fbxo4
Hmbs
H2ax
Dpagt1
1810013L24Rik
Cct2
H2bu2
Aven
Trim17
H3f4
H2aw
Mmp11
Gm867
Chchd10
Timp2
Clk1
Zscan25
Hipk3
Nsrp1
Luc7l2
Osr2
Bach1
Samd9l
LOC547349
H2-L
H2-D1
Kctd5
Ahnak
Trmt44
Acox3
Hbp1
Mknk2
Hmgn1
Tm2d1
Pkn1
Ppp1ccb
Ppp1cc
Rab43
Dusp10
1700056E22Rik
Rfc4
Hnrnph1
Zfp605
Plcxd1
Gtpbp6
Hspa8
Thbs1
Piezo1
Ddx19b
Aars
Atxn7l3b
Klf11
E030030I06Rik
Kntc1
Fnip1
Slc6a6
Pyurf
Slc18a1
Atp6v1b2
Spen
Ywhag
Mthfd2
Mob1a
Rab5a
Pan3
Tbc1d5
Abca3
Abca17
Zfp62
Mansc4
Klhl42
Kmt2e
Pnp
Fam227b
Dtwd1
Cltc
Trim35
Tbrg4
Smyd1
Krcc1
Pigt
Dbndd2
Rbm14
Gm21992
Clk4
BC049762
Rad23a
Pop7
Gadd45gip1
Dand5
Gigyf1
Pigv
Arrdc2
Rpl17
BC031181
Cald1
Nagk
Lyplal1
Rmdn2
Sptan1
Usp53
Pcmtd1
Tnfsfm13
Tnfsf12
Patj
Pkd1
Lrp6
Uhrf2
Spata25
Neurl2
Ctsa
Retsat
Elmod3
Fbxl3
Cpsf6
Gng12
Fam122a
H2-DMa
Brd2
Gls
Rrn3
Fbxo31
Usp34
Thbs3
Mtx1
Lcmt2
Adal
Lox
Hnrnpf
Ncoa5
Pdpk1
Col3a1
Sde2
Mbnl1
P4hb
Arhgdia
Cul1
Mos
Hspa9
Ghr
Cplane1
Zbtb44
Sppl3
Phkb
Itfg1
Cox20
Serinc1
Fus
Cd80
Adprh
Twf1
Mllt10
Skida1
Tmem223
Tmem179b
Zmiz2
Nip7
Cog8
Pdf
Zer1
Tbc1d13
Nop2
Ifi211
Trim39
Tax1bp1
Emc7
Wsb1
Mterf1b
Pura
Guf1
Bbs2
Mtg2
Mia2
Zfhx3
Csnk1a1
Zbtb11
Rpl24
Thap1
Tceanc
Parva
Vps36
Ckap2
Yap1
Amacr
Bdnf
Zdhhc21
Zfp69
Zfp143
Nfkbil1
Ddx39b
Atp6v1g2
Hnrnpa1
Cbx5
Gsto1
Zfp637
Atf1
Copb1
Dazap2
Zfyve1
Arhgef7
Ptn
Tbl1xr1
Chic2
Crbn
Zbtb38
Atp6v1h
Rdh5
Cd63
Ddhd2
Mdfic
Slc18b1
Zfp868
Rps12
Add3
Pggt1b
Nabp1
Zfp866
Eif4ebp1
Mrpl2
Klc4
Cul7
Kctd18
Dync1li2
Rab11fip2
Mkln1
Hhat
Ywhaz
Ndfip1
Slc7a5
Atp5g3
Ptrhd1
Cenpo
Rufy1
Adnp
Arl14ep
Usp16
Seh1l
4930453N24Rik
Lrrc61
Atp23
Spg11
Rnh1
Hnrnpll
Ncoa3
Heatr4
Acot2
Hexa
Gpr85
Acbd5
Adam10
9030025P20Rik
Ctdsp1
Smim14
Pcmtd2
Rpl39
Hsp90aa1
Pafah1b2
Irs2
Sem1
Asap1
Tet3
Atp6v1e1
Rbm33
Zfp119a
Rchy1
Hdhd2
Ing3
Gngt1
Gng11
Gpx4
Pafah1b1
Tmem39a
Camk2d
Lin7c
Poglut1
Stat6
C330018D20Rik
Cdkn2a
Nfkbiz
Zfp869
Malsu1
Susd6
Tomt
Lamtor1
Anapc15
Kdm3a
Kdm5b
Rprd2
Scnn1a
Ltbr
Mmadhc
Smad1
Slc5a6
Cad
Atraid
Mri1
D8Ertd738e
Kiz
Idua
Dgkq
Slc26a1
Ankrd12
Itgb1
Birc2
Ube2l3
Rimbp3
Sft2d3
Psma3
Rpl15
Nkiras1
Rad9a
Ppp1ca
Tbc1d10c
Ccnl1
Rps20
Rab7
Ube2d3
Siah1a
Rhof
Setd1b
Cat
Cdx1
Pdgfrb
H3c7
H2bc9
Map2k2
Creb3l3
Sod1
Ddx6
Mocs3
Dpm1
Gm10130
Tmem125
Nrbp1
Mios
Prkag1
Vamp8
Vamp5
Phgr1
Ccdc9b
Tra2a
Taok1
Ube2b
Cdkl3
Kpna2
Ubxn8
Ppfibp1
Cul5
Zc3h15
Pum2
Zfr
Spata1
Gng5
Itfg2
Rmi1
Hnrnpk
Nptn
Usp38
Tasor
Sv2a
Sf3b4
Rpl32
4833420G17Rik
Plin5
Plin4
Parp11
Rad52
Wwp2
Sdc4
Fgfbp3
Btaf1
Ube2v2
Nedd4
Manbal
Tubg1
Retreg3
Zfp248
Mxd4
Insr
Tmem106b
Zbed5
Chchd2
Nfyc
Tomm34
Stk4
Nrf1
Hlcs
Tmem165
Lamp2
Aip
Mrpl40
Hira
Tmem134
Gpd2
Gm20346
Pccb
Anp32a
Polr2m
Mmaa
Haus1
Atp5a1
Il6ra
Cyb561d1
Atxn7l2
Ifi27
Ddx24
Ifi27l2a
Trdmt1
Mogs
Mrpl53
Ccdc142
Rbm12
Cpne1
Golga1
Abcc1
Camkk2
Calr
Aasdh
Vps37a
Cnot7
Pank2
Snx13
Pabpc1
Rnf10
Coq5
Raf1
Selenot
Trmt10a
Mttp
Strap
Mrps35
Fbxw11
Pet117
Kat14
Spred1
Zbed3
Rep15
Ahnak2
Egf
Gpr137b
Zmat2
Gtdc1
Ubr2
Nsd1
Btbd3
Ppp1r15a
Plekha4
Mrpl20
Ccnl2
Pkm
Tmf1
Mcrip2
Zfp638
Wfikkn1
Mettl26
Scaf11
Bpnt2
Nudt3
Nsun3
Ero1a
Relb
Zmat1
Il6st
Ankrd37
Maea
Ppp1r3c
Kbtbd3
Fcho2
Id1
Chka
Rab22a
Hspa1b
Sgo1
Atxn2
Gpr155
Usp24
Anapc4
Wdr19
Slc25a24
Zeb2
Wnk1
Dusp11
Washc4
Aldh1l2
Hnrnpdl
Enoph1
Ddx17
Cnot6
Eif4g2
Ier5l
Egln2
Mob1b
Ghitm
Chd4
Tcp11l2
Ncl
Txn1
Ubald1
Mgrn1
Nubp1
Rbbp6
Ndufv2
Zc3h4
Nuak1
Slc17a7
Pih1d1
Aldh16a1
Washc1
Thbs2
Utrn
Setd7
Zfp507
Fam166a
Stpg3
Tubb4b
Slc34a3
Brpf3
Rnf111
Cdk9
Rhbdl1
Gnb2
Wasf2
Slc35a3
Rhot2
Gm3435
Hnrnpa3
Zfp959
Zmym2
Ccdc91
Prss23
Lig3
Msl1
Obi1
Bmf
Kdm6b
Eif3d
Gtf2i
Tigd2
Rtkn
Sdccag8
Cep170
Prrx2
Ier2
Gtf2b
Uqcc3
Rps8
Arl8b
Ift46
Arcn1
Kat6a
Ints5
Ganab
1810009A15Rik
Pskh1
Nrn1l
Lbhd1
Champ1
Rnf146
Metap1d
Sf1
Sox9
Stk35
Tnks2
Cep295
Smo
Eif3c
Dync1h1
Timm44
Srd5a3
Patl1
Galnt11
Sltm
Plekhm3
Tmem175
Gak
Psmd5
Cutal
Fnta
D2hgdh
Tbc1d9b
Zfp326
Uba6
Tmem192
Hdac4
Erbin
Adamts5
Dnaja1
Ptpn2
Sars
Wdr4
Ndufv3
Topbp1
Spaca6
Spag6
Tpk1
Crot
Gnb1l
Atp6v1g1
Lbh
Kdm5a
Ccdc77
Pten
Rab33b
Nars
Eif2s2
Fam13b
C1d
Tmem17
Anxa2
Zfp874b