ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX255482 | MEF
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◣ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Srsf2
Mfsd11
Mettl23
Jmjd6
Polg2
Ddx5
Cep95
Syngr1
Rpl3
Ttc39d
Unk
H3f3b
Actb
Fus
Ddit4
Ubc
Sp1
Tuba1b
H4c14
H3c13
H2bc18
Ier3
Flot1
H3c15
H3c14
H2ac19
H2ac18
Tuba1a
Setd5
Rps19bp1
Atf4
Tmem125
Cirbp
Fam174c
H4c11
Mat2a
Ppia
Fth1
Anapc5
Calm1
Hnrnpa2b1
Cbx3
Errfi1
Id3
H2bc21
H2ac21
H2ac20
Chrac1
Tpm1
Insig1
Pdlim7
Prdx2
Junb
H1f3
H3c6
H2bc8
H2ac8
Ldha
Gm3448
Gm3417
Gm3435
Puf60
Zfp866
Slc3a2
Usp4
Gpx1
Dusp1
Fam53c
Cdc25c
Urgcp
H4bc24
H2bc23
H2ac24
H2ac23
H4c17
Rplp0
Gcn1
Ptbp1
Ptpn2
Ccn1
Id1
Tmem50a
Syf2
Rsrp1
H2bc6
H4c4
H3c4
Irf1
Pkm
Smarcb1
Ier2
Wdyhv1
Atad2
Tob1
Sdc4
P4ha1
Hbegf
Ncl
Timp2
Ndufs7
Eef1a1
Mcl1
Zbtb4
Slc35g3
Polr2a
Mknk2
Mthfd2
Mob1a
Col1a1
Nol12
Lgals1
Mif
Hnrnpab
Ptgs2
Ftl1
Bax
G3bp1
Atox1
9030025P20Rik
Map2k2
Creb3l3
Gm525
Kansl2
Klf7
Nabp1
Slc9a1
Sgf29
Eci1
Klhl9
Rps20
Fasn
Ccn2
H3c8
H2ac10
H4c8
Ier5l
Taf12
Gmeb1
Cd24a
Zfp963
Gapdh
Fam166a
Stpg3
Tubb4b
Slc34a3
Tmpo
Bclaf1
Pcnt
2610028H24Rik
Dele1
Tmem123
Vim
Znfx1
Trib3
H2az1
Dnajb14
Poldip3
Nfkbia
Birc2
Hspa1b
Ppp1r10
Mrps18b
Atat1
Rcc1
Tob2
Cds2
Tmem230
Pcna
Dnajb12
Fam83a
Def8
Tex14
Hspa5
Pcif1
H4f16
H2aj
Hsp90aa1
Nubp1
Jpt1
Amotl2
Gm13285
Gm13290
Gm13289
Ifnz
Gm13272
Sgk1
Usp18
Prdx1
BC005537
Zfp119b
Ebi3
Hnrnph1
Washc4
Aldh1l2
Sqstm1
Mrpl35
Immt
Aldoa
Ppp4c
Smarcc2
H2-DMa
Brd2
Tmem129
Tacc3
Slbp
Csf1
Cstb
Slc25a4
Matr3
Actg1
H3c2
H2ac4
H4c2
H4c1
H3c1
H1f1
Socs3
Knl1
Scamp4
Adat3
Zfp53
Btg1
S100a10
Gpr19
Atp6v0c
Amdhd2
Tmem79
Smg5
Parp10
Grina
Plau
Nufip2
Nup62
Il4i1b
Atf5
Alg1
H3c3
H2bc3
H1f2
Snx5
Mgme1
Mphosph9
2810006K23Rik
Eif4a2
Dnajb4
Fubp1
Hmox1
Fbxo31
Tnfrsf12a
Thoc6
Hcfc1r1
Cldn6
Uba2
Cldn9
Gnb1l
Kdelr1
Grin2d
H3c10
H2bc13
H2ac13
H2bc14
Tmsb10
Ahnak
Nsrp1
Nfe2l2
Kat7
Ndufaf3
Impdh2
Dalrd3
Rab5b
Cdk2
Swap70
Ctnnb1
H4c12
H2bc15
H2ac15
Gm13287
Gm13279
Gm13278
Gm13275
Gm13277
Gm13276
S100a6
S100a5
S100a4
Amacr
Tcte3
Ermard
Gtf3c6
Pfkl
Slc35b2
Hsp90ab1
Rsph3b
H3c11
H2bc22
H2ac22
H1f5
Acer3
Dnajb1
Napepld
Serinc1
Slc12a4
Sike1
Slc38a2
Pdss2
Zfp433
Gm32687
Usp10
Hsf1
Bop1
Ostm1
Fam227b
Dtwd1
Zfp598
Cse1l
Eif4a1
Cd68
Senp3
Pik3r3
Actn4
Pkd1
Zfp36l1
Cltc
Tuba1c
Mettl25
Ccdc59
Rps27rt
Rps27
Rab13
Seh1l
AU041133
Tcirg1
Ndufs8
H2bc7
H2ac7
Shc1
Zmat2
Pygo2
Pbxip1
Wdr81
Tlcd2
Larp4
Spg11
Rad50
Kdsr
Ier5
Pole4
Tnfrsf1b
Atf1
Commd10
Rnd1
Sod1
Irf2bpl
Hexb
H2bc1
H2ac1
Eed
Dnaja1
Slc7a5
Pofut2
Tubb2a
Slc16a1
Aars2
Epc1
Armc5
9130023H24Rik
Tgfb1i1
Polg
Srsf6
Arrdc2
Atxn10
Cldn34d
Trmo
Tfrc
Rnmt
Fam210a
Deaf1
Egr1
Tti2
Cdkn2b
Iba57
Lcmt2
Adal
Ncaph2
Lmf2
Rrm2b
Psap
Tmco1
Ddx59
Klf10
Mgat1
Bsg
Eapp
Baiap2
Ssbp1
Myo5a
Zfp672
Sh3bp5l
Hdhd2
Eif5
Nt5m
Cops3
Coq10a
Ankrd52
Eef2
Dapk3
Calm2
Pias4
Ano6
Slc29a3
Pkmyt1
Utp18
Mbtd1
Tmem167b
Myl12a
Gm13288
Morc2a
Utp14b
Acsl3
Zc3hav1
Uvrag
Ubb
Gcat
H1f0
Tab1
Cdc42ep1
Sephs2
Ppp1r15a
Plekha4
Fscn1
Lmbr1l
Grb2
Tmx4
Rabif
Pithd1
Tango6
H4c6
H3c7
H2bc9
Uqcr11
Mbd3
Agpat2
Pmf1
Dse
Hspa8
Thbs1
Ifi211
Tmem175
Gak
Aacs
Birc6
Inpp5k
Psmg4
Lipt2
Gls
Ranbp2
Zzz3
Abcd3
Mok
Zfp839
B2m
Lbh
Nabp2
Slc39a5
Eif3a
Atp5g2
Srek1
Rnf111
Glo1
Mtfr2
Pigq
Nhlrc4
Paip2
Ran
Abraxas2
Eef1akmt2
Pacc1
Nenf
Taf4
Rrn3
Prr12
Prrg2
Nosip
Mfsd5
Phtf1
Tmem198b
Dnajc14
Serinc3
P4hb
Arhgdia
Rplp1
Cpt1b
Chkb
Tcerg1
Hint3
Ogfod1
Nudt21
Fadd
Arhgap28
Ywhaz
Zfp959
Slc20a1
Cers5
E130311K13Rik
Ptges3
Bhlhe40
Otub1
Ptpa
Crat
Sowahc
Septin10
Mvb12a
Bst2
Cxcl1
Zfand5
Sirt4
Usp53
Ttc17
Reep3
Nfkbiz
H2bc4
H2ac6
Gtf2a1
Rabggtb
Msh4
Cox20
Gm9949
Adrb2
Plk2
Gtf2b
Rhof
Setd1b
Ptk2
Phf20
Reep5
Klf2
Azin1
Tekt2
Adprhl2
Ndrg1
Lmna
Dync1h1
E2f7
Rnf10
Coq5
Plec
Topors
Smim27
Ndufb6
Rbm33
Rps13
Glce
Atf7
Lsm2
Hspa1l
Hspa1a
Prx
Efcab2
Hmbs
H2ax
Dpagt1
Prkar1a
Pcmt1
Tdg
1190007I07Rik
Nup43
Zfp36l2
Uhmk1
Oaz1
Rnf216
Epha2
Chac1
Srsf5
Srp68
Galr2
Epg5
Sec61a2
Coa8
Bag5
Slc26a6
Top2a
Tspan15
Uspl1
Ctsl
Rpl13
Zdhhc3
Exosc7
Rnpep
Josd1
Gtpbp1
Brms1
B4gat1
Cebpb
Pnrc1
Slc25a3
Septin11
Smdt1
Ndufa6
Anxa2
Ptprk
Timeless
Mip
Eif1
H1f4
Vcl
Pcbp1
Nsd3
Letm2
Kctd20
Cutc
Cox15
Pxt1
Zfp689
Specc1l
Dnajc19
Jpt2
Med1
Cdk12
Sptan1
Rps6
Dynll2
Yap1
Sparc
Zkscan8
Olfr1366
Pik3cb
Lrrc20
Tcim
Rpl10a
Myo1g
Rufy1
Nop58
Grin2c
Fdxr
Pdxp
Tubb6
E4f1
Birc5
Flot2
Dhrs13
Vps54
Mrfap1
Cmtr1
Gdpd1
Arl5c
Plxdc1
Eprs
Rtn4
Tmco6
Ndufa2
Ik
Afg3l1
Cavin3
Rmdn1
Cpne3
Atp6v0e
Txlna
Wsb1
Rnf14
Zranb2
Gamt
Dazap1
Ankhd1
Wbp4
Elf1
Flcn
Vps36
Ckap2
Rab11a
Prune1
Mindy1
Itpr3
Slc2a1
Rnpc3
Ccdc62
Cav2
Pus7l
Irak4
Rhob
Taf13
Ep300
Rfx3
Slc5a6
Cad
Atraid
D17H6S53E
Lsm14a
Amd2
Amd1
Pgp
Mlst8
Bricd5
Bag6
Apom
Ly6g5b
Gpank1
Csnk2b
Caskin1
Ubap2
Uck2
Jund
Iqcn
Hnrnpa1
Cbx5
Hmgcr
Dhx9
Sp2
Zdhhc17
Sesn1
F2r
Cep57l1
Tsc22d1
Zc3h6
Mbd6
Ddit3
Pafah1b1
Cdr2l
Agbl5
Skp1
Nuak1
Ksr1
Spag7
Heatr4
Acot2
Ate1
Ddx21
Ccn4
Itga5
Spen
Snai1
Doc2g
Arrdc5
Asph
Tbx10
Nudt8
Spats2
Vwa1
Uhrf1
Tmem88b
Ankrd65
Cd80
Adprh
Npm1
N6amt1
Plin2
Rbbp8
Lekr1
U2af1
Cdca4
Snx15
Sac3d1
Nprl3
Hba-x
Ulk2
Zfp36
Plekhg2
Hspa9
Ube2g1
Nfe2l1
Aip
Rdh5
Cd63
Dusp10
1700056E22Rik
Tmem134
Polr3b
Mtap
Serpine1
Slc18b1
Rps12
Naca
Slc17a7
Pih1d1
Aldh16a1
Kdelr2
Tmem256
Plscr3
Nlgn2
Cavin1
Sertad1
Drg1
Rhbdl1
Nae1
Car7
Dis3l
Rhot2
Gsk3b
Amn1
Zfp637
Parva
Cap1
Zscan25
Hmga2
Dtwd2
Angel2
Nus1
Fignl1
Gm4312
Gm4307
Gm4305
Gm4303
Gm4302
Gm4301
Srsf3
Gpx4
Ipo7
Zfp568
Ppdpf
Zfp771
Dctpp1
Gm13286
Gm13283
Gm13271
Fxr2
Bola1
Hp1bp3
Bbc3
Tymp
Sco2
Odf3b
9530077C05Rik
Txn1
Anln
Mcrip2
Wfikkn1
Mettl26
Gxylt1
Cfap97
Cep43
Mnd1
Zfp800
Nol7
Hk1
Ercc4
Cited2
Arl4d
Mrpl45
Psmd7
Rpl5
Chka
Zfp692
Trp53rka
Fam122a
Hmgxb3
Map2k1
Sp4
Pdcd2
Phlda3
Arl14ep
Cd164
Ttc7
Snx3
Tjp3
Pip5k1c
Ccnl1
Zfp655
Wdr4
Ndufv3
Mrpl33
Ipmk
Cisd1
Osbpl8
Arhgap29
Dph6
Prpf38a
Orc1
Slc44a1
Ddah1
Nupr1
Plpp2
Pdlim5
Zfp868
Rpl17
BC031181
Tcf25
Zglp1
Nars
Adss
Kitl
Ybey
Mcm3ap
Grpel2
Pttg1ip
Tnrc18
Stmn1
H4c3
H1f6
Ppp1r12a
Mrpl20
Ccnl2
Timm13
Lmnb2
Maff
Eif6
BC029722
Hdac7
Clip1
P2rx4
Fads2
Pcbp3
Cflar
Fgfbp3
Btaf1
Kpnb1
Tapbp
Pdcd6ip
Rnaset2b
Rnaset2a
Hjurp
A730008H23Rik
Ubl7
Ttc9c
Hnrnpul2
Spg20
Hddc2
Zbtb22
Bbs10
Zfp74
Zfp282
Wdtc1
Cdkn1a
Btg2
Tarbp2
Npff
Map3k12
Hlcs
Grasp
Gtf2f1
Rufy2
Sf3b5
Rad54b
Oas1g
Wdr45b
Csnk2a1
Esyt1
Tpt1
Zfp1
Rad23a
Calr
Elk4
Cdkn1b
Secisbp2
Cks2
Pank2
Zfp119a
Pyurf
Esd
Osgin2
Focad
Zfp869
Camk2d
Susd6
Slc25a46
Mtres1
Zfp523
Mcm9
Hmgb2
Ptma
Gabpb2
Rps8
Frmd6
Gars
Mrps18a
Cnpy3
Luzp1
Scpep1
Ostf1
Nmrk1
Fubp3
Trmt112
Prdx5
Vgll3
Fam102a
Romo1
Nfs1
Herpud1
Hnrnpu
Ube2z
Ppp2ca
Tsg101
Atf3
Rpl7l1
Zfp213
Plpp1
2310039H08Rik
Wipi1
Ctnna3
Slc38a7
Smad4
Zfp7
Zfp251
Ptcra
Fmn1
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Sec61a1
Sp3