ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620287 | NIH/3T3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◣ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Txndc11
Sspn
Il31ra
Aldh9a1
Hexb
Kpna1
Greb1
Cerk
Dnah7b
Nkx2-6
Pgk1
Gm10710
Dchs2
Col6a6
Rsph3b
Errfi1
Cldn34d
Egr1
Ccn1
Rsph3a
Actg1
Zfp945
Cd209a
Thbs1
Osbpl1a
Olfr1274
Serpine1
Actb
Ccn2
Plk2
Tmem18
Tmem125
Ubc
Abhd6
Olfr806
Ptgs2
Dusp1
Nr4a1
F3
Gm525
Dusp5
Flnc
Pramel32
Ifna13
E030030I06Rik
Zfp791
Fos
Fbxw4
Vim
Cox8c
Vmn2r4
Lox
Pknox1
Phlda1
Atp5g1
Gm13285
Gm13290
Gm13289
Gm13287
Gm13279
Gm13278
Gm13275
Gm13288
Abca3
Abca17
Ier5
Wwox
Gadd45g
Setd4
Cbr1
Sgk1
Speer4f1
Pald1
Ifrd1
Aadacl2fm1
Zfp598
Npw
Msmo1
Dcaf5
Fn1
Btg2
Ier2
Prkca
Zc3h6
Ier3
Flot1
Id3
Hgsnat
Ubtfl1
Trib1
Acta2
Unk
H3f3b
Fosl2
Prdx2
Junb
Frmd6
Csf1
Zfand5
Myh9
Id1
Cuedc1
Oasl1
Itga5
Vcl
Ccnl1
Eif1
Ddx1
Syn2
Plcb1
Jun
Cdca7
Mt1
Mt2
Klf6
Hmgcr
Rnft1
Tob1
Actr3
Lbh
Mmaa
Mat2a
Shc1
Flad1
Cks1b
Lenep
Ube2b
Cdkl3
Trim50
Fkbp6
Dnajb4
Fubp1
Mcl1
Tpm1
Esyt2
Tspan9
Atp2c2
Camk2d
Rheb
Ncbp2
0610012G03Rik
Tubb6
Rel
Cdkn2aipnl
Fer
Rps19bp1
Atf4
Sf3b1
Nrbp1
Uhrf1bp1l
Itgb1
Mtdh
H3c15
H3c14
H2ac19
H2ac18
Hmox1
Mideas
Sfi1
Eif4enif1
Ifnz
Gm13272
Egr2
Gm13277
Gm13276
Arpc2
Egr3
Wdr81
Tlcd2
Palld
Noct
Rps6
Rraga
Ttc4
Klf7
Rnf11
Ahnak
Tle1
Ccdc88a
Mtf2
Ankrd40
Kansl2
Gm3448
Gm3417
9030025P20Rik
Prl2c2
Prss23
Tnfrsf12a
Thoc6
Hcfc1r1
Cldn6
Tbc1d31
Cldn9
Taf1d
4931406C07Rik
Cyth3
Gm4869
Cltc
Calm2
S100a6
S100a5
S100a4
Rtn4
Arc
Epb41l2
Phlda3
Dgat1
Mterf1b
Wtip
Cartpt
Lmna
Cldn12
Tnc
Tjp2
Zscan21
Jmjd1c
Gm3435
Mterf1a
Gdf3
Zbtb4
Slc35g3
Polr2a
H4f16
H2aj
Tex14
H4bc24
H2bc23
H2ac24
H2ac23
H4c14
H3c13
H2bc18
H4c3
H1f6
H4c18
H2bc6
Cxcl1
H3c3
H2bc3
Cwc22
H4c4
H3c4
Polg2
Ddx5
Cep95
H2bc7
H2ac7
H1f2
H1f3
H3c6
Jund
Iqcn
H2bc8
H2ac8
Csf2ra
Fth1
Eef1a1
H3c11
H2bc22
H2ac22
H1f5
Hnrnpa2b1
Cbx3
H3c8
Eapp
Ube2a
Eif4a2
H1f4
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Ttc39d
Ppp1r10
Mrps18b
Atat1
Fyco1
Hspa8
H4c17
Arf6
Hspa5
Syngr1
Rpl3
Btg1
Nfkbia
H4c6
Tsc22d1
Nemf
H2ac10
H4c8
Kif2c
Taf12
Gmeb1
Ubb
Ppia
Slc35e3
Poldip3
Zfp143
Ctnnb1
Nabp1
Mdm2
Ftl1
Bax
Acacb
H3c2
H2bc21
H2ac21
H2ac20
H2ac4
Fam53c
Cdc25c
H4c2
Raly
H4c1
H3c1
Gtf3c6
Ddit4
Sp1
Cited2
Arl4d
Tecpr1
Fam227b
Dtwd1
Srsf2
Mfsd11
Adamts1
Zyx
H3c10
H2bc13
H2ac13
Calm1
Chac1
Fbxl18
Zfp949
Mettl23
Jmjd6
Tmem267
H2bc14
Zfp36l1
Fus
Cdkn1a
Slc38a2
Rplp0
Gcn1
Sdc4
Cirbp
Cebpd
Sirt4
Sqstm1
Cdh12
Tcte3
Ermard
Herpud1
Cebpb
Nfkbiz
Fam174c
Slc14a2
Pnrc1
Zfp36l2
Tpt1
BC005537
Txnip
Ppp1r12a
Rps29
Lrr1
Lima1
Sympk
Prdx1
H1f1
Clcn4
Olfr855
Olfr854
Znfx1
Pcif1
Scrib
Ulk2
Tmem107
Tuba1c
Clec2d
Calcoco1
Yeats4
Srsf5
H2-DMa
Tmem167b
Odc1
Ptp4a1
Efcab2
Hsp90aa1
Tuba1a
Sik1
Eef2
Dapk3
Rbm39
Nfat5
Hmbs
H2ax
Dpagt1
Srsf6
Rgs2
Brd2
Dnaja1
Srsf3
Slc35b2
Litaf
H2bc4
H2ac6
Pcbp1
Rps20
Dnajb1
Ddx3x
Slc25a4
Uspl1
Ap1g1
Myl12a
LOC547349
H3c7
H2bc9
Hsp90ab1
Tuba1b
Slc3a2
Vmn2r102
Hnrnpu
Ywhaz
Tiparp
H4c11
Ints6
Ccl7
Serinc3
Tti2
Zfp36
B2m
Epc1
Cdc42
Nup62
Il4i1b
Atf5
Rhob
Hnrnph1
Tmem123
Timp2
Car5a
Banp
Ddx23
Usp4
Gpx1
Zfp869
Rptor
Zfp513
Snx17
Eif2b4
Tra2a
Hnrnpab
Rcc1
Ccl2
Eif5
1810013L24Rik
Hexim2
Gtf2b
Plekhg2
Kmt2e
Taf4
Zfp207
5730455P16Rik
H2-L
H2-D1
Col1a1
9430015G10Rik
Setd5
Eif4a1
Cd68
Cnot1
Dync1i2
Mrpl44
Insig1
Med1
Cdk12
H4c12
H2bc15
H2ac15
Rap1b
Selenop
Dstn
Stat3
Pabpc1
Larp4
Ncl
Amn1
Kntc1
Flna
Emd
Zfp963
Ppbp
Pole4
Pdlim5
Napepld
Sde2
Tmem50a
Syf2
Rsrp1
Phf12
Tmsb4x
Hmgb2
Smim10l1
Tmed2
Rilpl1
Zfp1
Lag3
Gapdh
Aaas
Xcr1
Scaf1
Rras
Nfe2l2
Ppp1r15a
Plekha4
Hif1a
Mbd6
Ddit3
Rnf10
Coq5
Chmp4b
Resf1
Crem
Urgcp
Pus1
Ep400
Ndufs7
Retsat
Elmod3
Rad23a
Trib3
Mknk2
Gcat
Coq10b
Zfp655
G3bp1
Atox1
Tmem129
Tacc3
Slbp
Ptms
Sptan1
Wsb1
Slc18b1
Irf1
Pkd1
Prcc
Pim3
Zfp868
Cxcl5
Atp6v0c
Amdhd2
Tmsb10
Senp3
Nfkbil1
Ddx39b
Atp6v1g2
Rdm1
Gem
Mrpl20
Ccnl2
Slc25a3
Wnk1
H1f0
Calr
Rps12
Tob2
Kmt5b
Cfl1
Gls
Trmt10c
Pcnp
Ppp1r2
Eif3a
Eif3c
Zbtb37
Socs3
Pdss2
Tra2b
Klf2
Uqcc3
Pdlim7
Rpl10a
Taf13
Matr3
Teddm1a
Glul
Slc9a1
Fstl1
Tctex1d4
Btbd19
Opa1
Adnp
Nufip2
Nip7
Cog8
Son
Gm36712
Gart
Ctsl
Pprc1
Ppig
Gm14595
Gm14590
Pds5b
N4bp2l2
Arrdc2
Rabgef1
Spen
Piezo1
Rnf19b
Fam166a
Atp2a2
Snx5
Mgme1
Eif4g2
Fosb
Mettl25
Ccdc59
Ldha
Stpg3
Usp48
Map2k2
Creb3l3
Ywhag
Tmem168
Csrnp2
Srsf1
Aff4
Raf1
Bach1
Ptpn2
Zbed5
Chchd2
Map1lc3b
Sec61a1
Hnrnpa1
Cbx5
Birc2
Csnk1a1
H2-K1
Ptpn6
Grcc10
Hnrnph3
Morf4l1
Sp3
Ndel1
Mthfd2
Mob1a
Copz1
Ptma
Cds2
Baiap2
Cpeb2
Chrac1
Chmp6
Slc39a4
Cpsf1
Gtf2a1
Kdm6b
Zfp866
Slc2a1
Wdr70
Sod1
Homer1
Trp53rkb
Arl5c
Rock2
Kctd5
S100a10
Pdf
Arntl
Ncor1
Nsd3
Letm2
Tmem230
Phf23
Pcna
Gabarap
Dvl2
Zc3h10
Tinf2
Rpl41
Nedd8
Mrpl45
Gmpr2
Idh3b
Ugdh
Gsto1
Gadd45a
Txnl1
Mbnl1
9530077C05Rik
Dynll1
Nup155
Ets2
Sub1
Vdr
Pias4
Arl14ep
Cd80
Adprh
Arih1
Slc39a10
Hipk3
Slc39a1
Crtc2
Gpx4
Ubxn1
Rabggtb
Hmgn2
Pbld2
Ifi211
Nfyc
Fgfbp3
Btaf1
Top1
Fitm2
Selenot
Txn1
Wbp4
Elf1
Ptges2
Eif2b5
Sepsecs
Sppl2a
Vegfa
Fasn
Galk2
Cops2
Sned1
Adnp2
Hdlbp
Col4a2
Eif4e2
Chrng
Slc5a3
Mrps6
Gabpb2
Zfp637
Tmem175
Plxdc1
Gak
Rab5if
Lrrc8a
Nsrp1
Gadd45b
Rpl9
Lias
Hnrnpa3
Prrc2a
Parva
Phb
Dusp2
Astl
Pigl
Msh4
Zbtb11
Rpl24
Gpr84
Aacs
Rab11b
Gstp2
Gstp1
Tent5c
Sharpin
Sf1
Maf1
Cyc1
Ddx59
Npm1
Mmadhc
Sik2
P4hb
Arhgdia
Kdm5a
Ccdc77
Ep300
Ubald1
Rmi1
Rab1a
Mgrn1
Hnrnpk
Tmpo
Rps8
Ppm1a
Rrn3
Rps3a1
Tubb4b
Slc34a3
Tut7
Ero1a
Rfx3
Pkm
Atp6v1h
Stau1
Cct8
Commd1
Cct4
Ranbp2
1700001P01Rik
Rpl17
BC031181
P4ha1
Hspa4
Ap2m1
Nol12
Lgals1
Ndfip1
Mtg1
Mrpl35
Immt
Rabl6
Ccdc183
Ccng1
Polr2m
Eci1
Ppp6c
Pnp
Sun2
Gm35339
Htra2
Dqx1
Dpy19l4
Aup1
Fam43a
Cct2
Spindoc
4930415O20Rik
Oat
Tomm34
Stk4
Cox20
Gars
Rbks
Psmd7
Clk1
Babam2
Lrif1
Rplp1
Paxip1
Tcf25
Gmfb
Cgrrf1
Brwd1
Arl8b
Arf4
Ufl1
Tle3
Plec
Angptl4
Puf60
Pafah1b1
Rps27rt
Rps27
Rab13
Jak1
Fkbp1a
Mylip
Fbxl3
Tbcd
Rab7
Aldoa
Rfc4
Tm7sf2
Hexim1
Dcp1a
Cap1
Calu
Pcdh20
Kat7
Atf1
Slc25a32
Dcaf13
Uhmk1
Tkfc
Ddb1
Slc7a5
Zcwpw2
Gzmk
Azi2
Ndufs4
Ankrd11
Nop14
Grk4
Filip1l
Ywhae
Elk4
Anln
Mrpl19
Ndufb8
Jpt1
Hif1an
Rdh14
Dusp11
Adpgk
Zglp1
Ube2j2
Pafah1b2
Arl15
Irs2
Tmem115
Flcn
Trmt44
Acox3
Cul1
Pigq
Nhlrc4
Rpl5
Srrm2
Luc7l
Fam234a
Phf2
Ctdp1
Chka
Trmo
LOC666331
Gm11634
Tmem79
Smg5
Hspa9
Secisbp2l
Pten
Fem1b
Pif1
H3f3a
Sec62
Phf20l1
Notch2
Knl1
Tsnaxip1
Saraf
Ranbp10
Rab42
Leprotl1
Tmem87b
Rab33b
S1pr4
Ncln
Tm9sf3
Ctdsp1
Crebl2
Caprin1
Prnp
Prn
Ppp1ccb
Ppp1cc
Ube2l3
Rimbp3
Cotl1
Trir
Tnpo2
Nubp1
Mrpl39
Hmgn1
Get3
Sec24a
Sar1b
Lrp6
Sox9
Rnf34
Niban2
Cnbp
Serbp1
Ift46
Arcn1
Rprd2
Ccnt1
Ube2h
H2bu2
Tada3
Arpc4
Aven
Ttc41
Hsp90b1
Lcn2
1110008P14Rik
Rnaseh2a
Lrrc59
Ube2d3
Ttyh2
Rpl38
Nrf1
Relb
Ppp2cb
Anapc5
Ing1
Cars2
Tab1
Ndufa9
Akap3
Fscn1
Pdia3
Ndufaf5
Esf1
Elovl5
Catsper2
Snx18
Usp53