ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3200440 | mESC derived haemogenic endothelium
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◣ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Ube2a
Cldn34d
Arntl
Tle3
Txndc11
Cnot1
H1f3
H3c6
H2bc8
H2ac8
H4c6
Gpr84
Ska2
Prr11
Nkx2-6
H3c10
H2bc13
H2ac13
H2bc14
Ttc41
Hsp90b1
Katnb1
Bcar1
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Gm2237
Prkaca
Sp2
H3c11
H2bc22
H2ac22
H1f5
Kmt2a
H3c8
H2ac10
H4c8
H3c7
H2bc9
Greb1
Lmna
Taf12
Gmeb1
H3c3
H2bc3
H1f2
H3c15
H3c14
H2ac19
H2ac18
Zfp869
Cry1
Ncl
H2bc6
H1f4
Calr3
1700030K09Rik
Ctnnb1
Arrdc4
Tle6
Eapp
Lima1
Nfyc
Tomm34
Stk4
Tex14
Sirt4
H2bc4
H2ac6
H4f16
H2aj
Arid4a
Rfx1
Pknox1
Pim3
Hgsnat
Ap3m2
N6amt1
Fyco1
Usp1
H2bc21
H2ac21
H2ac20
Zfp963
Tbccd1
Dnajb11
Kpnb1
Mis12
Derl2
H4c14
H3c13
H2bc18
Phb
Dcaf15
H4c4
H3c4
Gtf3c6
Shc1
Flad1
Cks1b
Lenep
Il31ra
Ttc39d
Far1
BC107364
Gm5165
H3c2
H2ac4
H4c2
H4c1
H2bc7
H2ac7
Jund
Iqcn
Dcaf11
Unk
H3f3b
Cnpy3
Baz2a
Atp5b
Gtf2a1
Fbxl3
Prdx1
Osbpl1a
Kif2c
Lats2
Pgp
Mlst8
Bricd5
Hmgb2
Tsnaxip1
Ranbp10
Srbd1
H3c1
H4c12
H2bc15
H2ac15
Klhl24
Ppia
Pnrc1
Rbm39
Gm3636
Glis2
Gm3411
Rps19
Tnpo1
Ager
Rnf5
Agpat1
Ppp2r1a
Kpna1
Tmem168
Pitpnm1
Cdk2ap2
Pradc1
Cct7
Zfp143
Rab11b
Rnpc3
Klf7
Slc39a3
Slc9a8
Fus
Zfp868
Hnrnpa1
Cbx5
Sde2
Clk1
Gm3448
Gm3417
Gm3435
Tle1
Marchf7
Cnot6
Kctd9
Cdca2
Eif1
Idh3b
Eef1a1
Slc5a5
Rpl18a
Map1s
Nepro
Lsm4
Top2b
Prxl2a
Hspa5
H4c11
Poldip3
Aven
Zfp866
Ifrd1
Ncdn
AU040320
Dera
E030030I06Rik
Clcn4
Nucks1
Olfr806
H4bc24
H2bc23
H2ac24
H2ac23
H4c17
BC005537
Cyth2
Polr2e
Fmnl3
Pabpn1
Sprr2a2
Sprr2a1
Dnajb4
Fubp1
Ywhab
Spg7
Sumo3
Tpt1
Rps3a1
Arl2bp
Sel1l
Rbm25
Zfp654
Cggbp1
Tmem94
H4c18
Arl4d
Srsf6
Srrm2
Kbtbd2
Abhd6
Snrpe
Zbtb4
Slc35g3
Polr2a
Vta1
Hjurp
A730008H23Rik
Cyld
Mcf2l
Calcoco1
Txnl1
B230219D22Rik
9430015G10Rik
Hmgn1
Pik3cb
Hmgn2
Tardbp
Dazap2
Zfp523
Akap5
Ilkap
Def8
Sdcbp
Zfp960
Zranb3
R3hdm1
Efcab2
BC028528
Nr1d2
Ciart
Slc35b2
Hsp90ab1
Alyref2
H2az2
Sod1
Per2
Gm14595
Gm14590
Ift46
Arcn1
Rbm6
Plekhb2
Fam168b
Rita1
Ddx54
Esp38
Setd5
Gbe1
Tom1
Hnrnpr
H4c3
H1f6
Ppp3cb
Ankrd1
Hsp90aa1
Tef
Eri3
Eif2ak3
Trir
Tnpo2
Get3
Mylk3
Rhob
Map2k2
Creb3l3
Srcap
Ddx39a
Cdhr4
Inka1
Uba7
Polg2
Ddx5
Cep95
Zfp623
Lsm6
Tmem107
Rps8
Hbp1
Utp4
Derpc
Chtf8
Phf7
Bap1
Rft1
Snx5
Mgme1
Tinf2
Nedd8
Gmpr2
Vpreb1
Top3b
Igll1
Etaa1
Fam76b
Cep57
Ppp1r10
Mrps18b
Atat1
Sharpin
Maf1
Cyc1
Gm35339
Armc5
9130023H24Rik
Tgfb1i1
Dglucy
Nek9
Nsmce4a
Ttf1
Cfap77
Eif4a2
Tti2
Zfp24
Ints7
Dtl
Pcif1
Rap2a
Uhmk1
Rpgrip1
Trdmt1
Hnrnpc
Zfp422
Rmi1
Hnrnpk
Zfp326
Ppp2r2a
Pcgf3
Nt5m
Cops3
Rae1
Slc16a6
Arsg
P4hb
Arhgdia
Cnbp
Ipo7
Zscan22
Nfkbil1
Ddx39b
Atp6v1g2
Vmn2r23
Tra2b
Zfp865
Zfp524
Fiz1
Cdc42
Tkfc
Ddb1
Oard1
Nfya
Mcu
Fdft1
Rplp0
Gcn1
Itgb1
Spen
Eif4e2
Chrng
Smg9
Epha7
Hnrnpa2b1
Cbx3
Mios
Mzt1
Yeats4
Epc1
Snx25
S1pr4
Ncln
Zdhhc17
Eif2ak4
Rfc1
Fbh1
Ankrd16
Elmo2
Ythdc1
Acot9
Bpnt2
Vps36
Ckap2
Smarcal1
Drc7
Srsf5
Trmo
Srek1
Rnf44
Cdhr2
Zfp658
Pole4
Kansl2
Csgalnact2
Sike1
Rp9
Bbs9
Chmp4b
Tut7
Polr2m
Nubp1
Ube2d3
Traf4
Taf15
Rpf1
Ercc6l2
Dscc1
Pcbp1
Ptpn6
Grcc10
Fam76a
Sfxn5
Gimap6
Puf60
Elk4
Gtf2ird2
Eif4b
Rcc1l
Mdm4
Dctd
Tcte3
Ermard
Eci1
Brwd1
Tm2d1
Ptbp1
Secisbp2
Cks2
Ywhae
Zfp959
Dzip3
Cip2a
Tomm20
Sertad2
Kpna4
Srd5a3
Galnt11
9030025P20Rik
Anapc10
Abce1
Ssbp4
Lrrc25
Bola1
Rgs2
Tmpo
Chd2
Thbs3
Mtx1
Bnip2
Pnpla8
Wdr78
Mier1
Ubc
Mapk1ip1l
Get4
Zfp821
Ist1
Gm29733
Cd46
H2bc1
H2ac1
Zc3h6
Rock2
Med15
Mapk6
Gip
Dedd
Aspscr1
Ets1
Srsf2
Mfsd11
Mettl23
Jmjd6
Tmem123
Tcf25
Vamp2
Luc7l2
Fbxl4
Per1
Ankzf1
Med7
Iws1
Qrich1
Qars
Zfp428
Dgcr8
Ivd
Srsf3
Atp2a2
Arrdc3
Zfp62
Rab2a
Cbfb
Cirbp
Fam174c
H1f1
LOC666331
Gm11634
Ankhd1
Adrb3
Syde1
Il17rd
Ppp2ca
4930453N24Rik
Thap11
Nutf2
Cenpt
Prpsap2
Wwc2
Mettl22
Trim27
Eif3c
Rheb
Pskh1
Nrn1l
Ghitm
Smyd1
Krcc1
Tent4b
Pts
Rab24
Prelid1
Mxd3
Rps20
Efnb2
Klf11
Rab5b
Cdk2
Cep43
Lyrm7
Hint1
Pmel
Ptdss1
Mterf3
Aak1
Gtf2a2
Slc4a7
Usp25
Hnrnpa3
Mmadhc
Kdm5a
Ccdc77
Tasor
Dpp8
Nmd3
Snrnp70
Eif4e
Pcyt1a
Cspp1
Cops5
Mxd1
Rnaseh2b
Tmem263
Mall
Fhl4
Tmem50a
Syf2
Rsrp1
Tle4
Hmgxb4
Tent2
Fam166a
Stpg3
Tubb4b
Slc34a3
Cep128
Cr1l
Smim19
Slc20a2
Spag4
Poln
Haus3
Ppp6r2
Gmnn
Nup205
Tsc22d1
Rdm1
Cox20
Cdkn2d
Cat
Taf4
Rab21
Znrf1
Luzp1
Tnrc6a
Osbp
Nfe2
Ppp1r15a
Plekha4
Aff4
Kat6a
Yrdc
1110065P20Rik
Zfand6
Car5a
Banp
Mmaa
Tmem242
Snapc4
Pmpca
Entr1
Ints9
Hmbox1
Zkscan3
Clptm1l
Tmem183a
Cox5a
Sowahc
Septin10
Fam185a
Ccdc146
Ensa
Srgap2
Fam72a
Mcl1
Smim10l1
Zfp655
Chrac1
Foxj2
Snrpd1
Esco1
Thap1
Nr2c2
Gm6712
Mtus1
Trpc1
Sqstm1
Eif5
Slc12a4
Arl6ip1
Wdhd1
Socs4
Rnf4
Zfp871
Arhgap11a
Mbtps2
Raly
Med1
Cdk12
Scaf1
Rras
Rpl17
BC031181
Tmem88
Naa38
Cyb5d1
Pkmyt1
Rabep1
Fcgr3
Ywhaz
Zfp1
Ncor1
Pigl
Arf4
Zfp691
Zfp341
Pxmp4
Haus4
Tgfbr3l
Vdac2
Fbxw11
Snapc2
Ctxn1
Tbl1xr1
Akap10
Ncoa4
Dnaja1
Dnajb1
Nup62
Il4i1b
Atf5
Zc3h11a
Zbed6
Rpsa
Snw1
Opa3
Pdcd6ip
Fam204a
Smchd1
Sephs2
Dcun1d4
Dusp1
Abca3
Abca17
Ulk2
Odc1
Gabpb2
Psmd7
Hps5
Gtf2h1
Myo1g
Zfp605
Plcxd1
Gtpbp6
Tomm70a
Zfp628
Nat14
Gm36210
Mtpap
Cox8a
Pum1
Cfl2
Nyx
Cfap45
Itga2b
Stag2
Nip7
Cog8
Pdf
Tspyl2
Eif4a3
Card14
Atxn7
Top2a
Actl6a
Serinc3
Mtf2
Ubr5
Wdr83os
Wdr83
Gm5741
Dhps
Rfesd
Prdm10
Gm7244
Zdhhc16
Exosc1
Hpf1
Ppm1a
Sdhaf2
Cpsf7
H6pd
Atad1
Ubxn4
Pex2
Gm3383
Stk3
Ppp3ca
Ahctf1
Oxsm
Ngly1
Smarca5
Paip2
Wdr4
Ndufv3
Trp53inp2
Fbxo34
Slc35a3
Zfp445
Foxk2
Sbf2
Hic2
Pcm1
Yy1
Qtrt2
Ccdc191
Pibf1
Dis3
Ticrr
Ddx3x
Atf1
Bola3
Dync1li2
Txnrd1
Eid3
Dync1li1
Gm33989
Hp1bp3
Sf3a2
Plekhj1
Amh
Tex261
Igf2bp3
Shroom3
Pfkfb3
Bmpr1a
Kntc1
Ddx59
Luc7l
Fam234a
Thap3
Phf13
Tkt
Mettl1
Eef1akmt3
Cyp27b1
Cd300lb
Ubb
H3f3a
Med17
Hnrnpm
Ube2d2a
Dnajc10
Casc3
Tcerg1
Rnf38
Kcnu1
Ash2l
Txndc5
Ung
Alkbh2
Gemin4
Dbil5
Ufsp2
1700029J07Rik
Zfp882
Dnajb12
Krr1
Irf2bpl
Zfp384
Atf7
Zbed3
Lyl1
Kmt5a
Swsap1
Sun1
Epor
Larp4
Zfp637
Rpl13
Trpc4ap
Sugp1
Mau2
Brd4
Rpl36
Micos13
Topbp1
Gps2
Eif5a
Vamp3
Sesn1
Hagh
Fahd1
Zranb2
Psmd4
Msh6
Cic
Tdrkh
Nfkbiz
Znfx1
Ddx17
Crk
Eif3e
Kpna2
Elk1
Selenof
Hs2st1
Ndfip2
Atg14
2610008E11Rik
Srpx2
Evi5l
Mat2a
Txnip
Hnrnpab
Urgcp
Slc39a10
Rbm7
Gm5617
Cavin1
Hsd17b12
Impact
Strn3
Ap4s1
Pdcd4
Cisd2
Usp35
Kctd21
Pacs2
Pih1d2
Nkapd1
Spata17
Gpatch2
Fnbp1l
Mrps9
E2f8
Tiparp
Rfx3
Tmem248
Psma3
Mphosph9
2810006K23Rik
Exoc5
Ap5m1
Sfr1
Tspo
Mcat
Rbfox2
Fkbp3
Fancm
Mrpl55
2310033P09Rik
Mageb3
Ctdspl2
Zfp433
Gm32687
Rhbdd2
Prpf40b
Fam186b
Chmp3
Exosc10
Hnrnph1
Gsto1
Txn1
Gmfb
Cgrrf1
Csde1
Psmd3
Kansl1
Sav1
Usp40
Snrnp35
Rilpl2
Stil
Gm10033
Rpl10a
Klf9
Psmd12
Pitpnc1
Pak2
Kbtbd7
Ebag9
Pcnt
2610028H24Rik
Cnih1
Rps15a
Myof
Hmbs
H2ax
Dpagt1
Eif4a1
Cd68
Frmd6
Etf1
Ppp2r3a
Marchf5
Cpeb3
Usp34
Mapkapk5
Rps24
Polr3a
Cyrib
Ccdc50
Erbin
Patz1
Zfp553
Ing3
Cyfip1
Hyls1
Mcpt8
Litaf
Kmt2e
Ccdc88a
St3gal2
Lims1
Nfil3
Ythdf3
Rpl8
Commd5
Sphk2
Spaca4
Rpl18
Fam83e
Ino80
M6pr
Sumo2
Sp4
Caap1
Paip1
Vrk2
Axl