ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9144815 | 3T3-L1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◣ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Zbtb4
Slc35g3
Polr2a
Eif1
Cxcl1
Klf7
Mt1
Mt2
Zyx
Dusp5
Jund
Iqcn
Polg2
Ddx5
Cep95
Errfi1
Hnrnpa2b1
Cbx3
Mat2a
Hspa8
Raly
Rps19bp1
Atf4
Nfkbiz
Zfand5
Dusp1
Tex14
Cwc22
Unk
H3f3b
Cebpd
Actg1
Vcl
Fos
Tob1
Tuba1c
Fth1
Id3
Dstn
Prdx2
Junb
Rnaseh2a
Ppia
Dnajb1
Tpt1
Sdc4
Eif4a2
Ier3
Flot1
Ttc39d
Fam53c
Cdc25c
Ppp1r10
Mrps18b
Atat1
Egr1
Slc35e3
Sik1
Ubb
Flna
Emd
Nfkbia
Adamts1
Coq10b
Ftl1
Bax
Id1
Arf6
Ptp4a1
Vim
H2-DMa
Brd2
Cdkn1a
Palld
Mdm2
Btg1
Cirbp
Fam174c
Ier2
Tsc22d1
Cebpb
Sqstm1
Dnaja1
Cfl1
H4c3
H1f6
Top1
Eef1a1
Thbs1
Zfp36l2
Oat
H3c15
H3c14
H2ac19
H2ac18
Ctnnb1
Hspa5
Rgs2
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
Ywhaz
Btg2
Serpine1
Litaf
Crem
Zfp36
Plekhg2
Ets2
Mcl1
Rplp0
Gcn1
Egr2
Myl12a
Actb
Fbxl18
Slc25a4
Ubc
Pdlim5
Rnf19b
H4f16
H2aj
Timp2
Tiparp
Tmem123
Clec2d
Rabgef1
Ifrd1
Fus
Fosb
Itgb1
Ddit4
Lmna
Itga5
Cited2
Ddx3x
1810013L24Rik
Serinc3
Tmem167b
Stat3
Acta2
Csrnp2
LOC547349
H2-L
H2-D1
Rap1b
Atp2a2
Nabp1
Srsf5
Ppp1r12a
Wsb1
Ulk2
Arl4d
B2m
Hif1a
Phlda3
Hsp90aa1
Rhob
Rnf34
Mknk2
BC005537
H2bc6
H3c11
H2bc22
H2ac22
H1f5
H1f4
Hnrnpab
Cpeb2
Ccnl1
Ugdh
Pnrc1
Tpm1
Zfp36l1
Ccn1
Sgk1
Eif4a1
Cd68
Senp3
Plk2
Rps29
Lrr1
Rnft1
Pdlim7
Egr3
Selenop
Usp4
Gpx1
Hipk3
Gnas
Ccl7
Col4a2
Pim3
Ccl2
Arih1
Dnajb4
Nr4a1
Srsf3
Wdr81
Tlcd2
Tra2a
Ppp1r2
Tubb6
Jun
Actr3
Zswim6
Odc1
Fstl1
Homer1
H4c14
H3c13
H2bc18
Taf13
Hnrnpu
Amn1
Filip1l
Ell2
Srsf2
Mfsd11
Mettl23
Jmjd6
Srsf6
Kmt2e
Larp4
Slc35b2
Hsp90ab1
Slc25a3
Klf6
Eapp
Slc2a1
Fermt2
Tmem175
Gak
H3f3a
Nemf
Myh9
Pcif1
Gadd45g
Vdr
Hmbs
H2ax
Dpagt1
Prdx1
Tmsb4x
Tra2b
Ndel1
Gls
Col1a1
Piezo1
Ldha
Map3k6
Pakap
Rbm39
Dynll1
Gstp2
Gstp1
Bach1
Setd5
Rbm3
Gem
Sptan1
Gpat4
Ints6
Pabpc1
Rheb
Cdr2l
Slc38a2
Irf1
Ube2h
Pkd1
H2-K1
Tpm4
Fubp1
Herpud1
Plec
Aplp2
Creb1
Socs3
Parva
Spindoc
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Ptgs2
Ppp1r15a
Plekha4
Rock2
Baiap2
Syngr1
Rpl3
H3c10
H2bc13
H2ac13
H2bc14
Taf4
Poldip3
Sod1
Gpx4
Gadd45b
Phlda1
Slc3a2
Pif1
Plekho2
Rab5if
Sp1
Ppard
Tmem129
Tacc3
Slbp
Fscn1
Tuba1b
Lag3
Ptms
Slc5a3
Mrps6
Calm2
Gtf2b
Zbed5
Chchd2
Cdc42
Med1
Cdk12
Map7d1
Trappc3
Igfbp7
Ccng1
Rab7
Zfp869
Calm1
Sirt4
Hnrnph1
Rcc1
Myl6b
Myl6
Gsto1
H4c4
H3c4
H2bc7
H2ac7
Mbd6
Ddit3
Jak1
Cd248
Fkbp5
Kntc1
Tmem50a
Syf2
Rsrp1
Niban2
Csrnp1
Lima1
Sat1
H2bc8
H2ac8
Fgfbp3
Btaf1
Id2
Elovl5
H1f3
H3c6
Efcab2
Map2k4
Atf3
Hmox1
Nup62
Il4i1b
Atf5
Arrdc2
Cstf3
Zfp143
Gapdh
Lbh
Aff1
Irs2
Kdm6b
Zfp644
Teddm1a
Glul
Tada3
Arpc4
Lrrc8a
Taf12
Gmeb1
Ctsl
Lin37
Hspb6
U2af1l4
Psenen
Slc6a8
Proser3
Eef2
Dapk3
Rad23a
Calr
Pias4
Fasn
Fn1
Sf3b1
Arf4
Cbx4
Vasn
Csf1
Cds2
Tmem230
Pcna
Prrc2a
Aff4
Sub1
Hspa4
Csnk1a1
Tmsb10
Tmed5
Ccdc18
Pcf11
Bcl10
Txnip
Tmem107
Rps20
Sox9
Serpina3g
Hmgcr
Ube3b
Kctd10
Chka
Irf2bp2
Ncl
Slc18b1
Rps12
Mob3a
Izumo4
Hexim1
Uap1
Scaf1
Rras
Hdlbp
Calu
Ppp2cb
Hnrnpdl
Enoph1
Peli1
Rybp
Ing1
Cars2
Rrbp1
H3c3
H2bc3
H1f2
Ankrd11
Mapkapk2
Ptpn2
Med13
Tsc22d3
H3c8
H2ac10
H4c8
Nol12
Lgals1
Pitpna
Zfp1
Hnrnpll
Slc9a1
Ier5l
Etf1
Chd4
Nfat5
Sde2
Klf2
Ywhag
Opa3
Malsu1
Fosl2
Esyt2
H3c2
H2ac4
H4c2
H4c1
H3c1
H1f1
Cltc
Relb
Caprin2
Tctex1d4
Btbd19
Plk3
Wdr1
Eif5
Slc7a5
Insig1
Tnp2
Socs1
Prm3
Prm2
Tomm34
Stk4
Prkar1a
Golph3
Nt5c2
Gas1
Trp53inp2
Nedd9
Rhoj
Jpt1
Rpl19
Cacnb1
B3gnt2
Ccnyl1
Trib1
Dgat1
Ier5
Ubald1
Mgrn1
Ppm1a
Srf
Cul9
Eif4g2
Cul1
Ube2d2a
Znrf1
Txndc11
Zfp963
Nfkb2
Efnb2
Tmem259
Cnn2
Abca7
Cald1
Midn
Map1lc3a
Atp5d
S100a10
Ifi211
Eif4g1
Rnd3
Ero1a
Nptn
Cap1
Smad1
Usp38
Apbb2
Tuba1a
Mylip
Gmeb2
Rgl1
Arpc5
Lgr4
Klhl21
Znfx1
Rpl22l1
Dcbld2
Hnrnpa0
Dot1l
Wnk1
Oaz1
Eprs
Pafah1b2
Sik3
Sik2
Smim14
Rpl10a
Sned1
Slc25a11
Rnf167
Pfn1
Eno3
Spry2
Med14
Epc1
Pafah1b1
Ube2j1
Paxip1
Phc2
Birc3
Msrb3
Bzw1
Nrip1
Mbnl1
Id4
Ifnar1
Zfp655
Slc16a1
Azin1
Hnrnpa1
Cbx5
Sf1
Dlgap4
Glrx
Tgfbr3
Nrbf2
Retsat
Elmod3
G3bp1
Atox1
Nfe2l1
Wbp11
Smco3
BC049715
Ctnnd1
Btbd18
Jdp2
Clic4
Hnrnpa3
Clk1
Ucp2
Zmat1
Shld2
Glud1
Vegfa
Slc39a10
Hexim2
Wbp4
Elf1
Idh3b
Cct2
Ranbp2
Tmem87b
Kpna4
Ppp2ca
Tnfrsf1b
Eif3c
Pdss2
Snx5
Mgme1
Mafk
Slc25a25
Nfe2l2
Vamp2
Rpl10
Ubn1
Glyr1
Psma3
Rasa3
Kdm7a
Ube2v2
Slc25a5
Atp6v0c
Amdhd2
Zc3h12a
Ifitm5
Pgghg
Nufip2
Rab42
Rfx3
Son
Gm36712
Gart
Lims1
Klf9
Slc25a33
Rpgrip1
Hnrnpc
Cacna2d1
Morc2a
Zfc3h1
Thap2
Pdrg1
Ptpn12
Gadd45a
Fndc3b
Cul3
Dgat2
Tob2
Adnp2
Prnp
Prn
Ccdc85b
Fosl1
Fibp
Gtf2a1
Noct
Rnf10
Coq5
Rbks
Babam2
Ube2s
Rhou
Ubr5
Txn1
Pskh1
Nrn1l
Maff
Coro1c
Rsu1
Marcksl1
Arl15
Serbp1
Pdia3
Catsper2
Bcl7b
Ptges2
Rpl9
Lias
Aacs
Lcn2
1110008P14Rik
Fgfr1
Psme4
Ext1
Zbtb37
Slc12a4
Nsun6
Arl5b
Tpp2
Lpp
Tax1bp1
Ptma
Rasl11a
Smim10l1
Trmt10c
Pcnp
Serp1
Eif2a
Twist2
Arpc2
Klf4
Pnp
Cd164
Smarca5
Srrm2
Serpinh1
Mapk1
Zer1
Tbc1d13
Sra1
Slc35a4
Apbb3
H2bc4
H2ac6
Resf1
Tcf25
Ttpal
Cldn34d
Dhx9
D5Ertd579e
Mphosph9
2810006K23Rik
Zrsr2
Slc1a5
H2bc21
H2ac21
H2ac20
Map2k2
Creb3l3
Rab43
Tnrc6c
Selenot
Ndfip1
Nrbp1
Slc10a7
Rbmxl1
Secisbp2l
Sbf2
Tti2
Txnl1
Cnbp
Pole4
Zc3h10
Rpl41
Sart3
Iscu
Foxj2
Pxn
Trim39
Pitrm1
Dnaja2
Bcar1
Cpeb4
Lamp2
Rnf214
Pcsk7
Aldoa
Rraga
Ppp4c
Tpst1
Tmem165
Trp53inp1
Fbxo30
Inpp5a
Bcl2l13
Pik3r1
Yeats4
Zbtb11
Rpl24
Rbbp7
Ppp1ccb
Ppp1cc
Dock9
Rab21
Shc1
Flad1
Cks1b
Kmt5b
Dipk2a
Acly
Nfkbil1
Ddx39b
Atp6v1g2
Zc3h15
Zfp868
P4hb
Arhgdia
Rcn2
Nxf1
Ddx59
Rbm12
Cpne1
Brd1
Atp1b3
Zswim4
Ankrd17
Snu13
Frs2
Tyw1
Sbds
Gclc
Fam166a
Stpg3
Tubb4b
Slc34a3
Ndufaf3
Impdh2
Dalrd3
Ubap2l
4933434E20Rik
Lrif1
Cpsf6
Wdfy1
Tagln2
Srsf1
Twf1
Arl2bp
Bag3
Slc39a14
Metrnl
Simc1
Kif2c
Rplp1
Cox5a
Skp1
Taf10
Rrp8
Ilk
Tacc1
Ahnak
Nfil3
Snapc1
Vamp3
Glipr2
Sertad1
Arl5c
Plxdc1
Plpp3
Pim1
Sipa1l2
Pcbp1
Srxn1
Sesn2
Ahctf1
Rbm14
Gm21992
Taok1
Zfp236
Mlxip
Stk40
Lsm10
Acap2
Sp3
Rrn3
Pdha1
Bag2
P4ha1
Hnrnpm
Prpsap2
Mrpl45
Csgalnact2
Amd2
Amd1
Tardbp
Mideas
Dynll2
Cyth2
Fam53a
Osmr
Actn4
Napa
Gm3448
Gm3417
Tcte3
Ermard
Ep300
Vdac2
Grasp
Armc12
Uspl1
Irf2bpl
Atp13a3
Traf7
Rab26
Phf2
Rbbp6
Nsd3
Letm2
Phf20l1
Rnf114
Myc
Ptpn11
Ddx50
Kansl1l
Zfp281
Wdr26
Alas1
Tax1bp3
Emc6
Frmd6
Cry2
Lox
Selenok
Actr8
Por
1700001P01Rik
Rpl23
Rnf19a
Pja2
Rela
Myo1e
Trir
Tnpo2
Get3
Sod2
Itprip
Nagk
Snai1
Rab11b
Nckap5l
Spata45
Flvcr1
Tut7
Elk4
Nr4a2
Gcat
H1f0
Stau1
Msx1
Sugct
Mplkip
Cdkn2aip
Tm2d2
Adam9
Dpep1
Mthfd2
Mob1a
Cct8
Ddx19b
Aars
Etnk1
Foxk1
Higd1a
Map3k14
Mlf2
Wls
Prmt5
Styxl1
Mdh2
Herc2
Enah
Ubxn6
Hdgfl2
Large1
Birc6
Mnt
Pgap2
Nup98
Ndufs1
Eef1b2
Ric1
Atl2
Drap1
AI837181
Ercc5
H4c17
Rpl3l
Rps2
Rnf151
Ndufb10
Eif4ebp3
Ube2a
Plag1
Chchd7
Sclt1
D3Ertd751e
Nt5dc3
C330007P06Rik
Rps27rt
Rps27
Rab13
Surf6
Rpl7a