ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620288 | NIH/3T3
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◣ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Sspn
Txndc11
Aldh9a1
Pgk1
Il31ra
Hexb
Kpna1
Greb1
Dnah7b
Cerk
Rsph3b
Col6a6
Nkx2-6
Gm10710
Dchs2
Zfp945
Rsph3a
Ccn1
Errfi1
Ifrd1
Egr1
Serpine1
Osbpl1a
Flnc
Ier2
Cd209a
Actg1
Olfr1274
Thbs1
Actb
Nr4a1
Dusp1
Abca3
Abca17
Dusp5
Ptgs2
Tmem125
Abhd6
Ubc
Vim
Prdx2
Junb
Cldn34d
Olfr806
Mt1
Mt2
Gm525
Tpm1
Fos
Zfp791
Dnajb1
Sgk1
Mbd6
Ddit3
Ccn2
Hspa5
Homer1
E030030I06Rik
Btg2
Atp5g1
Gadd45g
Pknox1
Zyx
Pramel32
Ifna13
Id3
Rps19bp1
Atf4
Cox8c
Hspa8
Ugdh
Ttc4
Syn2
Csf1
Jun
Zfp598
Npw
Dcaf5
Gm13285
Gm13290
Gm13289
Gm13287
Gm13279
Gm13278
Gm13275
Gm13288
Insig1
Tmem18
Wwox
Gm13277
Btg1
Vcl
Ier3
Flot1
Vmn2r4
Setd4
Cbr1
Fn1
Tulp4
Arc
Celf2
Arl4d
Timp2
Ifnz
Gm13272
Mat2a
Egr3
Prickle1
Tle1
Hmox1
Gtf2i
Zfand5
Gm13276
Trim50
Fkbp6
BC005537
Calm1
Pdlim5
Rubcn
Fyttd1
Ier5
Cbr3
Plk2
Dnaja1
Sf3a3
Mcl1
Ccl7
LOC666331
Gm11634
Aadacl2fm1
Csf2ra
Palld
Myh9
Med23
Tmsb4x
Slc2a1
Rdm1
Jund
Iqcn
Nol12
Lgals1
Nemf
Itga5
Tab1
Tex14
Tob1
Map7d1
Trappc3
Gm3448
Gm3417
Gm3435
Utp14b
Acsl3
Prdx1
Ap1g1
Aaas
Noct
Cav1
Tob2
Smad1
Fyco1
Lyrm2
Mtf2
Polg2
Ddx5
Cep95
Sdc4
Tcte3
Ermard
Oasl1
Hmgcr
Nme1
Mia2
Sqle
Unk
H3f3b
F3
Trib1
Cdkn2aipnl
Srxn1
Prkce
Cltc
9030025P20Rik
Arl8b
H3c3
H2bc3
H3c2
H2ac4
H4c2
H4c1
H3c1
Gm13286
Gm13283
Gm13271
Phlda1
Bod1l
Rps29
Lrr1
Myl12a
Mrpl20
Ccnl2
Gtf3c3
Mrps2
1700007K13Rik
Olfr938
Kdm2a
Zfp36
Plekhg2
Yap1
1810013L24Rik
Lmna
Blmh
Smo
Fth1
Hexim2
Speer4f1
Nipbl
Rasl2-9
Ctnnb1
Atp2a2
S100a3
S100a2
Rpl10a
Ankrd40
Ftl1
Bax
Id1
Zswim6
Oxct1
Rel
Traf6
Cdc42ep3
Cobll1
Tiparp
Fem1b
Tapbp
Rgl2
Gramd4
Lrp12
Nfat5
Fosb
Arl14ep
Notch2
Ppia
Lrp6
Nrf1
Utp3
Lbh
Fbxo7
Bpifc
2200002J24Rik
Sox9
Rcn2
Ppp1r15a
Plekha4
Ifi211
H3c11
H2bc22
H2ac22
H1f5
Actr3
H1f3
H3c6
H2bc8
H2ac8
Frg2f1
Foxj3
Them4
Rtn4
Zfp36l2
Tpt1
Dnajb4
Fubp1
Rpl22l1
Ctnnd1
Btbd18
Drg1
Acap2
Eml4
Dnajc24
Tox4
Rab2b
Csrp2
Eef1a1
Hnrnph3
Pbld2
Azin1
Uspl1
Tcea1
Ccl2
Cul1
Lsm11
Idi1
Tnfrsf12a
Thoc6
Hcfc1r1
Cldn6
Cldn9
H2-DMa
Brd2
Lox
Htra2
Dqx1
Aup1
Snx18
Camk2d
Cldn12
Sesn1
Kansl3
Fer1l5
H3c15
H3c14
H2ac19
H2ac18
Mideas
Chac1
Mrps33
Glis1
Surf6
Rpl7a
Med22
Nipsnap2
Mrps17
Cpd
Raf1
Ncbp2
0610012G03Rik
S100a6
S100a5
S100a4
Ptbp1
Cavin1
Qser1
Guca2b
H2bc6
H4c4
H3c4
H2bc7
H2ac7
Sfi1
Eif4enif1
Baiap2
Actn4
Vamp4
Septin9
Zbtb4
Slc35g3
Polr2a
Opa1
Rnft1
Ccnl1
Pds5b
N4bp2l2
Ppp2cb
Cdkn1a
Ankrd1
Poldip3
Nabp1
Mterf1a
Ccdc88a
Rpl27
Ifi35
Hbegf
Hrob
4931408C20Rik
Kif21b
H4c3
H1f6
Fasn
Cipc
Tbp
Psmb1
Ulk2
Tmem107
Borcs6
Dgat1
Pten
Ier5l
Gpatch8
Uvssa
Cacybp
Rap2b
Tnfaip6
Tab2
Atp6v1h
Txnrd1
Eid3
Tlcd1
Rpl23a
Rab34
Proca1
Rps20
Aacs
Mrps31
Rnf11
Ubxn2a
Atad2b
Naa16
Mtrf1
Dlx2
Srsf1
Hnrnph1
Timp1
Ndufs7
H2bc21
H2ac21
H2ac20
Pdia3
Catsper2
Med7
Sec22b
Sh3glb1
Eif4a2
Ube2z
Mapkbp1
Agk
Stx18
Slc25a3
H3c8
H4c6
Cebpb
H3c7
H2bc9
Galk2
Cops2
Plag1
Chchd7
Bhlhe40
Fam133b
Hnrnpu
Ephb3
Slc39a13
Lrig2
Medag
Ttc39b
Cbwd1
Hrh2
Syngr1
Rpl3
Ddit4
Hgsnat
Wdr70
Mterf1b
Nup155
H2-DMb2
Faf1
Cdkn2c
Wdr25
Wars
Cyp51
Sgcd
Rhob
Pcbp2
Fus
Creb1
Tef
Ythdf2
Ddhd2
Sptan1
Cfl1
Apc2
Rps15
Ubb
Eci1
Slc25a32
Dcaf13
Rhoq
Uhrf1bp1l
Pex2
Ubtf
Pabpc4
Esyt2
Wdr81
Tlcd2
H4f16
H2aj
Fbxw4
H4bc24
H2bc23
H2ac24
H2ac23
H4c14
H3c13
H2bc18
H4c18
Cxcl1
Eif1
Cwc22
H1f2
Klf7
Hnrnpa2b1
Cbx3
Eapp
Ube2a
H1f4
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Ttc39d
Ppp1r10
Mrps18b
Atat1
H4c17
Arf6
Nfkbia
Tsc22d1
H2ac10
H4c8
Kif2c
Taf12
Gmeb1
Slc35e3
Zfp143
Mdm2
Acacb
Fam53c
Cdc25c
Raly
Gtf3c6
Sp1
Cited2
Tecpr1
Fam227b
Dtwd1
Srsf2
Mfsd11
Adamts1
H3c10
H2bc13
H2ac13
Fbxl18
Zfp949
Mettl23
Jmjd6
Tmem267
H2bc14
Zfp36l1
Slc38a2
Rplp0
Gcn1
Cirbp
Cebpd
Sirt4
Sqstm1
Cdh12
Herpud1
Nfkbiz
Fam174c
Slc14a2
Pnrc1
Txnip
Ppp1r12a
Lima1
Sympk
H1f1
Clcn4
Olfr855
Olfr854
Znfx1
Pcif1
Scrib
Tuba1c
Clec2d
Pald1
Calcoco1
Yeats4
Srsf5
Tmem167b
Odc1
Ptp4a1
Efcab2
Hsp90aa1
Tuba1a
Sik1
Eef2
Dapk3
Rbm39
Hmbs
H2ax
Dpagt1
Srsf6
Rgs2
Srsf3
Slc35b2
Litaf
H2bc4
H2ac6
Pcbp1
Ddx3x
Slc25a4
LOC547349
Hsp90ab1
Tuba1b
Slc3a2
Vmn2r102
Ywhaz
H4c11
Ints6
Serinc3
Tti2
B2m
Epc1
Cdc42
Nup62
Il4i1b
Atf5
Tmem123
Car5a
Banp
Ddx23
Usp4
Gpx1
Klf6
Zfp869
Rptor
Zfp513
Snx17
Eif2b4
Tra2a
Hnrnpab
Rcc1
Eif5
Calm2
Gtf2b
Kmt2e
Taf4
Zfp207
5730455P16Rik
H2-L
H2-D1
Col1a1
9430015G10Rik
Setd5
Eif4a1
Cd68
Itgb1
Cnot1
Dync1i2
Mrpl44
Med1
Cdk12
H4c12
H2bc15
H2ac15
Rap1b
Selenop
Dstn
Stat3
Pabpc1
Larp4
Ncl
Amn1
Kntc1
Flna
Emd
Phlda3
Zfp963
Ppbp
Pole4
Zc3h6
Napepld
Sde2
Tmem50a
Syf2
Rsrp1
Phf12
Shc1
Hmgb2
Smim10l1
Tmed2
Rilpl1
Zfp1
Lag3
Gapdh
Xcr1
Scaf1
Rras
Nfe2l2
Hif1a
Rnf10
Coq5
Chmp4b
Resf1
Crem
Urgcp
Pus1
Ep400
Retsat
Elmod3
Rad23a
Trib3
Mknk2
Gcat
Coq10b
Zfp655
G3bp1
Atox1
Tmem129
Tacc3
Slbp
Ptms
Wsb1
Slc18b1
Irf1
Pkd1
Prcc
Pim3
Zfp868
Cxcl5
Atp6v0c
Amdhd2
Tmsb10
Senp3
Nfkbil1
Ddx39b
Atp6v1g2
Gem
Wnk1
H1f0
Calr
Rps12
Kmt5b
Gls
Trmt10c
Pcnp
Ppp1r2
Eif3a
Eif3c
Zbtb37
Socs3
Pdss2
Tra2b
Klf2
Uqcc3
Pdlim7
Taf13
Matr3
Teddm1a
Glul
Slc9a1
Fstl1
Tctex1d4
Btbd19
Adnp
Nufip2
Rheb
Nip7
Cog8
Son
Gm36712
Gart
Ctsl
Pprc1
Ppig
Gm14595
Gm14590
Arrdc2
Rabgef1
Spen
Piezo1
Rnf19b
Fam166a
Snx5
Mgme1
Eif4g2
Egr2
Mettl25
Ccdc59
Ldha
Stpg3
Usp48
Map2k2
Creb3l3
Ywhag
Tmem168
Csrnp2
Aff4
Bach1
Ptpn2
Zbed5
Chchd2
Map1lc3b
Sec61a1
Flad1
Cks1b
Hnrnpa1
Cbx5
Birc2
Csnk1a1
H2-K1
Ptpn6
Grcc10
Morf4l1
Sp3
Ndel1
Mthfd2
Mob1a
Copz1
Ptma
Cds2
Cpeb2
Chrac1
Chmp6
Slc39a4
Cpsf1
Gtf2a1
Kdm6b
Zfp866
Sod1
Trp53rkb
Arl5c
Rock2
Kctd5
S100a10
Pdf
Arntl
Ncor1
Nsd3
Letm2
Tmem230
Phf23
Pcna
Gabarap
Dvl2
Zc3h10
Tinf2
Rpl41
Nedd8
Mrpl45
Gmpr2
Idh3b
Gsto1
Gadd45a
Txnl1
Mbnl1
9530077C05Rik
Dynll1
Ets2
Sub1
Vdr
Pias4
Cd80
Adprh
Arih1
Ahnak
Slc39a10
Hipk3
Slc39a1
Crtc2
Gpx4
Ubxn1
Rabggtb
Hmgn2
Nfyc
Fgfbp3
Btaf1
Top1
Fitm2
Selenot
Sf3b1
Txn1
Wbp4
Elf1
Ptges2
Eif2b5
Acta2
Sepsecs
Sppl2a
Vegfa
Sned1
Adnp2
Hdlbp
Col4a2
Eif4e2
Chrng
Slc5a3
Mrps6
Gabpb2
Zfp637
Tmem175
Plxdc1
Gak
Rab5if
Lrrc8a
Nsrp1
Gadd45b
Rpl9
Lias
Hnrnpa3
Prrc2a
Parva
Phb
Dusp2
Astl
Pigl
Msh4
Zbtb11
Rpl24
Gpr84
Rab11b
Gstp2
Gstp1
Tent5c
Sharpin
Sf1
Maf1
Cyc1
Ddx59
Npm1
Mmadhc
Sik2
P4hb
Arhgdia
Kdm5a
Ccdc77
Ep300
Ubald1
Rmi1
Rab1a
Mgrn1
Hnrnpk
Tmpo
Rps8
Ppm1a
Rrn3
Rps3a1
Tubb4b
Slc34a3
Tut7
Ero1a
Rfx3
Pkm
Kansl2
Stau1
Cct8
Commd1
Cct4
Ranbp2
1700001P01Rik
Rpl17
BC031181
P4ha1
Hspa4
Ap2m1
Ndfip1
Mtg1
Mrpl35
Immt
Rabl6
Ccdc183
Ccng1
Polr2m
Ppp6c
Pnp
Sun2
Gm35339
Dpy19l4
Fam43a
Cct2
Spindoc
4930415O20Rik
Oat
Frmd6
Fosl2
Tomm34
Stk4
Cox20
Gars
Rbks
Psmd7
Clk1
Babam2
Lrif1
Rplp1
Paxip1
Tcf25
Gmfb
Cgrrf1
Brwd1
Arf4
Ufl1
Tle3
Plec
Angptl4
Puf60
Pafah1b1
Rps27rt
Rps27
Rab13
Jak1
Fkbp1a
Mylip
Fbxl3
Tbcd
Rab7
Aldoa
Rfc4
Tm7sf2