ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9144814 | 3T3-L1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◣ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Zbtb4
Slc35g3
Polr2a
H4f16
H2aj
Cxcl1
Unk
H3f3b
Cwc22
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
H3c15
H3c14
H2ac19
H2ac18
H4c3
H1f6
Slc35e3
Yeats4
H3c3
H2bc3
H1f2
H4c14
H3c13
H2bc18
Tob1
Eif1
H4c17
Ftl1
Bax
H2bc6
H4c4
H3c4
H2bc7
H2ac7
Eif4a2
Ppbp
Cxcl5
Tuba1a
Mt1
Mt2
Tsc22d1
Arf6
Nfkbia
Sp1
Kmt5b
H3c8
H2ac10
H4c8
Hmgb2
H1f4
H1f3
H3c6
H4c6
Sned1
Pnrc1
Angptl4
Mat2a
Adamts1
Clec2d
Txnip
Smim10l1
Nup62
Il4i1b
Atf5
Col1a1
Rps19bp1
Atf4
Zfp36l1
Zfp36l2
Sqstm1
Mdm2
Fam43a
Fth1
B2m
Uspl1
Slc5a3
Mrps6
Arrdc2
Ttc39d
Ints6
Jund
Iqcn
H3c11
H2bc22
H2ac22
H1f5
Tuba1b
Hmgn2
Ppp1r10
Mrps18b
Atat1
Cebpd
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Efcab2
Mmp2
Nsd3
Letm2
Pcbp1
Ddit4
H2bc21
H2ac21
H2ac20
Klf7
Eef1a1
Prdx2
Junb
Poldip3
Ubc
Gm3448
Gm3417
Tcte3
Ermard
Slc25a4
Selenop
Resf1
Srsf3
Ulk2
Brpf3
Cited2
Lag3
Ptms
Ppp1r12a
Tex14
Vim
Btg1
Irf1
Hnrnpu
Son
Gm36712
Gart
Actb
Klhl24
Slc39a10
H2bc8
H2ac8
Pnp
Cebpb
Epc1
Napepld
Polg2
Ddx5
Cep95
Syngr1
Rpl3
Taf4
Gcat
H1f0
Cdkn1a
Ddah2
Clic1
Mpig6b
Ly6g6c
Rrp36
Mea1
Klhdc3
Uhmk1
Nip7
Cog8
Pdf
Tmsb10
Ppia
Med1
Cdk12
Hexim2
Sec62
Ddx3x
Ccng2
H3c2
H2ac4
H4c2
H4c1
H3c1
H1f1
Slc38a2
Csrnp2
Gm13285
Gm13290
Gm13289
Ifnz
Gm13272
Srsf6
Pcif1
Rap1b
Cox20
Urgcp
Wsb1
Sp3
Zfp1
Dip2b
Fbxl3
Phlda3
Ctnnb1
Nde1
Marf1
Fus
Sik1
Spen
Prdx1
Col1a2
Nrf1
Ubb
Fam53c
Cdc25c
Calm1
Hnrnph1
Zfp866
Rnf103
Zfp963
Zfp655
Dennd6a
Hnrnpa2b1
Cbx3
Tmem223
Tmem179b
Eif4g2
Odc1
Serinc3
Timp2
Gfpt1
Cpsf6
Rhou
Nfat5
9530077C05Rik
Anln
Atp6v0c
Amdhd2
Hmgn1
Recql4
Lrrc14
Lrrc24
C030006K11Rik
Amacr
Gadd45a
Rad23a
Sun2
Gadd45gip1
Dand5
Zfp207
5730455P16Rik
Ctdsp1
Eif3a
Dynll1
Gm13287
Gm13279
Gm13278
Gm13275
Gm13288
Gadd45b
Cplane1
Ccl7
Ankrd37
Zfp771
Dctpp1
Ddx17
Slc5a6
Cad
Atraid
Hmbs
H2ax
Dpagt1
Mylip
Phf2
Slc43a2
Hsp90aa1
Kntc1
Rfc4
Ssbp4
Lrrc25
Bach1
Sdc4
Hexim1
Gpr19
Kif2c
Mthfd2
Mob1a
Ier5l
Srsf2
Mfsd11
Mettl23
Jmjd6
Pdss2
Atp5g3
Frs2
Mmadhc
Atg10
Raly
Calm2
Nfyc
Tapbp
Rgl2
Ep300
Zfp41
Hif1a
Arl5c
Ahnak
Plxdc1
Zfp236
H2-DMa
Brd2
Mrpl45
Gm13277
Gm13276
Mgst1
Crebrf
Tmem65
Ywhae
Glg1
Rbm39
Ubn2
Trp53inp1
Rnpc3
Ppm1a
Fam162a
Ccdc58
Fbl
Dyrk1b
Rplp0
Gcn1
Wbp4
Elf1
Npm1
Rmi1
Hnrnpk
Acyp2
Tmem167b
Mogs
Mrpl53
Tnks2
Ccdc142
Gab1
Zfp143
Cltc
Usp4
Gpx1
Tmem183a
Atf1
Cdkn1b
Eapp
Zfand5
Litaf
Nckap5l
Zfp868
Cbx7
Rgs2
Zer1
Tbc1d13
Plpp3
Eci1
Fnta
Chrac1
Rasl11b
Zfp869
Tmem50a
Syf2
Rsrp1
Nt5c2
Itfg2
Znfx1
Morf4l1
Mllt10
Skida1
Wwp2
Vamp8
Vamp5
Cldn34d
Ctsl
Rfx3
Zfp740
Csad
Camk1
Pkn1
Sik2
Ccng1
Kctd20
Rab5a
Pxt1
Zfp248
Relb
Itm2b
Emilin1
Khk
Slc35b2
Hsp90ab1
Mcur1
Mak16
Tmem125
Tbrg1
Ier3
Flot1
Brwd1
Msantd2
Gpr146
Wdr19
Khsrp
Slc25a41
Gmeb2
Pcmtd1
Agbl3
Tia1
Pcyox1
Tasor
Csnk2a1
Hipk3
Cdkn2aip
Herpud1
Ccl2
Sppl2a
Marchf7
Kansl1
Vamp2
Zfp605
Plcxd1
Gtpbp6
Nabp1
Arhgap12
Samd9l
Tm9sf3
Lrrc58
Gm36028
Supt3
Cap1
Acin1
1700123O20Rik
Lyplal1
Plk2
Slc3a2
Phf10
Cirbp
Fam174c
Amn1
Retsat
Elmod3
Arl2bp
Ttc7
Lrrc61
Aga
Mtif2
Hmox1
Calr
Ndufb8
Hif1an
Sec31b
Rock2
Clk1
Gpr85
Lbh
Cct2
Gnas
Sgo1
Dusp10
1700056E22Rik
Pdcd4
Nr3c2
Csf1
Ccdc91
Mknk2
Gstp2
Gstp1
Sugp1
Mau2
Tnrc6c
Tnp2
Socs1
Prm3
Prm2
Arpc1b
Zfp319
Usb1
Psap
Patj
Sspn
Sirt4
Cul5
Fbxo15
Timm21
Ptpn2
Wnk1
Adnp2
Tgfbr3l
Map2k7
H2-K1
Cpeb2
Sec61a2
Fn1
Klf6
Tpk1
Zfp397
Vdac3
Nfkbie
Zbed3
Nop53
Fscn1
Hnrnpdl
Enoph1
Pop7
Nup107
Dhrs7
Brd1
Wdr45
Praf2
Inafm1
Klhdc1
Gigyf1
Ptma
Gng12
Btg2
Siah1a
Nop2
Asah2
Dnajb4
Fubp1
Pabpc1
Gas1
Rtn4
Wtap
Timmdc1
Ephb4
Rcn2
Cat
Maf
Raf1
Rab1a
Ilkap
Chd4
Spr
Teddm1a
Glul
Atp2a2
Ppp1ccb
Ppp1cc
Taok1
Znrf1
Cutc
Cox15
Sox4
Gna12
BC005537
Map1lc3b
Tmf1
Fbxo31
Mphosph9
2810006K23Rik
Wwc2
Tmem87a
Ganc
Pim3
Ncor1
Pigl
Sft2d3
Prkag1
Zfp68
A430033K04Rik
Dgcr6
Stat3
Dynll2
Trim28
Sv2a
Sf3b4
Snai1
Cul3
Chmp2a
Gcc1
Fscn3
Arf5
Gtf2a1
Mrpl2
Klc4
Cul7
Kdm3b
Cpne2
Gtf2b
Tmem168
Prrc2a
Tmem39a
Pan3
Poglut1
Slc18a1
Atp6v1b2
Rprd2
Rybp
Bri3
Zfyve16
Map2k2
Creb3l3
Tmpo
Ube2l3
Rimbp3
Senp5
Ppdpf
Ralbp1
Sptan1
F3
Ndfip1
Lrp6
Otub1
Epc2
Ppp1r3c
Pck2
Sebox
Tmem199
Poldip2
Txndc15
Tmem209
Ssmem1
Rdh5
Cd63
Pdcl
Rhob
Tcf25
Oxsm
Ngly1
Nuak1
Klhdc2
Fam189b
Scamp3
Ttk
Lmna
Cd80
Adprh
Nol12
Lgals1
Plec
Gxylt2
Tra2a
Socs3
Ppp2r3a
Cdkn2b
Cyth2
Rnf14
Ube2b
Cdkl3
Zc3h6
Gem
Ilf2
Tomt
Lamtor1
Anapc15
Dazap2
Npr1
Tlk2
Prrc2b
Jpt1
Tax1bp1
C3
2700081O15Rik
Ppa2
Pkd1
Trmt44
Acox3
Errfi1
D5Ertd579e
Nfkbiz
Uqcc3
Kctd5
Ubxn1
Elk4
Micu3
Lhx9
2310009B15Rik
Dnaja1
Ppp1r2
Flcn
Tnfaip2
Zfp617
Rhog
Birc2
Smad1
Cd248
Pum3
Klf11
Lasp1
Zfp69
Mmp11
Gm867
Chchd10
Vasn
Upf3a
Lig3
B3gnt9
Tradd
Fbxl8
H3c10
H2bc13
H2ac13
H2bc14
Kansl2
Tgfbr3
Hlcs
Dyrk1a
Plin5
Plin4
Yeats2
Med28
Rnf19b
Paip2
Fbxo6
Fbxo44
Fbxo2
Cblb
Itgb1
Sod1
Irs2
Bmt2
H2bc4
H2ac6
Klf2
Pura
Traf4
Pkd2
Pccb
Plcg1
Mcl1
Galk2
Cops2
Zglp1
Rfx1
Mos
Tusc3
Adamts5
Tmsb4x
Usp53
Hnrnpm
Rpl35a
Lmln
Iqcg
Zfp384
Gbe1
Dda1
Nr2c2
Uhrf2
Ano8
Pianp
Taf12
Gmeb1
Ttc17
Polb
Kansl1l
Ypel3
Tbx6
Palld
Gsto1
Ubald1
Mgrn1
Aven
Gtdc1
Cdc42ep3
Gamt
Dazap1
Nsmf
Srsf5
P4hb
Arhgdia
Ndst2
Adck2
S100a10
Nfatc3
Rnf10
Coq5
Pcmt1
Dlgap4
Cpt1b
Chkb
Lats1
Fzd1
Necap1
Pot1a
Slc12a2
Nfkbil1
Ddx39b
Atp6v1g2
Lrif1
Ulk1
Baiap2
Tomm34
Stk4
Nrip1
Cstb
Slc17a7
Pih1d1
Aldh16a1
Ctsb
Adnp
Ddx59
H3f3a
4833420G17Rik
Strn4
Fkrp
Il10rb
Fstl1
Ssbp1
C330018D20Rik
Akap1
Mmaa
Ube2v2
Ksr1
Thap1
Rtkn
Mphosph6
Cdc42
Atp5g2
Nrbp1
Sike1
Rufy1
Vps54
Id1
Trmt10c
Pcnp
Zbtb37
Arl15
Fmc1
Zfp821
Zbtb44
H4c12
H2bc15
H2ac15
Pole4
Pcf11
Nipsnap2
Mrps17
Gpr155
Troap
Tmem237
Zbtb11
Rpl24
Zcwpw1
Ppp1r35
Mepce
Dennd4b
Tef
Trmt1l
Swt1
Patz1
Kmt2e
Sub1
Ubr1
Tmem62
Yme1l1
Mastl
Nudt4
Lyz2
Ywhaz
Arrdc3
Mef2a
Sdhaf2
Cpsf7
Atxn1l
Rpl26
Scand1
Cnbd2
Thap7
Aff4
Dusp11
Foxj2
Eef2k
Ccni
2010109A12Rik
Dennd6b
Dync1li2
Retreg2
Cnppd1
Slc23a3
Crot
Atp6v1g1
Per3
Bbs2
Ripor1
Akap8
Nfe2l2
Rab11b
Lox
St3gal2
Zmat1
Pick1
Rplp1
Zfp438
Pxdn
Tti2
Sde2
Rbm12
Cpne1
Zfp672
Sh3bp5l
Rbm4b
Kpna2
Orc4
Mbd5
Maged1
Tdrd1
Ccdc186
Npm3
Fgf8
Homer3
Fam227b
Dtwd1
Mtmr2
Yars2
Snrpb
Rasl11a
Mrtfb
Pdpk1
Snn
Zfp423
Boc
Selenot
Nsfl1c
Seh1l
Lemd2
Cers5
Bdnf
Srbd1
Lifr
Rnf122
Frmd6
E4f1
Ppp3cb
Cebpg
Drg1
Asb8
Kbtbd3
Smarcd1
Asic1
Cdkn2a
Pink1
Tmem170
Kif13a
Csnk1a1
Ptpn6
Grcc10
Haus1
Atp5a1
Tnfsf13
Tnfsfm13
Tnfsf12
Msh5
Usp40
Zfp11
Specc1l
Hoatz
Lnpep
Rbm14
Gm21992
Memo1
Slc29a3
Usp32
Sp7
Slc25a15
Lrrk2
Pafah1b1
Col3a1
Dusp7
Zfp703
Txnl1
Caprin1
Dzip3
Cip2a
Kdm3a
Ggnbp2
Coq9
Ciapin1
Pigw
Myo19
Gnpat
2810004N23Rik
Tmem128
Pcgf3
Grsf1
Mppe1
Dcdc2b
Iqcc
Ccdc28b
Trib3
Fasn
Trir
Tnpo2
Get3
Ankrd17
Rnf146
Osmr
Zbtb6
Rc3h2
Slc9a1
4930415O20Rik
Ccnt1
Zfp959
Nras
Dtwd2
Hp1bp3
Ei24
Rcc1
Lyrm2
Alas1
Ttc26