ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620286 | NIH/3T3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◣ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Greb1
Aldh9a1
Hexb
Il31ra
Kpna1
Nkx2-6
Gm10710
Dchs2
Dnah7b
Sspn
Txndc11
Rsph3b
Col6a6
Cerk
Rsph3a
Osbpl1a
Zfp945
Cd209a
Olfr1274
Gm525
Abhd6
Olfr806
Tmem18
Pgk1
Zfp791
Tmem125
Cox8c
Cldn34d
Wwox
Pramel32
Ifna13
Setd4
Cbr1
Taar6
Taar7a
E030030I06Rik
Atp5g1
Tmem267
Zfp598
Npw
Vmn2r4
Pknox1
Pald1
Syn2
Zfp263
Aadacl2fm1
Dcaf5
Crabp2
Oasl1
Wasf3
Zfp143
Abca3
Abca17
Gm13285
Gm13290
Gm13289
Ifnz
Gm13272
Pcdh20
Gm13287
Gm13279
Gm13278
Gm13275
Gm13288
Gm13276
Gm13277
Gas1
Dcdc2a
Tab1
Fstl1
Hgsnat
Mmaa
Ncbp2
0610012G03Rik
Eef2
Dapk3
Rps3a1
Mkln1
Arhgap10
F3
Dnajc11
Trim65
Mrpl38
Zbtb4
Slc35g3
Polr2a
Unk
H3f3b
H3c15
H3c14
H2ac19
H2ac18
H4f16
H2aj
Fbxw4
Tex14
H4bc24
H2bc23
H2ac24
H2ac23
H4c14
H3c13
H2bc18
H4c3
H1f6
H4c18
H2bc6
Cxcl1
Rps19bp1
Atf4
H3c3
H2bc3
Eif1
Cwc22
Errfi1
H4c4
H3c4
Actb
Mt1
Mt2
Polg2
Ddx5
Cep95
H2bc7
H2ac7
H1f2
H1f3
H3c6
Ubc
Jund
Iqcn
H2bc8
H2ac8
Mat2a
Csf2ra
Fth1
Actg1
Klf7
Eef1a1
H3c11
H2bc22
H2ac22
H1f5
Hnrnpa2b1
Cbx3
Prdx2
Junb
H3c8
Eapp
Ube2a
Eif4a2
H1f4
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Ttc39d
Ppp1r10
Mrps18b
Atat1
Ier3
Flot1
Tob1
Fyco1
Hspa8
H4c17
Arf6
Hspa5
Syngr1
Rpl3
Zfand5
Btg1
Nfkbia
H4c6
Tsc22d1
Nemf
Dusp1
H2ac10
Egr1
H4c8
Kif2c
Taf12
Gmeb1
Ubb
Ppia
Mcl1
Slc35e3
Poldip3
Gm3448
Gm3417
Ctnnb1
Nabp1
Mdm2
Vim
Ftl1
Bax
Ier2
Acacb
Id3
H3c2
H2bc21
H2ac21
H2ac20
H2ac4
Fam53c
Cdc25c
H4c2
Raly
H4c1
H3c1
Gtf3c6
Ddit4
Sp1
Nr4a1
Cited2
Arl4d
Tecpr1
Fam227b
Dtwd1
Ifrd1
Srsf2
Mfsd11
Adamts1
Zyx
H3c10
H2bc13
H2ac13
Calm1
Chac1
Fbxl18
Thbs1
Zfp949
Dusp5
Vcl
Mettl23
Jmjd6
H2bc14
Zfp36l1
Fus
Cdkn1a
Slc38a2
Rplp0
Gcn1
Sdc4
Cirbp
Cebpd
Sirt4
Sqstm1
Cdh12
Tcte3
Ermard
Herpud1
Cebpb
Nfkbiz
Fam174c
Btg2
Slc14a2
Fos
Cltc
Pnrc1
Zfp36l2
Id1
Tpt1
Lmna
BC005537
Txnip
Ppp1r12a
Rps29
Lrr1
Lima1
Sympk
Ccnl1
Prdx1
Ccn1
H1f1
Clcn4
Olfr855
Olfr854
Znfx1
Pcif1
Scrib
Ulk2
Tmem107
Tuba1c
Clec2d
Calcoco1
Yeats4
Dnajb4
Srsf5
H2-DMa
Tmem167b
Odc1
Ptp4a1
Efcab2
Plk2
Hsp90aa1
Tuba1a
Sgk1
Sik1
Rbm39
Nfat5
Tpm1
Hmbs
H2ax
Dpagt1
Srsf6
Rgs2
Brd2
Dnaja1
Srsf3
Palld
Slc35b2
Litaf
H2bc4
H2ac6
Pcbp1
Rps20
Dnajb1
Ddx3x
Serpine1
Slc25a4
Uspl1
Ap1g1
Fubp1
Myl12a
LOC547349
H3c7
H2bc9
Hsp90ab1
Tuba1b
Slc3a2
Vmn2r102
Hnrnpu
Ywhaz
Fn1
Ptgs2
Tiparp
H4c11
Ints6
Ccl7
Serinc3
Tti2
Zfp36
B2m
Sfi1
Eif4enif1
Epc1
Cdc42
Nup62
Il4i1b
Atf5
Rhob
9030025P20Rik
Hnrnph1
Tmem123
Timp2
Car5a
Banp
Ddx23
Usp4
Gpx1
Klf6
Zfp869
Rptor
Zfp513
Snx17
Eif2b4
Tra2a
Phlda1
Hnrnpab
Rcc1
Ccl2
Eif5
1810013L24Rik
Calm2
Hexim2
Itga5
Gtf2b
Plekhg2
Kmt2e
Taf4
Zfp207
5730455P16Rik
H2-L
H2-D1
Col1a1
9430015G10Rik
Setd5
Eif4a1
Cd68
Itgb1
Cnot1
Dync1i2
Mrpl44
Insig1
Med1
Cdk12
H4c12
H2bc15
H2ac15
Rap1b
Selenop
Dstn
Stat3
Pabpc1
Larp4
Ncl
Amn1
Kntc1
Ier5
Flna
Emd
Phlda3
Zfp963
Ppbp
Myh9
Pole4
Pdlim5
Zc3h6
Napepld
Sde2
Hmox1
Tmem50a
Syf2
Rsrp1
Phf12
Tmsb4x
Shc1
Hmgb2
Smim10l1
Csf1
Tmed2
Rilpl1
Zfp1
Lag3
Gapdh
Aaas
Xcr1
Gm3435
Jun
Scaf1
Rras
Nfe2l2
Ppp1r15a
Plekha4
Hif1a
Mbd6
Ddit3
Rnf10
Coq5
Chmp4b
Resf1
Crem
Urgcp
Pus1
Ep400
Ndufs7
Retsat
Elmod3
Rad23a
Trib3
Mknk2
Gcat
Coq10b
Zfp655
G3bp1
Atox1
Tmem129
Tacc3
Slbp
Ptms
Sptan1
Wsb1
Slc18b1
Irf1
Pkd1
Prcc
Pim3
Esyt2
Zfp868
Cxcl5
Atp6v0c
Amdhd2
Tmsb10
Senp3
Nfkbil1
Ddx39b
Atp6v1g2
Rdm1
Gem
Mrpl20
Ccnl2
Slc25a3
Wnk1
H1f0
Calr
Actr3
Rps12
Tob2
Kmt5b
Cfl1
Gls
Trmt10c
Pcnp
Ppp1r2
Eif3a
Wdr81
Eif3c
Zbtb37
Socs3
Pdss2
Tra2b
Klf2
Uqcc3
Pdlim7
Rpl10a
Taf13
Matr3
Teddm1a
Glul
Slc9a1
Tctex1d4
Btbd19
Opa1
Adnp
Nufip2
Rheb
Nip7
Cog8
Son
Gm36712
Gart
Dgat1
Ctsl
Pprc1
Ppig
Gm14595
Gm14590
Pds5b
N4bp2l2
Arrdc2
Rabgef1
Spen
Piezo1
Rnf19b
Fam166a
Atp2a2
Snx5
Mgme1
Eif4g2
Fosb
Egr2
Rnft1
Mettl25
Ccdc59
Ldha
Stpg3
Usp48
Map2k2
Creb3l3
Ywhag
Tmem168
Csrnp2
Srsf1
Aff4
Raf1
Bach1
Ptpn2
Zbed5
Chchd2
Map1lc3b
Sec61a1
Flad1
Cks1b
Hnrnpa1
Cbx5
Birc2
Csnk1a1
H2-K1
Ptpn6
Grcc10
Hnrnph3
Morf4l1
Sp3
Ndel1
Mthfd2
Mob1a
Copz1
Ptma
Lbh
Cds2
Baiap2
Cpeb2
Chrac1
Chmp6
Gadd45g
Slc39a4
Cpsf1
Gtf2a1
Kdm6b
Zfp866
Mtf2
Slc2a1
Wdr70
Sod1
Homer1
Trp53rkb
Arl5c
Rock2
Kctd5
S100a10
Pdf
Arntl
Ncor1
Mterf1b
Nsd3
Letm2
Tmem230
Phf23
Pcna
Gabarap
Dvl2
Zc3h10
Tinf2
Rpl41
Nedd8
Mrpl45
Gmpr2
Idh3b
Ugdh
Gsto1
Gadd45a
Txnl1
Mbnl1
9530077C05Rik
Dynll1
Nup155
Ets2
Tlcd2
Sub1
Vdr
Pias4
Arl14ep
Cd80
Adprh
Arih1
Ahnak
Slc39a10
Hipk3
Slc39a1
Crtc2
Gpx4
Ubxn1
Rabggtb
Hmgn2
Pbld2
Ifi211
Nfyc
Fgfbp3
Btaf1
Top1
Fitm2
Selenot
Sf3b1
Txn1
Wbp4
Elf1
Ptges2
Eif2b5
Acta2
Sepsecs
Sppl2a
Vegfa
Fasn
Galk2
Cops2
Sned1
Ccdc88a
Adnp2
Hdlbp
Col4a2
Eif4e2
Chrng
Slc5a3
Mrps6
Gabpb2
Zfp637
Tmem175
Plxdc1
Gak
Rab5if
Lrrc8a
Nsrp1
Gadd45b
Rpl9
Lias
Hnrnpa3
Prrc2a
Parva
Phb
Dusp2
Astl
Pigl
Msh4
Zbtb11
Rpl24
Gpr84
Aacs
Rab11b
Gstp2
Gstp1
Tent5c
Sharpin
Sf1
Maf1
Cyc1
Ddx59
Npm1
Mmadhc
Sik2
Egr3
P4hb
Arhgdia
Kdm5a
Ccdc77
Ep300
Ubald1
Rmi1
Rab1a
Mgrn1
Hnrnpk
Tmpo
Rps8
Ppm1a
Rrn3
Tubb4b
Slc34a3
Tut7
Ero1a
Lox
Rfx3
Pkm
Kansl2
Atp6v1h
Stau1
Cct8
Commd1
Cct4
Ranbp2
1700001P01Rik
Rpl17
BC031181
P4ha1
Hspa4
Ap2m1
Nol12
Lgals1
Ndfip1
Mtg1
Mrpl35
Immt
Rabl6
Ccdc183
Ccng1
Polr2m
Eci1
Ppp6c
Pnp
Sun2
Gm35339
Htra2
Dqx1
Dpy19l4
Aup1
Fam43a
Cct2
Spindoc
4930415O20Rik
Oat
Frmd6
Fosl2
Tomm34
Stk4
Cox20
Gars
Rbks
Psmd7
Clk1
Babam2
Lrif1
Rplp1
Paxip1
Tcf25
Gmfb
Cgrrf1
Brwd1
Arl8b
Arf4
Ufl1
Tle3
Plec
Angptl4
Puf60
Pafah1b1
Rps27rt
Rps27
Rab13
Jak1
Fkbp1a
Mylip
Fbxl3
Tbcd
Rab7
Aldoa
Rfc4
Tm7sf2
Hexim1
Dcp1a
Cap1
Calu
Kat7
Atf1
Slc25a32
Dcaf13
Uhmk1
Tkfc
Ddb1
Slc7a5
Zcwpw2
Gzmk
Azi2
Ndufs4
Ankrd11
Trib1
Nop14
Grk4
Filip1l
Ywhae
Elk4
Anln
Mrpl19
Ndufb8
Jpt1
Hif1an
Rdh14
Dusp11
Adpgk
Zglp1
Ube2j2
Pafah1b2
Arl15
Irs2
Tmem115
Flcn
Trmt44
Acox3
Cul1
Pigq
Nhlrc4
Hmgcr
Rpl5
Srrm2
Luc7l
Fam234a
Phf2
Ctdp1
Chka
Trmo
LOC666331
Gm11634
Tmem79
Smg5
Hspa9
Secisbp2l
Pten
Fem1b
Pif1
H3f3a
Sec62
Phf20l1
Notch2
Knl1
Tsnaxip1
Saraf
Ranbp10
Rab42
Leprotl1
Tmem87b
Rab33b
S1pr4
Ncln
Tm9sf3
Ctdsp1
Crebl2
Caprin1
Prnp
Prn
Ppp1ccb
Ppp1cc
Ube2l3
Rimbp3
Cotl1
Trir
Tnpo2
Rps6
Nubp1
Mterf1a
Mrpl39
Hmgn1
Get3
Sec24a
Sar1b
Lrp6
Sox9
Rnf34
Niban2
Cnbp
Serbp1
Ift46
Arcn1
Rprd2
Ccnt1
Ube2h
H2bu2
Tada3
Arpc4
Aven
Ttc41
Hsp90b1
Lcn2
1110008P14Rik
Rnaseh2a
Lrrc59
Ube2d3
Ttyh2
Rpl38
Nrf1
Relb
Ppp2cb
Anapc5
Ing1
Cars2
Rraga
Ndufa9
Akap3
Fscn1
Pdia3
Ndufaf5
Esf1
Elovl5
Catsper2
Snx18
Usp53
Slc25a11
Rnf167
Mrpl58
Zer1
Tbc1d13
Prkar1a
Kat6a
Mmp2
Twf1
Rpgrip1
Lenep
Pura
Klhl24
Atf6
Tmem39a
St3gal2
Ilf2
Cald1
Nme1
Atp5g2
Pitpna
Atg10
Rbl2
Nptn
Mllt10
Alyref2
Zdhhc1
Tubb6
Gmeb2
Plekho2
Med17
Dhx9
Lsmem2
Sugct
Nup153
Mplkip
G3bp2
Atp5g3
Map3k6
Ccdc9
Zfp706
Rhebl1
Kmt2d
Gnas
Tpm4
Pcmt1