ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620289 | NIH/3T3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◣ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Txndc11
Sspn
Pgk1
Aldh9a1
Hexb
Il31ra
Kpna1
Greb1
Nkx2-6
Cerk
Dnah7b
Gm10710
Dchs2
Rsph3b
Col6a6
Osbpl1a
Cldn34d
Cd209a
Abca3
Abca17
Olfr1274
Zfp945
Rsph3a
Tmem125
Abhd6
Olfr806
Gm525
Pramel32
Ifna13
E030030I06Rik
Fbxw4
Gas1
Zfp791
Vmn2r4
Gm13285
Gm13290
Gm13289
Ifnz
Gm13272
Slc39a4
Cpsf1
Tmem18
Cox8c
Oasl1
Ddit4
Tle2
H3c15
H3c14
H2ac19
H2ac18
H4c14
H3c13
H2bc18
Lrp6
Klf7
Uchl5
Ro60
H2bc21
H2ac21
H2ac20
Gm13287
Gm13279
Gm13278
Gm13275
Gm13288
Pten
Zfp598
Npw
H2bu2
Rnf187
Zfp36l2
Lox
Hexim2
Speer4f1
Champ1
H3c11
H2bc22
H2ac22
H1f5
Trim50
Fkbp6
H1f3
H3c6
H2bc8
H2ac8
Igfbp4
Wwox
Zfp474
Arl8b
Cenpu
Ccdc88a
Col6a2
Pknox1
Aadacl2fm1
Nfat5
Mettl25
Ccdc59
Trdmt1
Ubtfl1
H3c2
H4c2
H4c1
H3c1
H1f1
Klf6
Tab1
Msmo1
H3c3
H2bc3
H1f2
H2ac4
Pald1
Crybg1
H4c12
H2bc15
H2ac15
Nos3
Kcnh2
Zfand5
Rubcn
Fyttd1
Kpnb1
Enc1
Ugt1a7c
Ugt1a6b
Rad54l2
H3c8
H4c6
H3c7
H2bc9
Gm13277
Gm13276
Cltc
Eps15
Lrriq3
Fpgt
Adamts1
Tle1
H2bc6
H4c4
H3c4
H2bc7
H2ac7
Zfp143
Mtf2
Hmgcr
H3c10
H2bc13
H2ac13
H2bc14
Pdgfc
Trp53rkb
Rdh14
H4c3
H1f6
Fra10ac1
Ssh2
Stx16
Errfi1
Mrpl39
Actg1
Nsun6
Arl5b
Scd2
Rps19bp1
Atf4
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Mrpl44
Ccng1
Mtap
Hdlbp
LOC666331
Gm11634
Septin2
Frg2f1
Foxj3
Plk2
Ankrd40
Slc33a1
Chd2
Otud7b
Prl2c2
Unk
H3f3b
Srsf1
Man2b2
Cited2
Calm1
Plcd3
Acbd4
Ncam1
Aaas
Hoxd3
Hoxd9
Hoxd8
Gm13286
Gm13283
Gm13271
Exosc6
Fam83a
Tmem256
Plscr3
Nlgn2
Pigc
4930558K02Rik
Tmem17
Ccnl1
Usp30
Svop
Tmem242
Cep135
Gm3448
Gm3417
9030025P20Rik
Lats2
Pkd2
Ywhah
Dhx8
H1f4
Mterf1a
Rnf6
Cdk8
Mterf1b
Atn1
Aacs
Shisa4
Smim26
Dtd1
Gtf2i
Dock7
1700034E13Rik
Lpcat2b
Btbd8
D030056L22Rik
Uspl1
Hnrnpu
Zc3h6
Atp2c2
Cyp51
Ctnnb1
Rab33b
Galk2
Cops2
Rbx1
Eef1a1
Cebpd
Hgsnat
Smg8
Ccn2
Csf2ra
Pla2g4b
Jmjd7
H4c11
Dcaf5
Tcea1
Rbm6
Ankrd1
H2ac10
H4c8
Lpar1
Nfyc
Fem1b
Tab2
Arf1
Zfp959
Sv2a
Sf3b4
Ssbp2
Ttc39d
Ifi211
Ep300
Ncbp2
0610012G03Rik
Mrpl58
Pacsin3
Arfgap2
Kctd2
Atp5h
Morf4l1
Top1
Il6ra
Apobec3
Trib1
Rraga
Dmap1
Mrpl33
Zfhx4
Ndufs7
Zcrb1
Pphln1
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
Ndel1
Gars
Trmt1
Nacc1
Slc39a13
Eif4a2
Csf1
Cox20
Rps27a
Clhc1
Ugt1a6a
Erbb2
Rps8
Copb1
Fam120b
Heatr5a
Erlec1
Asb3
Ubc
Nemf
Txnl1
Pfdn5
Myg1
Mettl9
Metap1d
Abhd1
Cgref1
Hrob
Tuba1a
Hmox1
Sp3
Psmd3
Dr1
Col3a1
Wdr27
1600012H06Rik
4931408C20Rik
Gm4312
Gm4307
Gm4305
Gm4303
Gm4302
Gm4301
Fn1
Ubtd2
Trim65
Mrpl38
Prl2c5
H4f16
H2aj
Rdm1
Txn1
Mmadhc
Trp53rka
Tbc1d31
Zfp438
Ptn
Ciao3
Birc6
Pdk4
Ube2f
1700001O22Rik
Fam227b
Dtwd1
Rrn3
Trim28
Yap1
Tob1
Fosl2
Aasdh
Ago1
Trabd2b
Actb
Nabp1
Gcat
H1f0
Arl5c
Plxdc1
Mmaa
Mgat1
Nfkbil1
Ddx39b
Atp6v1g2
Nup54
Faap20
Pcdh18
Tmsb10
Bms1
Usp47
Them4
Phax
Aldh7a1
Tgfbr3
2310022B05Rik
Arid1a
Eml1
Chordc1
Dzip3
Cip2a
Ube2g2
Tmem30a
Foxf2
Pak3
Znfx1
Hnrnph1
Mtdh
Camk1
B3gntl1
Arl4d
Raf1
Dhx16
Cr1l
Rtn4rl1
Dph1
Oma1
Pdzrn3
Zfp41
Ppp1r15b
Insr
Sfi1
Eif4enif1
Atxn7l3b
Haspin
Kansl3
Fer1l5
Zfp710
Myo10
Rhob
Wls
Rps29
Lrr1
Resf1
Arl14ep
Lrrc59
Mapkbp1
Sit1
Ccdc107
Rpl31
Amotl2
Traf7
Rab26
Ropn1l
Tapbp
Mideas
Rgl2
Srp68
Galr2
Efnb2
Rnf11
Btg1
Mbnl1
Ppp2cb
Cldn12
Sem1
Tle6
Ppp1r12a
Ulk2
Plin2
Tmem131
Col1a1
Serinc1
Rhou
Eefsec
Poldip3
Cdkn1a
Efcab2
Eif5
Cd80
Adprh
Gpr84
Mapk1ip1l
Rcn2
Srp19
Bbs5
Ppp1r9b
Mansc1
Borcs5
Dpy19l4
Rad9b
Elp1
Abitram
Crocc2
Ftl1
Bax
Wdr70
Nup155
Mrps2
1700007K13Rik
Pex2
Tmem139
Casp2
Bnc2
Dnajc19
Nsf
Denr
Polg2
Ddx5
Cep95
Tle4
Ppip5k2
Gin1
Eef1g
Pdss2
Eif4e2
Chrng
Col1a2
Medag
Rps27l
Tomm7
Flrt2
Rapgef3
Foxg1
H4c17
Pcbp1
Ap1g1
Pdia3
Catsper2
Hnrnpdl
Enoph1
Ythdf2
Tekt2
Adprhl2
Prcd
Cygb
Larp4
Pole3
Alad
4933430I17Rik
Utp3
Maml3
F3
Vegfa
Ube2g1
Fzd7
Vdr
Sppl2a
Rps3a1
Eci1
Ttc4
Mnd1
Nr1d1
Ywhaz
Clptm1l
Ndst2
Net1
Zfp827
Hif1a
Kansl2
Crlf3
Atad5
Tnrc18
Fat4
Zfp706
Rab5a
Trpm7
Efemp1
Gm2237
Cav1
Zfp213
Fbxo7
Aqp6
Aqp5
Bpifc
Lurap1l
Thrb
Rpl21
Tpk1
C2cd5
Rnaset2b
Klhdc2
Rnaset2a
Lekr1
Lrp11
Sepsecs
Kmt2e
Usp53
Pofut2
Dclre1b
Ap4b1
Cav2
Efcab14
Rbm39
Cnbp
Isy1
Mpp7
Synpo
Cdkn1b
Eif4h
Psma6
H2bc4
H2ac6
Htra2
Dqx1
Aup1
Zfpl1
Vps51
Tmem262
Cdca5
Gm550
Rpl29
Acy1
Zbtb4
Slc35g3
Polr2a
Setd4
Cbr1
Tex14
Cxcl1
Eif1
Cwc22
Mt1
Mt2
Jund
Iqcn
Mat2a
Fth1
Hnrnpa2b1
Cbx3
Prdx2
Junb
Eapp
Ube2a
Ppp1r10
Mrps18b
Atat1
Ier3
Flot1
Fyco1
Hspa8
Arf6
Hspa5
Syngr1
Rpl3
Nfkbia
Tsc22d1
Dusp1
Egr1
Kif2c
Taf12
Gmeb1
Ubb
Ppia
Mcl1
Slc35e3
Mdm2
Vim
Ier2
Acacb
Id3
Fam53c
Cdc25c
Raly
Gtf3c6
Sp1
Nr4a1
Tecpr1
Ifrd1
Srsf2
Mfsd11
Zyx
Chac1
Fbxl18
Thbs1
Zfp949
Dusp5
Vcl
Mettl23
Jmjd6
Tmem267
Zfp36l1
Fus
Slc38a2
Rplp0
Gcn1
Sdc4
Cirbp
Sirt4
Sqstm1
Cdh12
Tcte3
Ermard
Herpud1
Cebpb
Nfkbiz
Fam174c
Btg2
Slc14a2
Fos
Pnrc1
Id1
Tpt1
Lmna
BC005537
Txnip
Lima1
Sympk
Prdx1
Ccn1
Clcn4
Olfr855
Olfr854
Pcif1
Scrib
Tmem107
Tuba1c
Clec2d
Calcoco1
Yeats4
Dnajb4
Srsf5
H2-DMa
Tmem167b
Odc1
Ptp4a1
Hsp90aa1
Sgk1
Sik1
Eef2
Dapk3
Tpm1
Hmbs
H2ax
Dpagt1
Srsf6
Rgs2
Brd2
Dnaja1
Srsf3
Palld
Slc35b2
Litaf
Rps20
Dnajb1
Ddx3x
Serpine1
Slc25a4
Fubp1
Myl12a
LOC547349
Hsp90ab1
Tuba1b
Slc3a2
Vmn2r102
Ptgs2
Tiparp
Ints6
Ccl7
Serinc3
Tti2
Zfp36
B2m
Epc1
Cdc42
Nup62
Il4i1b
Atf5
Tmem123
Timp2
Car5a
Banp
Atp5g1
Ddx23
Usp4
Gpx1
Zfp869
Rptor
Zfp513
Snx17
Eif2b4
Tra2a
Phlda1
Hnrnpab
Rcc1
Ccl2
1810013L24Rik
Calm2
Itga5
Gtf2b
Plekhg2
Taf4
Zfp207
5730455P16Rik
H2-L
H2-D1
9430015G10Rik
Setd5
Eif4a1
Cd68
Itgb1
Cnot1
Dync1i2
Insig1
Med1
Cdk12
Rap1b
Selenop
Dstn
Stat3
Pabpc1
Ncl
Amn1
Kntc1
Ier5
Flna
Emd
Phlda3
Zfp963
Ppbp
Myh9
Pole4
Pdlim5
Napepld
Sde2
Tmem50a
Syf2
Rsrp1
Phf12
Tmsb4x
Shc1
Hmgb2
Smim10l1
Tmed2
Rilpl1
Zfp1
Lag3
Gapdh
Xcr1
Gm3435
Jun
Scaf1
Rras
Nfe2l2
Ppp1r15a
Plekha4
Mbd6
Ddit3
Rnf10
Coq5
Chmp4b
Crem
Urgcp
Pus1
Ep400
Retsat
Elmod3
Rad23a
Trib3
Mknk2
Coq10b
Zfp655
G3bp1
Atox1
Tmem129
Tacc3
Slbp
Ptms
Sptan1
Wsb1
Slc18b1
Irf1
Pkd1
Prcc
Pim3
Esyt2
Zfp868
Cxcl5
Atp6v0c
Amdhd2
Senp3
Gem
Mrpl20
Ccnl2
Slc25a3
Wnk1
Calr
Actr3
Rps12
Tob2
Kmt5b
Cfl1
Gls
Trmt10c
Pcnp
Ppp1r2
Eif3a
Wdr81
Eif3c
Zbtb37
Socs3
Tra2b
Klf2
Uqcc3
Pdlim7
Rpl10a
Taf13
Matr3
Teddm1a
Glul
Slc9a1
Fstl1
Tctex1d4
Btbd19
Opa1
Adnp
Nufip2
Rheb
Nip7
Cog8
Son
Gm36712
Gart
Dgat1
Ctsl
Pprc1
Ppig
Gm14595
Gm14590
Pds5b
N4bp2l2
Arrdc2
Rabgef1
Spen
Piezo1
Rnf19b
Fam166a
Atp2a2
Snx5
Mgme1
Eif4g2
Fosb
Egr2
Rnft1
Ldha
Stpg3
Usp48
Map2k2
Creb3l3
Ywhag
Tmem168
Csrnp2
Aff4
Bach1
Ptpn2
Zbed5
Chchd2
Map1lc3b
Sec61a1
Flad1
Cks1b
Hnrnpa1
Cbx5
Birc2
Csnk1a1
H2-K1
Ptpn6
Grcc10
Hnrnph3
Mthfd2
Mob1a
Copz1
Ptma
Lbh
Cds2
Baiap2
Cpeb2
Chrac1
Chmp6
Gadd45g
Gtf2a1
Kdm6b
Zfp866
Slc2a1
Sod1
Homer1
Rock2
Kctd5
S100a10
Pdf
Arntl
Ncor1
Nsd3
Letm2
Tmem230
Phf23
Pcna
Gabarap
Dvl2
Zc3h10
Tinf2
Rpl41
Nedd8
Mrpl45
Gmpr2
Idh3b
Ugdh
Gsto1
Gadd45a
9530077C05Rik
Dynll1
Ets2
Tlcd2