ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10045306 | LNCAP
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◢ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◣ SRX10045306: LNCAP

◢ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◢ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

GET4
TSPAN31
MARCHF9
CDK4
UBE2Q1
CHRNB2
HEXA
AP5Z1
RNASEH2C
KAT5
SYNGAP1
PHF1
CUTA
WASHC2A
ILF3
RPUSD4
FAM118B
ATP6V0D1
AGRP
LAMP1
EFNA3
UVRAG
PIP4P1
OSGEP
APEX1
WASHC2C
MTHFR
CLCN6
GABARAP
PHF23
DVL2
ZNF358
MCOLN1
MFSD1
SLC35A5
ATG3
WDR62
THAP8
RAD9A
PPP1CA
ATP6V1G1
TMEM116
ERP29
PNP
HAGH
FAHD1
HPS5
GTF2H1
CLCN7
PRR5L
COMMD9
GBA
HOOK2
TPP1
TAF10
UBE2B
CDKL3
AFF4
SPNS1
LAT
TBC1D30
GNS
SPPL3
THRAP3
ARMCX5-GPRASP2
BHLHB9
GPRASP2
TRAPPC2L
GALNS
RNASEK
C17orf49
THOP1
SGTA
CLN3
APOBR
CIRBP
FAM174C
EFNA2
SPATA25
NEURL2
CTSA
ZSWIM1
DHX35
COMMD8
ATP6V0C
AMDHD2
HOXC13
PLA2G1B
SGO1
SLC33A1
ATP6V1C1
TRMO
UBAP2L
C1orf43
LAMTOR1
ANAPC15
HNRNPH2
GLA
SERINC4
SERF2
HYPK
B4GALT2
DPH2
ATP6V0B
KDM4C
CEP162
MTRNR2L1
GTF2A1
VPS33A
KLHL12
SBNO2
RRAGB
STX4
BAX
DUX4
CREBRF
NPTN
DUS3L
PRR22
SPG21
SHPK
CTNS
ADNP2
RRAGC
RMND1
ARMT1
PLD3
C19orf47
FRG2C
LAMA3
SLC38A7
FNIP1
UBN1
GLYR1
RPL35A
IQCG
LMLN
LOC102724770
DGCR6
AVPI1
PRDX6
VPS11
ZNF292
NAPA
ALLC
ATAD3A
CNP
CTDP1
ATP5IF1
PPFIBP2
SUPV3L1
SPATC1L
PRPSAP2
WDR24
FBXL16
SUMF1
TOP3A
SMCR8
RDH5
ITGA7
BLOC1S1
TBRG4
BCL2L13
ATP6V1E1
C5orf51
NAGPA
TMEM248
RGS20
ATP6V1H
RPL5
SLC35B2
HSP90AB1
NFKBIE
HNRNPA2B1
CBX3
YJU2
OSGIN1
LSM12
G6PC3
ZNF507
WBP2
TIMM22
TOGARAM1
KLHL28
DNAJC13
TSSC4
NUF2
MORC2
UBAP2
DNPEP
RAP2A
METTL25
CCDC59
NOL8
CENPP
MYDGF
ATXN3
CALML5
CCDC174
POLR3B
PIK3R3
MARCHF8
ARFGEF2
ARID3A
PRMT3
NME1
COMMD4
NUP214
NDST2
DPP9
PHYKPL
ATP5MC2
POLG
EIF2S1
ATP6V1D
GNB2
WASHC5
NSMCE2
CACYBP
NR1D1
SNAPC1
FAM187A
EFTUD2
CCDC103
VCPIP1
C8orf44-SGK3
KHDRBS1
GNAT1
NDUFS7
STX6
ADCK1
ATP6V0E1
WDR74
STX5
TMEM258
FEN1
PSMC4
USPL1
HMGB1
ANKRD12
SCAMP3
FAM189B
SLC49A4
HSPBAP1
TESK2
MMACHC
NOXO1
TBL3
RPS2
RNF151
SF3A3
SRA1
SLC35A4
APBB3
CPEB4
FHL3
EMC2
UTP11
UROS
BCCIP
EEF1A1
NEU1
TOR1AIP2
TOR1AIP1
PBRM1
GNL3
PDE12
MYL12A
TMEM259
CNN2
ARRDC4
FEM1A
ATG4C
ELP5
CTDNEP1
FRMPD1
CYCS
SLC36A1
THNSL1
SOD2
WTAP
MRPL24
HDGF
RPS27
RAB13
S100A13
S100A1
CHTOP
RPEL1
MSL2
EAPP
ZSCAN22
PTBP1
NUDCD3
SCYL3
MRPL48
MRPL27
EME1
LRFN3
QTRT1
SCNN1D
UBE2J2
LEMD3
CACUL1
CDIP1
TNRC18
LOC100129484
KANSL2
SHC1
CKS1B
LAMTOR5
FLAD1
MIS18BP1
RPL27
IFI35
TOM1
MED11
ZMYND15
CXCL16
ZNF56
ANKHD1-EIF4EBP3
ANKHD1
RFESD
TIPARP
CCNL1
VPS26A
CCNT1
ABHD11
LRRC56
HRAS
CCNYL1
RBBP5
H4C14
H3C15
H3C14
H2AC19
H2AC18
SULT1A4
SULT1A3
SLX1B
SLX1A
BOLA2B
BOLA2
BOLA2-SMG1P6
CRNKL1
CFAP61
CEP350
LTBP2
CHMP7
NUFIP2
ARID3B
ZZZ3
TMEM39A
POGLUT1
SNRPE
CREBL2
SARS2
MRPS12
TSNAX
ZNF33B
LONP1
CATSPERD
SNRPA
C19orf54
MRPL3
FLT4
MRPS23
BORCS7
MRPL55
RGP1
MSMP
GBA2
SF3B5
PARL
ZBTB6
RC3H2
ZNF687
DUS2
DPEP2NB
DDX28
SECISBP2
CKS2
SLBP
TRAPPC8
TMEM129
TACC3
MTERF4
SOD3
CASC3
MTF2
STAT3
THAP5
DNAJB9
PAXBP1
ITGB3BP
EFCAB7
NAA38
LMOD1
CHD3
TIMM17A
PARP1
GABPB2
MLLT11
DUSP12
JMJD1C
SRSF3
THOC3
PEX14
DFFA
ATAD2
CORO7-PAM16
CORO7
TMCO2
ZMPSTE24
DNAJA3
MVK
RABL3
PIK3C2A
GTF2E1
SRP9
GTF2H2
CAND1
B3GALNT2
ACAD9
CFAP251
MBD1
CXXC1
TCP11L1
RBM6
MON1A
HMX2
BUB3
PDE4DIP
CSTF2T
N6AMT1
MTIF3
RPS26
FDXACB1
C11orf1
ALG9
DDX31
SIKE1
GTF3C4
RNF43
RNMT
FAM210A
C12orf66
SMG5
LSR
VHLL
GLMP
BCLAF1
ZNF672
FITM2
ART1
GTF2IRD2
HACD2
IFT43
C8orf37
TGFB3
GTF2IRD2B
SLC25A32
DCAF13
CSNK1G3
GID4
ATPAF2
CDK7
HPS1
SRSF1
PDAP1
BUD31
SAMD10
PRPF6
CPT1A
INTS7
DTL
TNPO2
CTSL
MIA3
GFM1
TM9SF4
HACL1
BTD
DHDDS
MLEC
GOLM2
BUB1B
TMEM167B
SELENOH
AURKAIP1
CCDC124
ZBTB40
PPRC1
DNAJC25-GNG10
DNAJC25
PHRF1
BMS1
LTA4H
GDAP1
SLC25A53
FAM199X
CACTIN
TDG
C12orf73
BCL9
GORAB
PDXK
ARHGEF7
ZFYVE26
RAD51B
RPS29
HDGFL2
EPRS1
SKAP2
EXO1
DCAF8
IFT57
U2SURP
CSTF1
AURKA
MTFR2
LDLRAD4
GABPA
ATP5PF
FZR1
DOHH
TARS2
CEP63
ANAPC13
RNF224
SLC34A3
ATG5
RNF208
CYSRT1
WDR13
TMBIM6
NSG2
NUP153
VPS50
HEPACAM2
HSPA5
ASH1L
C11orf65
UTP23
MRPS21
SEC11A
KIF15
KIAA1143
ZNF850
CLSTN1
RCHY1
BCAR3
GDF15
GSTA4
NAT10
RORC
C2CD4D
ZNF565
ZNF146
USP30
PIDD1
CD164
PNPLA2
RPLP2
FNTB
GPD1
COX14
ERRFI1
SGF29
DNM2
DENND11
EIF1AD
CST6
BANF1
EHMT1
ARRDC1
CORO1A
NCL
HNRNPC
RPL38
TTYH2
CZIB
PSMC5
FTSJ3
DRG1
ASNS
CCDC200
ZNF408
ARHGAP1
NUP107
BANP
ZNF77
SRCAP
LOC730183
STOML2
PIGO
RPL22L1
PPP4R3A
NPM1
KEAP1
ARMC5
PPP1R10
MRPS18B
ATAT1
TMEM170A
DOP1B
COPS7A
C5orf49
PLEC
GRN
H4C15
SLC34A1
SLC3A2
OXSR1
PFN3
SEC11C
TRUB2
COQ4
HDAC6
AHCYL1
ZFYVE19
DNAJC17
HDAC2
ITGB1
NOL7
L3HYPDH
JKAMP
IP6K1
POLR2J3
WWOX
DYRK1B
KCNIP2
PCNX4
ZSCAN32
ZNF174
ADAT1
ORC2
CFAP43
AKAP9
ERBB2
TFPT
PRPF31
WDR55
DND1
TTC14
SV2A
GPHN
BOLA1
SYS1
SF3A2
PLEKHJ1
CARM1
ZNF714
ZNF682
TBC1D32
AAAS
LUC7L2
FMC1-LUC7L2
FMC1
TAMM41
PRC1
DNMT1
RAB18
DAZAP2
DENND4A
STX16
LPCAT3
HSPA9
RPS11
RPL13A
CHD1
CUL5
WDR89
RIOK3
CEBPD
EXOSC3
IQCH
AAGAB
IPO13
MZF1
NTMT1
C9orf50
TM2D1
HOXB8
HOXB7
HOXB6
TRIP4
PCLAF
RPS14
RPL37
CARD6
PRRG2
THG1L
DCP1A
NOSIP
PRKCSH
CCDC151
WDR4
KTI12
GOLGB1
YY1AP1
DAP3
TOM1L2
DRC3
PRKCI
SASH1
SLC25A26
USP54
SLC25A41
KHSRP
UBE4A
TOMM20
MLKL
SMARCAL1
CIART
C1orf54
CCT2
RTTN
GINS3
PKLR
FDPS
TTBK2
SMIM15
OSBPL8
FAM167A
LZTR1
RRP15
PDCD11
ATP5MD
CACNA1S
ASCL5
UTP3
GTPBP4
SETD3
CCNK
SIRT4
FUS
TAF13
ADAM2
SLC23A3
RETREG2
CNPPD1
EIF4G2
C6orf47
BAG6
APOM
KMT5C
SCAF11
TAF12
TBC1D22A
CDC34
POC1B-GALNT4
POC1B
GALNT4
C10orf88
ARF4
PSMD9
HPD
MFSD4B
GZMM
PSME3
BECN1
USP28
CBWD5
GUK1
GJC2
ESCO1
PPT1
WDR5B
ZMYND10
TMEM115
RASSF1
NPRL2
CYB561D2
ZSCAN25
NUGGC
ELP3
IPO11
DIMT1
KIFC1
PDCD6
PCNX3
MAP3K11
ESD
RBM48
PEX1
PDGFB
TRAPPC9
ZAR1L
BRCA2
IFRD1
TPM3
SHOX2
RSRC1
TPCN1
PRCC
TOMM70
LNP1
PPP2R1A
TMEM80
DEAF1
JUP
C19orf48
STT3B
EIF1
PARP2
CCNB1IP1
SMIM10L1
PRH1-TAS2R14
PRH1
ZNF219
TMEM253
IGIP
C17orf97
AK2
TMF1
CDCA3
ANAPC10
ABCE1
SEC23B
GLRX5
CDK20
AADAT
SLC35B1
ZNF165
OR1F12
RAD51AP1
C12orf4
SSBP1
ZNF497
A1BG
UMAD1
DSTYK
MTNR1A
H2AZ2
RB1CC1
RPS13
RPS3
SLC38A5
SLC25A46
NEDD4L
FTSJ1
BLOC1S6
LGALS8
CWC25
RNPS1
MRPS31
TAF9
RAD17
AK6
SMIM20
SEPTIN2
HDLBP
RTP3
LTF
L2HGDH
DMAC2L
MRPL21
IGHMBP2
MRPS33
PRKCD
ACSS1
VMAC
NDUFA11
CFAP20
IFT172
GCKR
FNDC4
UBFD1
EARS2
NUDT15
RBMXL1
KYAT3
INTS9
HMBOX1
DDX21
ZBTB3
POLR2G
SLC12A6
NUTM1
NOP10
CLN6
PNPLA6
FAM43A
TCAIM
SLC39A10
KMT2E
TTC17
MCCC1
RRN3
FAM227B
DTWD1
SP2
AATF
SKA3
MRPL57
ZNF529
NFYC
POT1
ZNF622
ZSWIM3
ACOT8
HTR5A
SLC23A1
KCNJ9
ABT1
COPS4
SRSF11
CSDE1
PSMD6
TADA1
ACBD6
SLC30A5
TRAF6
RAG1
NAA25
IFIT1B
NCBP2AS2
NCBP2
PRORP
PPP2R3C
FAM53C
CDC25C
NFX1
FBXL19
MYO1G
COA6
PCCB
PMVK
WDR36
STK19
LOC110384692
DXO
C4B_2
C4B
C4A
ANKRD46
POLR1B
HMGCR
ARL4A
POLR3G
MBLAC2
ZMYND12
PPCS
CCDC30
OPA1
GNL2
QTRT2
CCDC191
PRPF38B
RALBP1
SACM1L
CTH
SLC25A13
PSMD3
ZBTB7B
LENEP
LNPEP
PLIN1
PEX11A
C16orf89
ALG1
WDR93
TRAPPC12
EIPR1
VCP
FANCG
RBM4
EIF4A1
CD68
ZBTB45
SLC27A5
GOSR2
CIPC
TMEM87A
GANC
ZFPM1
RAB5A
EFHB
OGA
ZNF513
SNX17
EIF2B4
SCGB1C2
SCGB1C1
ODF3
PDCD6IP
ZNF561
ICE2
SRSF7
DDX19A
RAB30
MPZL1
SRPRB
MBD4
IFT122
SMN2
SMN1
TNPO3
ATF7-NPFF