ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10045307 | LNCAP
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◢ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◢ SRX10045306: LNCAP

◣ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◢ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

GET4
HEXA
DUX4
UBE2Q1
CHRNB2
TSPAN31
MARCHF9
CDK4
SYNGAP1
PHF1
CUTA
AP5Z1
ILF3
HPS5
GTF2H1
MTRNR2L1
FRG2C
ALLC
LOC102724770
DGCR6
UVRAG
LAMP1
RNASEH2C
KAT5
AVPI1
PIP4P1
OSGEP
APEX1
RPL5
SPATC1L
WASHC2C
ATP6V0D1
AGRP
WASHC2A
MTHFR
CLCN6
PGK1
PRR5L
COMMD9
CTDP1
SPNS1
LAT
YJU2
TRMO
THRAP3
PNP
WDR62
THAP8
FLT4
KDM4C
NDUFS7
EIF2S1
ATP6V1D
TOR1AIP2
TOR1AIP1
UBE2B
CDKL3
RPUSD4
FAM118B
HOOK2
CHMP7
CCDC90B
CLN3
APOBR
GABARAP
PHF23
DVL2
HDAC2
TPR
ODR4
ART1
MED11
ZMYND15
CXCL16
SMG7
PLAA
IFT74
RNASEK
C17orf49
TMEM259
CNN2
CSDE1
TPP1
TAF10
MAMDC2
LTA4H
HAGH
FAHD1
C8orf37
UBAP2
FRG2
FNTB
CCDC200
FEM1A
FBXL19
CDCA3
PIK3R3
CACYBP
ZNF672
AFF4
DUS3L
PRR22
LARS1
WDR24
FBXL16
PPRC1
ARF4
FANCF
CEP162
OXNAD1
DPH3
GBA
PDE4DIP
GSTA4
PDXDC1
ATL1
MAP4K5
RPS29
MSL2
SULT1A4
SULT1A3
SLX1B
SLX1A
BOLA2B
BOLA2
CORO1A
RAD9A
PPP1CA
RPEL1
SHC1
CKS1B
FLAD1
QTRT2
CCDC191
VPS33A
MTF2
WDR74
STX5
NME1
NUF2
PRKCI
MLH1
EPM2AIP1
MTRNR2L2
MSH3
DHFR
PHRF1
MMADHC
THG1L
PHLPP1
KLHL12
PIDD1
SRA1
SLC35A4
APBB3
PNPLA2
RFXANK
BORCS8-MEF2B
BORCS8
RPLP2
TMEM116
ERP29
CHD1
RNF169
ATP5MC2
VEZT
FGD6
GABPA
ATP5PF
CDIP1
GTPBP8
GOLM2
TMED4
DDX56
GOSR2
HACD2
USPL1
HMGB1
SLC38A7
NSUN4
EFHC1
PRORP
PPP2R3C
EED
CEP70
USP35
KCTD21
ALG14
ZSCAN22
CUL5
RPS27
RAB13
TFPT
PRPF31
C6orf47
BAG6
APOM
B9D1
ISY1-RAB43
ISY1
SNRPE
TMCO2
ZMPSTE24
FRMPD1
LMOD1
TIMM17A
GLIPR1L2
TRIM3
TIMM10B
PHYKPL
SESN1
CEP57L1
DHX35
RPL27
IFI35
BOLA2-SMG1P6
SLC35A5
ATG3
PAXBP1
EIF2AK3
CBWD5
CBWD3
CCDC146
LAMTOR5
CLSTN1
CDK19
AMD1
PMVK
PPIP5K2
TSACC
CCT3
C5orf51
NCBP2AS2
NCBP2
PCYT1A
EEF1AKMT3
UBQLN1
METTL1
CYP27B1
SLC33A1
STOML2
PIGO
CPEB4
UBAP2L
C1orf43
TUFT1
CYCS
CCT2
ESCO1
TIMM13
GTF3C5
SCNN1D
UBE2J2
HSPA5
TIMM22
AATF
NUDT15
USE1
TMEM242
ACAD9
H4C14
H3C15
H3C14
H2AC19
H2AC18
H4C15
VCPIP1
C8orf44-SGK3
TTI2
UNKL
C16orf91
GFM2
CCNL1
SP2
TOGARAM1
KLHL28
DBT
IDE
RFX1
TM9SF4
FUS
UFSP2
C4orf47
INTS8
ZNF789
ATP5MF-PTCD1
ATP5MF
INTS7
DTL
TASP1
TNFRSF19
SLC35B1
ARL14EP
PRMT2
HOXC13
SIRT4
NCSTN
COPA
MFSD1
TTC32
RCHY1
MRPL54
APBA3
RAX2
ZNF140
DAD1
ABHD4
METTL25
CCDC59
USP21
PPOX
WDR36
PMF1-BGLAP
PMF1
ATP6V1G1
ARMCX5-GPRASP2
BHLHB9
GPRASP2
RPL35A
IQCG
LMLN
EIF3E
WARS2
PDIA5
BMS1
PEX12
AP2B1
SRPRB
BNIP3L
GBE1
TIPARP
SCAF11
C10orf88
SLC17A7
PIH1D1
ALDH16A1
DUSP12
SUPV3L1
PMEL
RAB5B
CDK2
VHL
PDCL3
PEF1
MPP3
CD300LG
MTBP
MRPL13
C12orf66
RINT1
PUS7
CLTC
EIF4G2
CLPB
KRTAP10-7
KRTAP10-6
TBRG4
PPP2R5A
THAP9
SEC31A
ARIH1
MAPKBP1
RPS26
RPL21
OXSR1
OSGIN1
DCAF8
GOLGB1
SPG11
MRPL45
TRAPPC9
STMP1
M6PR
KLRG1
SKA3
MRPL57
PRCC
ORC4
MBD5
STAM
SMIM4
NT5DC2
SPATA25
NEURL2
CTSA
ZSWIM1
NEMF
CBWD6
HSPH1
TMX2
MED19
ZCCHC7
LGALS8
SF3A3
SERINC4
SERF2
HYPK
EIF3F
KLHL32
PCBP4
NDUFAF4
SLC35E2B
ACY1
ABHD14B
ABHD14A-ACY1
ABHD14A
TESK1
RPL22L1
EEF1AKNMT
EXD1
CHP1
PSMC4
WDR89
FIS1
CLDN15
NFX1
NDUFA6
EIF3L
ANKRD54
COX16
DARS2
CENPL
PPP2R1A
ECH1
SMIM13
TVP23B
INO80C
UFD1
CDC45
ATG5
MOK
GTF2H2
SRP9
C17orf97
GTF2H4
VARS2
N4BP2L2
TMEM39A
POGLUT1
ORC2
TMEM52
OSCP1
SMN2
SMN1
CHEK1
SRFBP1
TMED10
LOC101928764
EID1
MYH7B
GSS
FBXL18
KAT7
TTC37
ARSK
PDE12
NUP214
SSBP1
DDX18
RFC2
CEP350
LUC7L2
FMC1-LUC7L2
FMC1
RRM1
MRPS7
MIF4GD
GGA3
HMGB2
SETD4
CBR1
RETSAT
ELMOD3
IKZF3
ARID3B
MYEOV
MTRNR2L8
ERBB2
MRPL11
PDXK
PNMT
MIEN1
GRB7
ALDH18A1
HNRNPA2B1
CBX3
SLC39A10
ELP5
CTDNEP1
WDTC1
SLC45A4
EPC2
DDX17
STRBP
NUDT3
BHLHE40
TES
TMEM199
SEBOX
POLDIP2
SLC25A25
NAIF1
SEPTIN7
KIF5C
TCAP
WASF2
ERAL1
ID1
MUC3A
SSH3
ERCC1
IRS2
SFSWAP
KCNK4
GPR137
BAD
POLR2J3
SERPIND1
PGAP3
GSK3B
TET3
NAGPA
DHRS3
CD300LF
RSF1
AAMDC
MSMO1
CRBN
RBBP8NL
GRHL2
UBE3B
KCTD10
DAGLA
RGPD2
RGPD1
RPGRIP1L
FTO
RBM48
PEX1
MTRNR2L9
ARL4D
PSMD3
ASB2
SUPT7L
SLC4A1AP
MDM2
LTBP2
PTPRF
SEPTIN9
RALGDS
BCL3
RPS6KC1
FAM72D
FAM72C
SUMF1
SKIL
WBP2
TXNRD1
IL1R1
NECTIN4
ZBTB7B
LENEP
RAE1
MTRNR2L3
ATF3
EFNA3
STAT6
SPIDR
LY6L
STARD3
PPP1R1B
HES1
TNS3
SCHIP1
C8orf33
TOMM22
CLCN7
SMARCD2
USP49
C1orf174
THAP7
ZZZ3
DDX42
CCDC47
SRSF1
TBL1X
RIOK2
MEOX1
ABCC10
TRIB1
TRIM48
POLR3F
DZANK1
RAPGEF3
SOCS2
RBBP5
RXRA
SERPINI1
PDCD10
ELF3
TOX2
ANGPTL4
CDKN1A
STX16
UBE2H
TSR3
GNPTG
GPRC5A
LZTR1
SPTAN1
VPS50
HEPACAM2
UAP1L1
MAN1B1
MACC1
POLR2J
UNC13D
TRIOBP
SQSTM1
CD55
POLR2J2
NOL4L
APOBEC3B
GADD45A
ATG16L2
ESRP2
FOXJ1
RHOBTB2
LIMA1
RARB
ZNF335
TRIM29
TMC7
FLOT2
DHRS13
IRF2BP2
TRMT2A
RANBP1
IDH3B
ATAD2
PSMB7
SUPT6H
SDF2
AVEN
OPN1MW3
OPN1MW2
OPN1MW
PGLYRP4
CARD16
FANCA
EN2
CLPTM1
APOC2
AURKAIP1
SKIDA1
CYP27C1
SMYD1
SPINK1
EAPP
ZNF358
MCOLN1
DMAC2
PPCDC
GET3
ANXA2
LYPD6B
MOCS3
DPM1
GSR
RDH5
ITGA7
BLOC1S1
PISD
SPIRE2
RIPOR3
ERICH4
REN
TRA2B
IRF2BPL
VIRMA
RGS3
CDKAL1
PDGFB
MRTO4
EMC1
CSF3
SALL4
ELFN2
NOXO1
WASHC5
NSMCE2
FCGR1A
PCIF1
SLC25A11
RNF167
PFN1
BCKDK
PURB
FXYD3
MYCL
ZNF408
ARHGAP1
TRAF4
UPP1
DAZAP1
XPO7
DOK2
SLC25A53
FAM199X
CYP2A13
PDAP1
BUD31
SRI
YAP1
TSFM
NOTCH2NLC
LAMA3
TOP3A
SMCR8
SENP1
PFKM
SLC25A45
FRMD8
GFM1
PDZK1IP1
ZBTB7C
TBL2
GLTP
ARID3A
RDX
CDK12
ZDHHC6
VTI1A
RMND5B
TMEM205
RAB3D
CCDC159
FAM72A
TEX28
ITGB5
CASC3
KMT2E
ATP6V0C
AMDHD2
SAP30BP
RECQL5
BRF1
TRMT1
NACC1
SLIRP
OSER1
ALKBH1
IER3
FLOT1
MMP13
UXS1
PPP6R1
DOK7
PTK2
U2SURP
ENTPD4
RARG
TMCO6
NDUFA2
IK
C8orf74
ZNF165
OR1F12
ASIC3
TXN2
ZNF585B
ZNF383
INMT
CORO7-PAM16
CORO7
WSB2
AXL
PRICKLE1
SPAG16
ZSCAN25
GPR182
CELA3B
TAS1R1
NOL9
PRKAG2
KAT8
SLC4A2
CDK5
MIER1
DNAI4
BIRC2
GATB
PLAGL1
KALRN
ZBTB45
WWOX
SLC27A5
FNTA
ANXA10
DOK3
DDX41
MB
FZR1
TJP2
TMEM40
EIF2D
TBC1D30
MYLK2
GNS
RHEBL1
OSBPL2
CCDC88B
KRT1
MED1
NOTCH2
PMS1
ORMDL1
TJAP1
SUPT4H1
KRR1
MINDY4
CCNT1
SSUH2
ZMYND8
KIF25
ST7
KLF9
JMJD7-PLA2G4B
JMJD7
ERAP1
RTF2
NDUFA4
PSMA1
VAC14
GP1BA
SUSD4
MRPS15
KLF6
EPHB3
SHLD2
GLUD1
TRIP4
PCLAF
HUS1
SLC16A5
HERC3
JUNB
DENND2B
KRT31
FAM83A
PHAX
ALDH7A1
KLF10
GRAMD2B
DNAJC11
RAD51AP1
C12orf4
RNF223
NAPB
SEPTIN5
INTS10
GP1BB
SPRED2
E2F6
MLLT10
PXN
DOHH
DERL3
DICER1
ZNF576
TRIM16L
IRGQ
PTPRR
TM2D2
ADAM9
BUB1B
PLEC
PSME3
BECN1
PTBP1
ZNF668
ZNF646
DIP2A
LRRC47
FGGY
RPS5
FSCN1
ARHGAP32
STAU2
RGS20
MEMO1
UBE3C
BCL2L13
CSRNP1
SLC35F6
NUP107
ARID5B
CCDC97
MOB1B
TMEM63A
RBPJ
OAZ1
COL23A1
STX1A
PTPN6
C12orf57
SPHK2
TNNC2
MEF2C
HMOX1
UBE2I
ANKS6
RRP15
PLA2G4B
SUMO3
RHCE
NGDN
KANSL3
FER1L5
ATG9B
ABCB8
SLCO4A1
ADGRB3
UBAP1
TNC
HNRNPH2
GLA
ITGB3BP
EFCAB7
TGFB2
BANP
SEMA3B
LSMEM2
GRAMD1C
KCNMA1
C19orf33
CALML5
THOP1
SGTA
PASD1
USP30
PPWD1
ETV4
CENPK
SEMA5B
TBC1D2
SULT2A1
THEMIS2
BIRC3
SSH1
CMIP
ADAMTS14
B4GALT2
ACVR1B
PDCD6IP
SH3GL1
LRFN4
CHAF1A
GPATCH3
LANCL2
ARID2
BAIAP2
VASH2
ATG14
EIF5A2
RPTOR
KYAT1
SCRN2
PMEPA1
NUGGC
ELP3
RETNLB
EPS8
MAGEB10
HM13
ZNF514
ZNF2
OR9A4
H2BW2
GAMT
TMEM262
NKD2
BSG
REEP4
MYL12A
HR
HNRNPF
NEK6
XRCC5
NOTCH2NLB
ADARB1
RNPEPL1
GPN2
DUSP28
ANKMY1
SEC13
PSMD1
CXCL17
SLK
LRRC29